BAC Information

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BAC

Clone NameB6Ng01-074L01
Chromosome15 (Build37)
Map Location 10,879,125 - 11,037,797
singlet/doubletdoublet
Overlap geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12
Upstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14
Downstream geneTars, LOC100039772, Npr3, LOC381002, Sub1, LOC100040027
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074L01.bB6Ng01-074L01.g
ACCDH891463DH891464
length1,1011,120
definitionDH891463|Mus musculus domesticus DNA, BAC clone: B6Ng01-074L01, 5' end.DH891464|Mus musculus domesticus DNA, BAC clone: B6Ng01-074L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,879,125 - 10,880,226)(11,036,656 - 11,037,797)
sequence
gaattcacttcatagaccctgctggcctcaaacccacagggatctgcttg
cctctggctgcggatgctgggattaaagacatgtaccatagtacccagca
tagccagtcatgcagggcctgaatctgggtacagaatcttctggggagtc
cgcaggcttttaagattgattttcaatggacacatagtgattgtacatac
ttaggaaatagagtaaaacataatatatgcatacaacaaatacatatctg
gacaataggcatatctaccatcttaaacatttattatttttttatgttag
aaacatgaaaatattttctattagctattctgaatagatcattaaatgct
gctgactgtagctggccttgttgttcctggttttttttggtttttttttg
ttttttgtttttgttttttttttcttcttcttcaacttatcacacagggc
atctttatttacttgaagattgcctcagtgaagtgccacagagaaagaat
cctcttgtcacattctgaaagcgggaagtcggaaatcaagatgtcagtga
atttgttccggctgagggacctgcggggatgggtgatcatcttgtgcctc
tgctcaaattcaggcagcttgctggcaatcttggatgtctcttggcttgt
aaaagcatcgccctgatcctcatcttcatcttctccaaggattttattga
tggcatctatggaaagattatttcaaaataaattcatactcacatgtgta
gggggcttttacactacctttgtctgtgggatgcacacaatcaactcaga
cactctgggactcttgctgattaggaagagttcctggcggctggggaact
ggtagtctatgcttacctccctgtgctgcttatgaaggcagagagtacag
actagaagactggtagggtctgttcccgatgaccactctcccactgtgtg
acccttctgatttttctgtaaacagaaaagagaggtttgctgagagaagt
cagtgagctaaactatagtagtgtttggccagcatgtgctacccgcaatc
atgctatgactgtttattccttctcaggtttgtggagggaatcatcaatg
a
gaattcccagaaggatcatcacgttgagtctaacttcttggtagtcaagc
ttctaacagcttggtagtaaacttcttttcttcagctcatggagtaaatc
catttccaaagggtctactttgtaaaagctgagagatgggcagatggaac
acttgcttgaccattctagatggtagagtggggggaaaacgttaacatct
caggcagtatctatcttcctcacagctaggtgtctgcatcattgactgtg
agctaagtacaacaccagtacagcttgatgcagaaaaaaaaaatgggtgc
cctgacattcagaaaaacatctctgggctaatagcactgggaaaatgcag
ataaacagataacccttaaagccagtgatgaagaacatcaaccccatcct
gcaaaaaaactaatgcacctgctattcttggcaggctgtggggaatgaat
gaggtggccggacagagtcaagacacccacaagaacatgctgtttttctg
tcgtgtttggaacactggcttcagctagataagcctaaattgcttcctct
gtagctcaagaattgcctgttgctcattatacccatgccggtgtcaggct
tgtcgtgatgcatgcgatgttctagttactcacagaccaagtcaagatgt
aaaagggttatgatgtctctgcgaggaaggagtttttacaggagcacaat
gaatcaaaatgtttgattctccttcctataacttgtggacactgagagag
aaaattattttttccataaggtagtatagtaggcaagcttcttataagtt
tcccaatttttttaccctgatttaggggcatctgctctcttattcatggg
aactctattctgggtgataatgtgaaggaattgtacatatctgaagttcc
aaagcagatagcctaaaagtgtgtgcttatcagggagtcatgacctatta
atgtgtatccttttttttttccaatttttataggtattttctcattacat
tccaatcctatccgaagtcccctataaccccccctgctccctatcaccca
actccactctggtccatgtgatcctgtactgggcatataagttggcagac
agccttttcctccctgatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_10879125_10880226
seq2: B6Ng01-074L01.b_43_1143

seq1  GAATTCACTTCATAGACCCTGCTGGCCTCAAACCCACAGGGATCTGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCATAGACCCTGCTGGCCTCAAACCCACAGGGATCTGCTTG  50

seq1  CCTCTGGCTGCGGATGCTGGGATTAAAGACATGTACCATAGTACCCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCTGCGGATGCTGGGATTAAAGACATGTACCATAGTACCCAGCA  100

seq1  TAGCCAGTCATGCAGGGCCTGAATCTGGGTACAGAATCTTCTGGGGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTCATGCAGGGCCTGAATCTGGGTACAGAATCTTCTGGGGAGTC  150

seq1  CGCAGGCTTTTAAGATTGATTTTCAATGGACACATAGTGATTGTACATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGCTTTTAAGATTGATTTTCAATGGACACATAGTGATTGTACATAC  200

seq1  TTAGGAAATAGAGTAAAACATAATATATGCATACAACAAATACATATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAATAGAGTAAAACATAATATATGCATACAACAAATACATATCTG  250

seq1  GACAATAGGCATATCTACCATCTTAAACATTTATTATTTTTTTATGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAGGCATATCTACCATCTTAAACATTTATTATTTTTTTATGTTAG  300

seq1  AAACATGAAAATATTTTCTATTAGCTATTCTGAATAGATCATTAAATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAAAATATTTTCTATTAGCTATTCTGAATAGATCATTAAATGCT  350

seq1  GCTGACTGTAGCTGGCCTTGTTGTTCCTGGTTTTTTTTGGTTTTTTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGTAGCTGGCCTTGTTGTTCCTGGTTTTTTTTGGTTTTTTTTTG  400

seq1  TTTTTTGTTTTTGTTTTTTTTTTCTTCTTCTTCAACTTATCACACAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTGTTTTTTTTTTCTTCTTCTTCAACTTATCACACAGGGC  450

seq1  ATCTTTATTTACTTGAAGATTGCCTCAGTGAAGTGCCACAGAGAAAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATTTACTTGAAGATTGCCTCAGTGAAGTGCCACAGAGAAAGAAT  500

seq1  CCTCTTGTCACATTCTGAAAGCGGGAAGTCGGAAATCAAGATGTCAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTCACATTCTGAAAGCGGGAAGTCGGAAATCAAGATGTCAGTGA  550

seq1  ATTTGTTCCGGCTGAGGGACCTGCGGGGATGGGTGATCATCTTGTGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCCGGCTGAGGGACCTGCGGGGATGGGTGATCATCTTGTGCCTC  600

seq1  TGCTCAAATTCAGGCAGCTTGCTGGCAATCTTGGATGTCTCTTGGCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAATTCAGGCAGCTTGCTGGCAATCTTGGATGTCTCTTGGCTTGT  650

seq1  AAAAGCATCGCCCTGATCCTCATCTTCATCTTCTCCAAGGATTTTATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATCGCCCTGATCCTCATCTTCATCTTCTCCAAGGATTTTATTGA  700

seq1  TGGCATCTATGGAAAGATTATTTCAAAATAAATTCATACTCACATGTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTATGGAAAGATTATTTCAAAATAAATTCATACTCACATGTGTA  750

seq1  GGGGGCTTTTACACTACCTTTGTCTGTGGGATGCACACAATCAACTCAGG  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGGGCTTTTACACTACCTTTGTCTGTGGGATGCACACAATCAACTCA-G  799

seq1  ACACTCTGGGACTCTTGCTGATTAGGAAGAGTTCCTGGCGGCTGGGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTGGGACTCTTGCTGATTAGGAAGAGTTCCTGGCGGCTGGGGAAC  849

seq1  TGGTAGTCTATGCTTACCTCCCTGTGCTGCTTAGGAAGGCAGAGAGTACA  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGTAGTCTATGCTTACCTCCCTGTGCTGCTTATGAAGGCAGAGAGTACA  899

seq1  GACTAGAAGACTGGTAGGGTCTGTTCCCGATGACCACTCTCCCACTGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAAGACTGGTAGGGTCTGTTCCCGATGACCACTCTCCCACTGTGT  949

seq1  GACCCTTCTGATTTTTCTGTAAAACAGAAAAGAGAGGTTTGCTGAGAGAA  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GACCCTTCTGATTTTTCTGT-AAACAGAAAAGAGAGGTTTGCTGAGAGAA  998

seq1  GTCAGTGAGCTAAACTATAGTAGTGTTTGGCCAGCATGTGCTACCCGCAA  1050
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTCAGTGAGCTAAACTATAGTAGTGTTTGGCCAGCATGTGCTACCCGC-A  1047

seq1  ATCATGCTATGACTGTTTATTCC-TCTCAGG-TTGTGGAGGGTATCATCA  1098
      ||||||||||||||||||||||| ||||||| |||||||||| |||||||
seq2  ATCATGCTATGACTGTTTATTCCTTCTCAGGTTTGTGGAGGGAATCATCA  1097

seq1  ATGA  1102
      ||||
seq2  ATGA  1101

seq1: chr15_11036656_11037797
seq2: B6Ng01-074L01.g_66_1185 (reverse)

seq1  CCATCAGTGGGAGGAAAAGCCCCTGGTCTTGCAAACTTTATATGCCCCAG  50
      ||||||  ||||||||||| |    ||| ||| ||| ||||||| |||||
seq2  CCATCA--GGGAGGAAAAGGC---TGTC-TGCCAAC-TTATATG-CCCAG  42

seq1  TACAGGGGAACACCAGGGCCAAGAAGTGGGAGTGGGTGAATAGGGGAGCA  100
      ||||  ||| |||  || |||   |||||   |||||| ||| |||||||
seq2  TACA--GGATCACATGGACCA--GAGTGGAGTTGGGTG-ATA-GGGAGCA  86

seq1  GGGGGGGTGTATAGGGGACTTTCGGGATAGGATTTGAAATGTAAATGAAG  150
      |||||||| ||||||||||||   |||||||| ||| ||||| |||| ||
seq2  GGGGGGGT-TATAGGGGACTT--CGGATAGGA-TTGGAATGT-AATG-AG  130

seq1  AAAATACCTAATAAAAATTGGAAAAAAAAAAGGATACACATTAATAGGTC  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCT-ATAAAAATTGGAAAAAAAAAAGGATACACATTAATAGGTC  179

seq1  ATGACCTCCCTGATAAGCACACACTTTTAGGCTATCTGCTTTGGAACTTC  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGA-CTCCCTGATAAGCACACACTTTTAGGCTATCTGCTTTGGAACTTC  228

seq1  AGATATGTACAATTCCTTCACATTATCACCCAGAATAGAGTTCCCATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGTACAATTCCTTCACATTATCACCCAGAATAGAGTTCCCATGAA  278

seq1  TAAGAGAGCAGATGCCCCTAAATCAGGGTAAAAAATTTGGGAAACTTATA  350
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAAGAGAGCAGATGCCCCTAAATCAGGGTAAAAAAATTGGGAAACTTATA  328

seq1  AGAAGCTTGCCTACTATACTACCTTATGGAAAAAATAATTTTCTCTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTGCCTACTATACTACCTTATGGAAAAAATAATTTTCTCTCTCA  378

seq1  GTGTCCACAAGTTATAGGAAGGAGAATCAAACATTTTGATTCATTGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCACAAGTTATAGGAAGGAGAATCAAACATTTTGATTCATTGTGCT  428

seq1  CCTGTAAAAACTCCTTCCTCGCAGAGACATCATAACCCTTTTACATCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAAAACTCCTTCCTCGCAGAGACATCATAACCCTTTTACATCTTG  478

seq1  ACTTGGTCTGTGAGTAACTAGAACATCGCATGCATCACGACAAGCCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTCTGTGAGTAACTAGAACATCGCATGCATCACGACAAGCCTGAC  528

seq1  ACCGGCATGGGTATAATGAGCAACAGGCAATTCTTGAGCTACAGAGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGCATGGGTATAATGAGCAACAGGCAATTCTTGAGCTACAGAGGAAG  578

seq1  CAATTTAGGCTTATCTAGCTGAAGCCAGTGTTCCAAACACGACAGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAGGCTTATCTAGCTGAAGCCAGTGTTCCAAACACGACAGAAAAA  628

seq1  CAGCATGTTCTTGTGGGTGTCTTGACTCTGTCCGGCCACCTCATTCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGTTCTTGTGGGTGTCTTGACTCTGTCCGGCCACCTCATTCATTC  678

seq1  CCCACAGCCTGCCAAGAATAGCAGGTGCATTAGTTTTTTTGCAGGATGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCCTGCCAAGAATAGCAGGTGCATTAGTTTTTTTGCAGGATGGG  728

seq1  GTTGATGTTCTTCATCACTGGCTTTAAGGGTTATCTGTTTATCTGCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTTCTTCATCACTGGCTTTAAGGGTTATCTGTTTATCTGCATTT  778

seq1  TCCCAGTGCTATTAGCCCAGAGATGTTTTTCTGAATGTCAGGGCACCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGCTATTAGCCCAGAGATGTTTTTCTGAATGTCAGGGCACCCAT  828

seq1  TTTTTTTTTCTGCATCAAGCTGTACTGGTGTTGTACTTAGCTCACAGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTGCATCAAGCTGTACTGGTGTTGTACTTAGCTCACAGTCA  878

seq1  ATGATGCAGACACCTAGCTGTGAGGAAGATAGATACTGCCTGAGATGTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCAGACACCTAGCTGTGAGGAAGATAGATACTGCCTGAGATGTTA  928

seq1  ACGTTTTCCCCCCACTCTACCATCTAGAATGGTCAAGCAAGTGTTCCATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTCCCCCCACTCTACCATCTAGAATGGTCAAGCAAGTGTTCCATC  978

seq1  TGCCCATCTCTCAGCTTTTACAAAGTAGACCCTTTGGAAATGGATTTACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATCTCTCAGCTTTTACAAAGTAGACCCTTTGGAAATGGATTTACT  1028

seq1  CCATGAGCTGAAGAAAAGAAGTTTACTACCAAGCTGTTAGAAGCTTGACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGCTGAAGAAAAGAAGTTTACTACCAAGCTGTTAGAAGCTTGACT  1078

seq1  ACCAAGAAGTTAGACTCAACGTGATGATCCTTCTGGGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAAGTTAGACTCAACGTGATGATCCTTCTGGGAATTC  1120