BAC Information

Click to search

BAC

Clone NameB6Ng01-074D09
Chromosome15 (Build37)
Map Location 76,991,338 - 76,992,446
singlet/doubletsinglet
Overlap geneRbm9
Upstream genePlec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6
Downstream geneLOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074D09.bB6Ng01-074D09.g
ACCDH891126DH891127
length1,2491,121
definitionDH891126|Mus musculus domesticus DNA, BAC clone: B6Ng01-074D09, 5' end.DH891127|Mus musculus domesticus DNA, BAC clone: B6Ng01-074D09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccaatttctgagtatatctatcccaattatacattctggaac
tggggaaatcaccacaggatgtgtccggggacctactggacctactgtga
gtcggacatcagtcaaaactccattaatcacctgccctccataagcccct
actttaactggagggccacaatgtttcttgggatcccctgggatcagtgt
caactcagaaccagtatccagcagaccccgaaaagtctgattatttcctt
ttccccagtgtacagttacccttgtaaaaggccgtaggtccctctgggga
agaactggagaaagggtaacagcaaaacctttgagtgtcttatcaagatc
cttcctcagaggaacctggccaccccttcattcaaggggttccggatctg
caaactgtctcaagtctggaaattgattcactggccgagattgctgttta
ccacgatctaatgtagcctttctttcatttgtttgagaatttttctgctt
atacagatcaaacaaatatgcagtaggcttcctatgtatttcattcctgg
aaacaccatgattgattagccagtaccaaaggtccaagcgagtcatgcca
ttataaatttcacctctcctgtgctgaccattactgggtatgttattata
aacattcttttgtctacgctgtccattataataactaggatcaccttgtc
tccggcgattcaatgctgccacctggcccttgttacctcgggatccaact
aaacccagtgaatttaattcatctaattgagcagaagcatctccaatgct
aagatctggcacaaggaaaagggaaagaacaaaacccttcaaatgtgctg
gtgcccctctcaccaatttgcgtcttatagagctggtgaaaggcatatct
tctggaccttcccattgtggacattatgctttacacaatatatccactct
agcattgcaatttccctaagtcttaaaatcccttcatcacactaagccac
ggaatttcagcatctcagtcattttccagtaagccatcttttgataaaca
cctcagccaccattcaacaacttttgacacccttttttacttggcgagct
tcgtatataacctagaatctctaactcaaggacccatgtccataactcgc
tgcctaggttttatgttgtcaccttaatccacccttagtccatgcccacg
atctacaggttctgcttgatgatagccaactcataaggctctcttagga
gaattctgaattacagatgttccatgatccttaattattgtcctttctga
cgccattctagtacctaacacctaagttgcgggttgagcagaaatgcaca
gggttaccagagctggccaggatcttaaccctttgcgggtaaactccctt
ttgttcaggccttgaggccccagtcctggaaccctgtagagattgtctcc
ttagctgtgtcctgacatgttggtctctgtgttttatggacagtacataa
ccttccatgggttttgatttctcagccaaagtgcagtgcacaccacactt
gccatgctgaggtttgcagcatttatggactttgtttatctggggactgt
ttctctactgacatcaggggtctttcttacagccgaaggctggacgtgtc
aggaaactagactagaagccaatcttcttacaagtaaatactggtgtgtc
ttgataagtcccagctgtgaccagctagcagtaaccacaagcactaaatc
actctgtggaaaacttctcttcagactatgacacaattgaataaaatcgc
tggcagtgaaactttgattcattggtgatagtatgaattgatgtgctctc
ggtctttttattcactcggatttattattggtgagtttagtgtttaggat
tttaaaccatgctttcctgccttgctgtgtttagtgttttattccatcta
aaattaggcagctctgggacccaggggctgagatgttacagttaagggtg
ctttctccattctgccacaccaggagcaaattaatggactgaaagaacag
ttttacacagaaaggttagaaactattttatgaacttatttactacattt
tgatggaacagttttcattgtgttttgtaaatgagcaatagttgtttttc
tatgctcttacactatgattgctttttaagaagtttcttattgtgttgta
acacttgttttactcagaactcattgcgtaataacttagagttgtggtac
caaggcattgtacaatgaacggcgcttagggactagactgaataggtttt
tttttaatggagaagaatttgtatcctattttttaatttgatatttctag
gatggctaatggttggagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_76991338_76992446
seq2: B6Ng01-074D09.g_67_1187 (reverse)

seq1  TATCTC--AACATTAGCAATCCTAGAAATACTCAATTAAAAAATA-GATA  47
      ||||||  | ||||||| ||||||||||||   |||||||||||| ||||
seq2  TATCTCCAACCATTAGCCATCCTAGAAATATCAAATTAAAAAATAGGATA  50

seq1  CAAA-TCTTCT-CATTAAAAAAACA-CTATTCAGTCTTGTCCCTAAGCG-  93
      |||| |||||| ||||||||||| | ||||||||||| ||||||||||| 
seq2  CAAATTCTTCTCCATTAAAAAAAAACCTATTCAGTCTAGTCCCTAAGCGC  100

seq1  CGTTCATTGTACAATGCCTTGGTA-CACAACTCT-AGGTATTACGCAATG  141
      |||||||||||||||||||||||| ||||||||| || ||||||||||||
seq2  CGTTCATTGTACAATGCCTTGGTACCACAACTCTAAGTTATTACGCAATG  150

seq1  AGTTCTGAGTAAAACAAGTGTTACAACACAAT-AGAAACTTCTTAAAAAG  190
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTTCTGAGTAAAACAAGTGTTACAACACAATAAGAAACTTCTTAAAAAG  200

seq1  CATTCATAGTGTAAGAGCATAG-AAAACAACTATTGCTCATTTAC-AAAC  238
      || ||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  CAATCATAGTGTAAGAGCATAGAAAAACAACTATTGCTCATTTACAAAAC  250

seq1  ACAATGAAAACTGTTCCATCAAAATGTAGTAAATAAGTTCATAAAATAGT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAAACTGTTCCATCAAAATGTAGTAAATAAGTTCATAAAATAGT  300

seq1  TTCTAACCTTTCTGTGTAAAACTGTTCTTTCAGTCCATTAATTTGCTCCT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACCTTTCTGTGTAAAACTGTTCTTTCAGTCCATTAATTTGCTCCT  350

seq1  GGTGTGGCAGAATGGAGAAAGCACCCTTAACTGTAACATCTCAGCCCCTG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGCAGAATGGAGAAAGCACCCTTAACTGTAACATCTCAGCCCCTG  400

seq1  GGTCCCAGAGCTGCCTAATTTTAGATGGAATAAAACACTAAACACAGCAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAGAGCTGCCTAATTTTAGATGGAATAAAACACTAAACACAGCAA  450

seq1  GGCAGGAAAGCATGGTTTAAAATCCTAAACACTAAACTCACCAATAATAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAAAGCATGGTTTAAAATCCTAAACACTAAACTCACCAATAATAA  500

seq1  ATCCGAGTGAATAAAAAGACCGAGAGCACATCAATTCATACTATCACCAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGAGTGAATAAAAAGACCGAGAGCACATCAATTCATACTATCACCAA  550

seq1  TGAATCAAAGTTTCACTGCCAGCGATTTTATTCAATTGTGTCATAGTCTG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAAAGTTTCACTGCCAGCGATTTTATTCAATTGTGTCATAGTCTG  600

seq1  AAGAGAAGTTTTCCACAGAGTGATTTAGTGCTTGTGGTTACTGCTAGCTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGTTTTCCACAGAGTGATTTAGTGCTTGTGGTTACTGCTAGCTG  650

seq1  GTCACAGCTGGGACTTATCAAGACACACCAGTATTTACTTGTAAGAAGAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGCTGGGACTTATCAAGACACACCAGTATTTACTTGTAAGAAGAT  700

seq1  TGGCTTCTAGTCTAGTTTCCTGACACGTCCAGCCTTCGGCTGTAAGAAAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTAGTCTAGTTTCCTGACACGTCCAGCCTTCGGCTGTAAGAAAG  750

seq1  ACCCCTGATGTCAGTAGAGAAACAGTCCCCAGATAAACAAAGTCCATAAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGATGTCAGTAGAGAAACAGTCCCCAGATAAACAAAGTCCATAAA  800

seq1  TGCTGCAAACCTCAGCATGGCAAGTGTGGTGTGCACTGCACTTTGGCTGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAAACCTCAGCATGGCAAGTGTGGTGTGCACTGCACTTTGGCTGA  850

seq1  GAAATCAAAACCCATGGAAGGTTATGTACTGTCCATAAAACACAGAGACC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAAAACCCATGGAAGGTTATGTACTGTCCATAAAACACAGAGACC  900

seq1  AACATGTCAGGACACAGCTAAGGAGACAATCTCTACAGGGTTCCAGGACT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTCAGGACACAGCTAAGGAGACAATCTCTACAGGGTTCCAGGACT  950

seq1  GGGGCCTCAAGGCCTGAACAAAAGGGAGTTTACCCGCAAAGGGTTAAGAT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTCAAGGCCTGAACAAAAGGGAGTTTACCCGCAAAGGGTTAAGAT  1000

seq1  CCTGGCCAGCTCTGGTAACCCTGTGCATTTCTGCTCAACCCGCAACTTAG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCAGCTCTGGTAACCCTGTGCATTTCTGCTCAACCCGCAACTTAG  1050

seq1  GTGTTAGGTACTAGAATGGCGTCAGAAAGGACAATAATTAAGGATCATGG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGGTACTAGAATGGCGTCAGAAAGGACAATAATTAAGGATCATGG  1100

seq1  AACATCTGTAATTCAGAATTC  1109
      |||||||||||||||||||||
seq2  AACATCTGTAATTCAGAATTC  1121