BAC Information

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BAC

Clone NameB6Ng01-074J23
Chromosome15 (Build37)
Map Location 92,296,536 - 92,456,717
singlet/doubletdoublet
Overlap genePdzrn4
Upstream geneSlc2a13, Lrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074J23.bB6Ng01-074J23.g
ACCDH891414DH891415
length8791,129
definitionDH891414|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J23, 5' end.DH891415|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,296,536 - 92,297,542)(92,455,605 - 92,456,717)
sequence
gaattcttatcagtgcagtgtattgttgttccaaattttaaattttgacc
ttattttttgatatcatctttgttctgtgcattcttagattatagatgat
tgcagggaaggctccctaatctccttcgcatgtgtgatggttagatggtt
aggaatatttctgtttgtttcaaaagaagcaaaaaaaaaaaaaaaaaaca
aaacaaaacaaaaaaaaaaaaacaaaaaaaaaactgtgagacaggaaaca
gacatcaaacctacagagactgtccccagtccttcactgagtaaaatctc
agcatttaaaatttttcctttgttcttttgtgtaccactggataactgta
tcaatgctttggtgaggattttgtttatggggtacaaaggaacatgacta
tacagcaatttcacaatctttataaaagttcagaggatagtaagaacaca
ggaggatatcatcctgacaggaaagggaattcaaggtgtactgtttattg
ggacagctctataatctcactttacacaatcaagaaacttctaaaccata
atcggaataaaagagtcctgagtataaaggtatactctctgaatgatggc
tctcaggcagtttcttccactgcagtagagcaaaagaaggcagagccaga
gaacagaggccagagtttagctctcaggcatcagttttaccacagctcat
ttctaaaagccatttgctgttaacatccacatttgctcagtgtcattatt
ttctttaatgttctttaaatgttcagcaccagtctgtgatccagtttgtt
tgtttattttaaatcacctttctcttcctaattataaaaatacacagaat
gtttcccatgacttgtgtgggtgggtgtg
gaattctgtacccatgacattctcgaggatgcagatcctcccttcatgat
caagagtccttcttgtccgctgttccctgagctgagctgatgctcaggtc
agctccaggcaggtgaaaggacaagctgaaggagtcagttatgtctttca
ccatttagaccctaggggtttgaactcatgtaattgggtttggtagcaag
tgtccttaatctcccgagccatctcaactgcccccaagcacctggtgatg
ataagtctgacatcaagaagaaacaaaattaactttgatgctaaataggt
tacgttatctacaatgtctgtttagacttttgtctagattaccaaaggaa
tcatgattctcttctctttggttctgcacatcttttatgtacactgtact
ctcaaaagtgccctaggttcctgtttgatgatttatatccataataaata
agctgttgaatgtgggattgcaaaagaaaaaaaaaaagagcaaatgaccc
gtgcagctgccatcaagacaaagcattggaattctgggtagattgacaag
aaatagcacagacttagaagattctagggcaagtgagtttccagcagaga
acacaaaatggactgagttcaaaaccactttgccagtagggcgtttgaaa
aaaaaagaaggcatagtttaagaaacaggtaactttggttacaagactta
gagcaaatgcctaccgttcttgttttgtgatttcactgacaactctgagt
tattaaggattttgtaaccagggaatgacttgcttagatattccttagga
acatgtgttttccagtggggtttctgttcctgtcgctggcagagtaatct
cagaagtcacatattctatccctttgtcttggccccgaggaagctgacat
atgtctagaatctggcggaagacagaccttaaatacttctagacaattgc
cctagccaataccaatggcccctgatggagctaccgttagtcttttattt
tttctgtaggtggctttttcttggaatgtgggtcagcattatttgattca
taactgtattcatcaatttttgttgacatattatccttttaataagccca
ggaaagcatgcctttccttaaaattcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_92296536_92297542
seq2: B6Ng01-074J23.b_46_924

seq1  GAATTCTTATCAGTGCAGTGTATTGTTGTTCCAAATTTTAAATTTTGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCAGTGCAGTGTATTGTTGTTCCAAATTTTAAATTTTGACC  50

seq1  TTATTTTTTGATATCATCTTTGTTCTGTGCATTCTTAGATTATAGATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTGATATCATCTTTGTTCTGTGCATTCTTAGATTATAGATGAT  100

seq1  TGCAGGGAAGGCTCCCTAATCTCCTTCGCATGTGTGATGGTTAGATGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGAAGGCTCCCTAATCTCCTTCGCATGTGTGATGGTTAGATGGTT  150

seq1  AGGAATATTTCTGTTTGTTTCAAAAGAAGCAAAAAAAAAAAAAAAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATTTCTGTTTGTTTCAAAAGAAGCAAAAAAAAAAAAAAAAAACA  200

seq1  AAACAAAACAAAAAAAAAAAAACAAAAAAAAAACTGTGAGACAGGAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAAAAAAAAAAACAAAAAAAAAACTGTGAGACAGGAAACA  250

seq1  GACATCAAACCTACAGAGACTGTCCCCAGTCCTTCACTGAGTAAAATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAAACCTACAGAGACTGTCCCCAGTCCTTCACTGAGTAAAATCTC  300

seq1  AGCATTTAAAATTTTTCCTTTGTTCTTTTGTGTACCACTGGATAACTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTAAAATTTTTCCTTTGTTCTTTTGTGTACCACTGGATAACTGTA  350

seq1  TCAATGCTTTGGTGAGGATTTTGTTTATGGGGTACAAAGGAACATGACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTTTGGTGAGGATTTTGTTTATGGGGTACAAAGGAACATGACTA  400

seq1  TACAGCAATTTCACAATCTTTATAAAAGTTCAGAGGATAGTAAGAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAATTTCACAATCTTTATAAAAGTTCAGAGGATAGTAAGAACACA  450

seq1  GGAGGATATCATCCTGACAGGAAAGGGAATTCAAGGTGTACTGTTTATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATATCATCCTGACAGGAAAGGGAATTCAAGGTGTACTGTTTATTG  500

seq1  GGACAGCTCTATAATCTCACTTTACACAATCAAGAAACTTCTAAACCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTCTATAATCTCACTTTACACAATCAAGAAACTTCTAAACCATA  550

seq1  ATCGGAATAAAAGAGTCCTGAGTATAAAGGTATACTCTCTGAATGATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGAATAAAAGAGTCCTGAGTATAAAGGTATACTCTCTGAATGATGGC  600

seq1  TCTCAGGCAGTTTCTTCCACTGCAGTAGAGCAAAAGAAGGCAGAGCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCAGTTTCTTCCACTGCAGTAGAGCAAAAGAAGGCAGAGCCAGA  650

seq1  GAACAGAGGCCAGAGTTTAGCTCTCAGGCATCAG-TTTACCACAGCTCAT  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAACAGAGGCCAGAGTTTAGCTCTCAGGCATCAGTTTTACCACAGCTCAT  700

seq1  TTCTAAAAGCCATTTGCTGTTAACATCCACATTTGCTCAGTGTCATTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAGCCATTTGCTGTTAACATCCACATTTGCTCAGTGTCATTATT  750

seq1  TTCTTTAATGTTCTTTAAATGTTCAGCACCAGTCTGTGATCCAGTTTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAATGTTCTTTAAATGTTCAGCACCAGTCTGTGATCCAGTTTGTT  800

seq1  TGTTTA-TTTAAATCACCTTTCTCTTCCTAATTAT-AAAATACACAGAAT  847
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTTTATTTTAAATCACCTTTCTCTTCCTAATTATAAAAATACACAGAAT  850

seq1  GTTTCCCATGACTTGTGTGGTGGTGTGGTGTGTGTGTGTGTGTGTGTGTG  897
      |||||||||||||||||||  |||| ||||||                  
seq2  GTTTCCCATGACTTGTGTG--GGTG-GGTGTG------------------  879

seq1  TGTTTGTGTGCGCGTGCACATATATGTGCATGCCTGTGTGCATGTACATG  947
                                                        
seq2  --------------------------------------------------  879

seq1  TATGTGCATATGTGTGCATGTGTGCATGTACATGTATGTGCACACACATG  997
                                                        
seq2  --------------------------------------------------  879

seq1  TGTGGGTGTG  1007
                
seq2  ----------  879

seq1: chr15_92455605_92456717
seq2: B6Ng01-074J23.g_67_1195 (reverse)

seq1  TCTGAATTTTA--GGAAGGCATGCTT--CTTGGC----TATAAAGATAAT  42
      |||||||||||  | |||||||||||  || |||    || || ||||||
seq2  TCTGAATTTTAAGGAAAGGCATGCTTTCCTGGGCTTATTAAAAGGATAAT  50

seq1  ATGTC-ACAAAAA-TGATGAATACAGTTATGAATC-AATAATGCTGACCA  89
      ||||| ||||||| ||||||||||||||||||||| ||||||||||||| 
seq2  ATGTCAACAAAAATTGATGAATACAGTTATGAATCAAATAATGCTGACCC  100

seq1  ACATTCCA--GAAAAGCCACCCTACAGAAAAA--TAAAGACTAACGGTAG  135
      ||||||||   |||||||| ||||||||||||   |||||||||||||||
seq2  ACATTCCAAGAAAAAGCCA-CCTACAGAAAAAATAAAAGACTAACGGTAG  149

seq1  CT-CATCA-GGGCCATTGGTATTGGCTAGGGCAATTGTCTAGAAGTATTT  183
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCAGGGGCCATTGGTATTGGCTAGGGCAATTGTCTAGAAGTATTT  199

seq1  AAGGTCTGTCTTCCGCCAGATTCTAGACATATGTCAGCTTCCTCGGGGCC  233
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTGTCTTCCGCCAGATTCTAGACATATGTCAGCTTCCTCGGGGCC  249

seq1  AAGACAAAGGGATAGAATATGTGACTTCTGAGATTACTCTGCCAGCGACA  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAGGGATAGAATATGTGACTTCTGAGATTACTCTGCCAGCGACA  299

seq1  GGAACAGAAACCCCACTGGAAAACACATGTTCCTAAGGAATATCTAAGCA  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGAAACCCCACTGGAAAACACATGTTCCTAAGGAATATCTAAGCA  349

seq1  AGTCATTCCCTGGTTACAAAATCCTTAATAACTCAGAGTTGTCAGTGAAA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTCCCTGGTTACAAAATCCTTAATAACTCAGAGTTGTCAGTGAAA  399

seq1  TCACAAAACAAGAACGGTAGGCATTTGCTCTAAGTCTTGTAACCAAAGTT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAACAAGAACGGTAGGCATTTGCTCTAAGTCTTGTAACCAAAGTT  449

seq1  ACCTGTTTCTTAAACTATGCCTTCTTTTTTTTTCAAACGCCCTACTGGCA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTCTTAAACTATGCCTTCTTTTTTTTTCAAACGCCCTACTGGCA  499

seq1  AAGTGGTTTTGAACTCAGTCCATTTTGTGTTCTCTGCTGGAAACTCACTT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTTTTGAACTCAGTCCATTTTGTGTTCTCTGCTGGAAACTCACTT  549

seq1  GCCCTAGAATCTTCTAAGTCTGTGCTATTTCTTGTCAATCTACCCAGAAT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGAATCTTCTAAGTCTGTGCTATTTCTTGTCAATCTACCCAGAAT  599

seq1  TCCAATGCTTTGTCTTGATGGCAGCTGCACGGGTCATTTGCTCTTTTTTT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCTTTGTCTTGATGGCAGCTGCACGGGTCATTTGCTCTTTTTTT  649

seq1  TTTTCTTTTGCAATCCCACATTCAACAGCTTATTTATTATGGATATAAAT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTGCAATCCCACATTCAACAGCTTATTTATTATGGATATAAAT  699

seq1  CATCAAACAGGAACCTAGGGCACTTTTGAGAGTACAGTGTACATAAAAGA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAACAGGAACCTAGGGCACTTTTGAGAGTACAGTGTACATAAAAGA  749

seq1  TGTGCAGAACCAAAGAGAAGAGAATCATGATTCCTTTGGTAATCTAGACA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGAACCAAAGAGAAGAGAATCATGATTCCTTTGGTAATCTAGACA  799

seq1  AAAGTCTAAACAGACATTGTAGATAACGTAACCTATTTAGCATCAAAGTT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTAAACAGACATTGTAGATAACGTAACCTATTTAGCATCAAAGTT  849

seq1  AATTTTGTTTCTTCTTGATGTCAGACTTATCATCACCAGGTGCTTGGGGG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTTCTTCTTGATGTCAGACTTATCATCACCAGGTGCTTGGGGG  899

seq1  CAGTTGAGATGGCTCGGGAGATTAAGGACACTTGCTACCAAACCCAATTA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAGATGGCTCGGGAGATTAAGGACACTTGCTACCAAACCCAATTA  949

seq1  CATGAGTTCAAACCCCTAGGGTCTAAATGGTGAAAGACATAACTGACTCC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTCAAACCCCTAGGGTCTAAATGGTGAAAGACATAACTGACTCC  999

seq1  TTCAGCTTGTCCTTTCACCTGCCTGGAGCTGACCTGAGCATCAGCTCAGC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTGTCCTTTCACCTGCCTGGAGCTGACCTGAGCATCAGCTCAGC  1049

seq1  TCAGGGAACAGCGGACAAGAAGGACTCTTGATCATGAAGGGAGGATCTGC  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAACAGCGGACAAGAAGGACTCTTGATCATGAAGGGAGGATCTGC  1099

seq1  ATCCTCGAGAATGTCATGGGTACAGAATTC  1113
      ||||||||||||||||||||||||||||||
seq2  ATCCTCGAGAATGTCATGGGTACAGAATTC  1129