BAC Information

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BAC

Clone NameB6Ng01-074M09
Chromosome15 (Build37)
Map Location 32,552,220 - 32,553,413
singlet/doubletsinglet
Overlap geneSema5a
Upstream geneLOC667231, Tas2r119, 0610007N19Rik
Downstream geneLOC100040962, Sdc2, Pgcp, 1700084J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074M09.bB6Ng01-074M09.g
ACCDH891526DH891527
length1,1781,149
definitionDH891526|Mus musculus domesticus DNA, BAC clone: B6Ng01-074M09, 5' end.DH891527|Mus musculus domesticus DNA, BAC clone: B6Ng01-074M09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctgccttctgtggacacacacatgtaacattcccttacatgg
ggacacacacacacacacacaagaacataagtataaagaaaaatggcaag
acataagaaatatataaagatgtgctggggactcctgtatgcaactaaag
tgtgtacacactaggccagctgagaattagcaccggaatagatcaacatg
aaaatattattcttcgtaacagacttggatcctttgtagccagccctttg
aaattccctatttcctcagtgtcaggggaggtaaagtagggtgcacctga
ctctcgagagcctcttgtaggagaaggctataacagaaccagaagggcag
ctgagtgcacttcacaggctcctgaaccaccttgtttgcgctcatcattg
gataggacttgggaggtgacacatcgaatcctcccatggttgtcatgcac
cgctgatctgtgttgcatgtttcagtctgactttgtatgtattagtataa
agcacatgcttcaagaagaaaatcacataggagaaacctggagagaactt
tggacagtttaaagtgctttctttcattccgtctttcccagtactgagat
aggactcagaccttacctattcgagccaagtatctgctcagggtacctga
ggcctgcaagttcttccagaatgtcacataactaacaaacctccacgaga
tttgaaaaggttgcctctcctacctgcagcttcctccctgctggacagaa
atgaaactaccttctttccttgtaaattagtcaccgtcgccacattctta
tcttgtttgtgttccaaccagtggctgctcaatggcgttccttcctcttc
cactggcttatgaaaacgacttctgtgcgttttatttgctgtcacgcatg
ctgagtaaccccttcgctccttttctgttgccattgttattaacccattt
tctttgcgtgtatatttaggaggagaattctaaagcatctcttttgctta
aaaccctcatgtcaagccggaccacagaaaggagcagagactggccagtg
tggtggactcatatgaaacaagtgggatggttgccagggaaactagaata
cctaggacattgctcgattcaaaaggtgatgttacattacattctacttc
aatgcatgctcagcaggaggacttaaaa
gaattctcacctgaggaatacggaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacttcactccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactcaggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatgcctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcacccttatttataatggccagaagctggaaagaacccagat
ttccctaaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcaggcattaaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaag
gaactcgcacaatatatactcactgataagtgaatattagcccagaaact
taggatacccaagatataagatacaatttgctaaacccatgaaattcaag
aagaacgaagaccaaagtgtggacactttgccccttcttagaaatgggaa
caaaacacccatggaaggagttacagagacaaaatttggagctgtgacga
aaggatggaccatctagtgattgccatatgcagggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatatagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctattggatgtatcacagggccccaa
tggaggagctaaagaaattacccaagagctaaagggaactacaccctata
ggtggaacaacaatatgactaccagtacctggagcttcttgtctctagct
gcatatgttcaaagaatgctagtcggccatcactgcaagagaggccattg
acacgccaacttattatgcccagtacaggtaacccaggtcaaaagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32552220_32553413
seq2: B6Ng01-074M09.b_44_1221

seq1  GAATTCTTCTGCCTTCTGTGGACACACACATGTAACATTCCCTTACATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGCCTTCTGTGGACACACACATGTAACATTCCCTTACATGG  50

seq1  GGACACACACACACACACACAAGAACATAAGTATAAAGAAAAATGGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACACACACACACACAAGAACATAAGTATAAAGAAAAATGGCAAG  100

seq1  ACATAAGAAATATATAAAGATGTGCTGGGGACTCCTGTATGCAACTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGAAATATATAAAGATGTGCTGGGGACTCCTGTATGCAACTAAAG  150

seq1  TGTGTACACACTAGGCCAGCTGAGAATTAGCACCGGAATAGATCAACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACACACTAGGCCAGCTGAGAATTAGCACCGGAATAGATCAACATG  200

seq1  AAAATATTATTCTTCGTAACAGACTTGGATCCTTTGTAGCCAGCCCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTATTCTTCGTAACAGACTTGGATCCTTTGTAGCCAGCCCTTTG  250

seq1  AAATTCCCTATTTCCTCAGTGTCAGGGGAGGTAAAGTAGGGTGCACCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCCTATTTCCTCAGTGTCAGGGGAGGTAAAGTAGGGTGCACCTGA  300

seq1  CTCTCGAGAGCCTCTTGTAGGAGAAGGCTATAACAGAACCAGAAGGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGAGAGCCTCTTGTAGGAGAAGGCTATAACAGAACCAGAAGGGCAG  350

seq1  CTGAGTGCACTTCACAGGCTCCTGAACCACCTTGTTTGCGCTCATCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGCACTTCACAGGCTCCTGAACCACCTTGTTTGCGCTCATCATTG  400

seq1  GATAGGACTTGGGAGGTGACACATCGAATCCTCCCATGGTTGTCATGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGACTTGGGAGGTGACACATCGAATCCTCCCATGGTTGTCATGCAC  450

seq1  CGCTGATCTGTGTTGCATGTTTCAGTCTGACTTTGTATGTATTAGTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGATCTGTGTTGCATGTTTCAGTCTGACTTTGTATGTATTAGTATAA  500

seq1  AGCACATGCTTCAAGAAGAAAATCACATAGGAGAAACCTGGAGAGAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGCTTCAAGAAGAAAATCACATAGGAGAAACCTGGAGAGAACTT  550

seq1  TGGACAGTTTAAAGTGCTTTCTTTCATTCCGTCTTTCCCAGTACTGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGTTTAAAGTGCTTTCTTTCATTCCGTCTTTCCCAGTACTGAGAT  600

seq1  AGGACTCAGACCTTACCTATTCGAGCCAAGTATCTGCTCAGGGTACCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCAGACCTTACCTATTCGAGCCAAGTATCTGCTCAGGGTACCTGA  650

seq1  GGCCTGCAAGTTCTTCCAGAATGTCACATAACTAACAAACCTCCACGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCAAGTTCTTCCAGAATGTCACATAACTAACAAACCTCCACGAGA  700

seq1  TTTGAAAAGGTTGCCTCTCCTACCTGCAGCTTCCTCCCTGCTGGACAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAGGTTGCCTCTCCTACCTGCAGCTTCCTCCCTGCTGGACAGAA  750

seq1  ATGAAACTACCTTCTTTCCTTGTAAATTAGTCACCGTCGCCACATTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTACCTTCTTTCCTTGTAAATTAGTCACCGTCGCCACATTCTTA  800

seq1  TCTTGTTTGTGTTCCAACCAGTGGCTGCTCAATGGCGTTCCTTCCTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTGTGTTCCAACCAGTGGCTGCTCAATGGCGTTCCTTCCTCTTC  850

seq1  CACTGGCTTATGAAAACGACTTCTGTGCGTTTTATTTGCTGTCACGCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCTTATGAAAACGACTTCTGTGCGTTTTATTTGCTGTCACGCATG  900

seq1  CTGAGTAACCCCTTCGCTCCTTTTCTGTTGCCATTGTTATTAACCCA-TT  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGAGTAACCCCTTCGCTCCTTTTCTGTTGCCATTGTTATTAACCCATTT  950

seq1  TCTTTGCGTGTATATTTAGGAAGAGAATTCTAAAAGCATCTC-TCTGCCT  998
      ||||||||||||||||||||| ||||||||| |||||||||| | ||| |
seq2  TCTTTGCGTGTATATTTAGGAGGAGAATTCT-AAAGCATCTCTTTTGCTT  999

seq1  AAAACCCTCATGTCAAGCCAGACCCACAGAAA-GAGCAGAGACTGGCAAG  1047
      ||||||||||||||||||| || ||||||||| |||||||||||||| ||
seq2  AAAACCCTCATGTCAAGCCGGA-CCACAGAAAGGAGCAGAGACTGGCCAG  1048

seq1  TGTGGTGGATCTCAATAGGAAACAAGTGGGATGGTTGCCAGGGACAACTA  1097
      ||||||||| ||| ||| |||||||||||||||||||||||||| |||||
seq2  TGTGGTGGA-CTC-ATATGAAACAAGTGGGATGGTTGCCAGGGA-AACTA  1095

seq1  GAAATACCTAGGGACATGGCTCAGATGTCATAAAAGGTGAATGTTACATT  1147
      | |||||||| |||||| |||| ||| ||  |||||||| ||||||||||
seq2  G-AATACCTA-GGACATTGCTC-GAT-TC--AAAAGGTG-ATGTTACATT  1138

seq1  ACATTCTACCTTCATATGCCAGTGCTCAAGCCAGGAGGGACTTAAAA  1194
      |||||||| ||||| ||||   ||||||   ||||| ||||||||||
seq2  ACATTCTA-CTTCA-ATGC--ATGCTCA--GCAGGA-GGACTTAAAA  1178