BAC Information

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BAC

Clone NameB6Ng01-075F06
Chromosome15 (Build37)
Map Location 101,882,434 - 102,011,333
singlet/doubletdoublet
Overlap geneLOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad
Upstream geneEG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18
Downstream geneZfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075F06.bB6Ng01-075F06.g
ACCDH891917DH891918
length1,03964
definitionDH891917|Mus musculus domesticus DNA, BAC clone: B6Ng01-075F06, 5' end.DH891918|Mus musculus domesticus DNA, BAC clone: B6Ng01-075F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,010,287 - 102,011,333)(101,882,434 - 101,882,497)
sequence
gaattcatccgtgaacctatctgtgcttggacttttctctgtagtagttt
aattttatttttaattactaatccgatgttagtatggacttttgtagtac
gggggcttttcagtagtgtttgaccttcagtaagacattacatgttgggg
ttggggatttagctcagcgatagagccctgggtttggtcctcagctctga
gggaaaaaaaagaaaagaaaaagggcggggggagatattacatgctcatg
ttcgtaggtgtgtgtgttcatgtgcatgtgtgttcctgagtctgcgtgtt
tgtgtacgtatgtcatggtgtgcatgtggaaccctaatatcaacctctgg
tgttgcactcaggagtcatccaccttgtttttgaggtgttcattcaccgg
cctggagctcaccagctggatgaggctggctgtccagcaagccccagggc
ctgcctatctctggctccctggagctgggtttacaggcacgtgccaccac
catacctcaccttattttttttttttacatagattctggggatggaactt
aggtccaccacatacctgcaaactagtcacttcgctggtcgatctgtcgt
tccagcccaacattaaaagtttttgaaagagcataagccatggagatagg
taaacctaggttccgctgagatgtagcgtccgctgcctgcagacttcaga
ggaggctgactcagcgttgggaaaggcgtgcagagagctcagggcctagc
aacagcctctgaccagttctaacatgactccacagcttctttttcctcta
ccttttggccacagggctctgtgccatttctggtcagtgccacctctggt
accaccgtgctaggggcctttgacccctgaatgcaattgccgatgtttgc
cagcgacacggacttgtgttccatgtggatgtgagtgagacttgggtcac
ggggtagggtgggctacgctgaggccagactcacgctgttctctgctcac
aggctgctggggtgggagcgtcttgctgttctcgacaca
caatagactcaatgagaccaggagcctggagttgctgagctgcggcagcg
gggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102010287_102011333
seq2: B6Ng01-075F06.b_43_1081 (reverse)

seq1  TGTGTCCGAG-ACAGCAGGACGCTCCCACCCCAGGCAGCCTGTGGAGCAG  49
      ||||| |||| |||||| ||||||||||||||| ||||||||| ||||||
seq2  TGTGT-CGAGAACAGCAAGACGCTCCCACCCCA-GCAGCCTGT-GAGCAG  47

seq1  GAGGAACAGCGTGGGTCTTGGCCTCAGCGTAGCCCACCCTACCCCCGTGA  99
         |||||||||| ||| ||||||||||||||||||||||| ||||||||
seq2  --AGAACAGCGTGAGTC-TGGCCTCAGCGTAGCCCACCCTA-CCCCGTGA  93

seq1  CCCAAGTCTCACTCACATCCACATGGAACCACAGTCCGTGTCGCTGGCAA  149
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  CCCAAGTCTCACTCACATCCACATGGAACACAAGTCCGTGTCGCTGGCAA  143

seq1  ACATCGGCAATTGCATCCAGGGGGTCAAAGGCCCCTAGCACGGTGGTACC  199
      |||||||||||||||| || ||||||||||||||||||||||||||||||
seq2  ACATCGGCAATTGCATTCA-GGGGTCAAAGGCCCCTAGCACGGTGGTACC  192

seq1  AGAGGTGGCACTGACCAGAAATGGCACAGAGCCCTGTGGCCAAAAGGTAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGCACTGACCAGAAATGGCACAGAGCCCTGTGGCCAAAAGGTAG  242

seq1  AGGAAAAAGAAGCTGTGGAGTCATTGTTAGAACTGGTCAGAGGCTGTTGC  299
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGAAAAAGAAGCTGTGGAGTCA-TGTTAGAACTGGTCAGAGGCTGTTGC  291

seq1  TAGGCCCTGAGCTCTCTGCACGCCTTTCCCAACGCTGAGTCAGCCTCCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCTGAGCTCTCTGCACGCCTTTCCCAACGCTGAGTCAGCCTCCTC  341

seq1  TGAAGTCTGCAGGCAGCGGACGCTACATCTCAGCGGAACCTAGGTTTACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTGCAGGCAGCGGACGCTACATCTCAGCGGAACCTAGGTTTACC  391

seq1  TATCTCCATGGCTTATGCTCTTTCAAAAACTTTTAATGTTGGGCTGGAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCATGGCTTATGCTCTTTCAAAAACTTTTAATGTTGGGCTGGAAC  441

seq1  GACAGATCGACCAGCGAAGTGACTAGTTTGCAGGTATGTGGTGGACCTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATCGACCAGCGAAGTGACTAGTTTGCAGGTATGTGGTGGACCTAA  491

seq1  GTTCCATCCCCAGAATCTATGTAAAAAAAAAAAATAAGGTGAGGTATGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCCCCAGAATCTATGTAAAAAAAAAAAATAAGGTGAGGTATGGT  541

seq1  GGTGGCACGTGCCTGTAAACCCAGCTCCAGGGAGCCAGAGATAGGCAGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACGTGCCTGTAAACCCAGCTCCAGGGAGCCAGAGATAGGCAGGC  591

seq1  CCTGGGGCTTGCTGGACAGCCAGCCTCATCCAGCTGGTGAGCTCCAGGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCTTGCTGGACAGCCAGCCTCATCCAGCTGGTGAGCTCCAGGCC  641

seq1  GGTGAATGAACACCTCAAAAACAAGGTGGATGACTCCTGAGTGCAACACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATGAACACCTCAAAAACAAGGTGGATGACTCCTGAGTGCAACACC  691

seq1  AGAGGTTGATATTAGGGTTCCACATGCACACCATGACATACGTACACAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTGATATTAGGGTTCCACATGCACACCATGACATACGTACACAAA  741

seq1  CACGCAGACTCAGGAACACACATGCACATGAACACACACACCTACGAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAGACTCAGGAACACACATGCACATGAACACACACACCTACGAACA  791

seq1  TGAGCATGTAATATCTCCCCCCGCCCTTTTTCTTTTCTTTTTTTTCCCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGTAATATCTCCCCCCGCCCTTTTTCTTTTCTTTTTTTTCCCTC  841

seq1  AGAGCTGAGGACCAAACCCAGGGCTCTATCGCTGAGCTAAATCCCCAACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGAGGACCAAACCCAGGGCTCTATCGCTGAGCTAAATCCCCAACC  891

seq1  CCAACATGTAATGTCTTACTGAAGGTCAAACACTACTGAAAAGCCCCCGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATGTAATGTCTTACTGAAGGTCAAACACTACTGAAAAGCCCCCGT  941

seq1  ACTACAAAAGTCCATACTAACATCGGATTAGTAATTAAAAATAAAATTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAAAGTCCATACTAACATCGGATTAGTAATTAAAAATAAAATTAA  991

seq1  ACTACTACAGAGAAAAGTCCAAGCACAGATAGGTTCACGGATGAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTACAGAGAAAAGTCCAAGCACAGATAGGTTCACGGATGAATTC  1039

seq1: chr15_101882434_101882497
seq2: B6Ng01-075F06.g_76_139

seq1  CAATAGACTCAATGAGACCAGGAGCCTGGAGTTGCTGAGCTGCGGCAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGACTCAATGAGACCAGGAGCCTGGAGTTGCTGAGCTGCGGCAGCG  50

seq1  GGGGGGGGGGGGGG  64
      ||||||||||||||
seq2  GGGGGGGGGGGGGG  64