BAC Information

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BAC

Clone NameB6Ng01-076C04
Chromosome15 (Build37)Y (Build37)
Map Location 102,169,540 - 102,170,698573,820 - 574,171
singlet/doubletsingletsinglet
Overlap geneAaas
Upstream geneKrt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1
Downstream geneSp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076C04.bB6Ng01-076C04.g
ACCDH892492DH892493
length1,155682
definitionDH892492|Mus musculus domesticus DNA, BAC clone: B6Ng01-076C04, 5' end.DH892493|Mus musculus domesticus DNA, BAC clone: B6Ng01-076C04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(102,169,540 - 102,170,698)(573,820 - 574,171)
sequence
gaattccaggacagccagggctacacagtgaccttttctcaaagaaagac
agcccattcattctctctgctccttacctttcatgagcacagccagacgt
tcaccacttgggtcccacaccatggagtgggcctctcccccgagtctgta
acaggacaagcattgagtgtggctcattcccacttcatccctcctcccac
agctactcagactcacctctcctctccatctggggtctgaattgttgtct
cagaaagatctgctacgatggttgctgactttgcacctccaacatgtcct
ttccctgttcctgtaagcagtgttcttggcttatgtgcttcccttcagcc
ctcagtgccctataactgctatcttcctctgaccaccccagagagtctgc
attctgaaatgtcctaactcaccacatcgttctgggaatgacaaggaata
aattaatgcttcccccaatacagtgaacagcagtcggtttccatctggac
tccagcagccagtctggggacaggaaggaaaagataggagatggatctac
aggagggctaaagcaggggagaagatgaggagccataggtccaggcccag
gggaattcccttcccttcctcccagcttctgtgaatccatacagtcctca
cttacctggcagcgccctgaaagagttggccacgcctcacaagtccacat
ctgggcctcccagactctaaaccaaagaaagccagattacagcagggcct
tcaggctccacccctggactggccgggaagtgaagtgcccttctctgggt
tcttccctcactcccctagcttttcgcctactcacctaaagacggcagaa
ggagtagtagccaggactttgctgccatctggggaccacagcagattggt
aacccctcctcctcggaaccaaggaaaggggacacaagtctctgttgaaa
cgtcccatacctgagatagagggaactcagtacagaaactcaaaagattt
tcaagcaactcatggtgggctacccatttttgtacaccaaatccccagaa
gaaggagcagcagaaaccagactactcgacataaagacttatgtttaaga
tcacagtgatagctggcagagctcagctgaacttgaagacaaacaaacac
cacac
gaattcagaggcagtttacagggagaggtttcccctcccctacagagaca
ggttgaagagagttataataagctagacacagttaaagacagaacaagtg
ggctggagagatggctcagtggttaggtcctgagttcaaatcccagcaac
cacatggtggctcacaaccatctgtaatgagatctgatgccctcttctgg
ggtgtctgaagacagctacagtgtacttacatataataaataaatattaa
aaaaaaaagaacaagctagagaataaggagtcaaaaggccgggcgtggtg
gcgcacacctttaatcccagcactcgggaggcagaggcaggcagatttct
gagttcgaggccagcctggtctacaaagtgagctccaggacagccagggc
tatacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaagag
tcaaaagattagaacagattgctagttagtttgaggtaaagcaaggaaat
taagtgagatgcaaaaagaagcccatttgaatcagtcagcttggagggga
gttctgagtcagaatagctgaattgagccagcaaaaaacagcttactcag
cagtaaatctcagaggctgaaggtttccaggcctagtttaaaggacaatt
atctggtgaataaaaagttacatttacagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102169540_102170698
seq2: B6Ng01-076C04.b_46_1200

seq1  GAATTCCAGGACAGCCAGGGCTACACAGTGACCTTTTCTCAAAGAAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGTGACCTTTTCTCAAAGAAAGAC  50

seq1  AGCCCATTCATTCTCTCTGCTCCTTACCTTTCATGAGCACAGCCAGACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATTCATTCTCTCTGCTCCTTACCTTTCATGAGCACAGCCAGACGT  100

seq1  TCACCACTTGGGTCCCACACCATGGAGTGGGCCTCTCCCCCGAGTCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACTTGGGTCCCACACCATGGAGTGGGCCTCTCCCCCGAGTCTGTA  150

seq1  ACAGGACAAGCATTGAGTGTGGCTCATTCCCACTTCATCCCTCCTCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACAAGCATTGAGTGTGGCTCATTCCCACTTCATCCCTCCTCCCAC  200

seq1  AGCTACTCAGACTCACCTCTCCTCTCCATCTGGGGTCTGAATTGTTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTCAGACTCACCTCTCCTCTCCATCTGGGGTCTGAATTGTTGTCT  250

seq1  CAGAAAGATCTGCTACGATGGTTGCTGACTTTGCACCTCCAACATGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGATCTGCTACGATGGTTGCTGACTTTGCACCTCCAACATGTCCT  300

seq1  TTCCCTGTTCCTGTAAGCAGTGTTCTTGGCTTATGTGCTTCCCTTCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTTCCTGTAAGCAGTGTTCTTGGCTTATGTGCTTCCCTTCAGCC  350

seq1  CTCAGTGCCCTATAACTGCTATCTTCCTCTGACCACCCCAGAGAGTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCCCTATAACTGCTATCTTCCTCTGACCACCCCAGAGAGTCTGC  400

seq1  ATTCTGAAATGTCCTAACTCACCACATCGTTCTGGGAATGACAAGGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAATGTCCTAACTCACCACATCGTTCTGGGAATGACAAGGAATA  450

seq1  AATTAATGCTTCCCCCAATACAGTGAACAGCAGTCGGTTTCCATCTGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGCTTCCCCCAATACAGTGAACAGCAGTCGGTTTCCATCTGGAC  500

seq1  TCCAGCAGCCAGTCTGGGGACAGGAAGGAAAAGATAGGAGATGGATCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGCCAGTCTGGGGACAGGAAGGAAAAGATAGGAGATGGATCTAC  550

seq1  AGGAGGGCTAAAGCAGGGGAGAAGATGAGGAGCCATAGGTCCAGGCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCTAAAGCAGGGGAGAAGATGAGGAGCCATAGGTCCAGGCCCAG  600

seq1  GGGAATTCCCTTCCCTTCCTCCCAGCTTCTGTGAATCCATACAGTCCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTCCCTTCCCTTCCTCCCAGCTTCTGTGAATCCATACAGTCCTCA  650

seq1  CTTACCTGGCAGCGCCCTGAAAGAGTTGGCCACGCCTCACAAGTCCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTGGCAGCGCCCTGAAAGAGTTGGCCACGCCTCACAAGTCCACAT  700

seq1  CTGGGCCTCCCAGACTCTAAACCAAAGAAAGCCAGATTACAGCAGGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTCCCAGACTCTAAACCAAAGAAAGCCAGATTACAGCAGGGCCT  750

seq1  TCAGGCTCCACCCCTGGACTGGCCGGGAAGTGAAGTGCCCTTCTCTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTCCACCCCTGGACTGGCCGGGAAGTGAAGTGCCCTTCTCTGGGT  800

seq1  TCTTCCCTCACTCCCCTAGCTTTTCGCCTACTCACCTAAAGACGGCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTCACTCCCCTAGCTTTTCGCCTACTCACCTAAAGACGGCAGAA  850

seq1  GGAGTAGTAGCCAGGACTTTGCTGCCATCTGGGGACCACAGCAGATTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGTAGCCAGGACTTTGCTGCCATCTGGGGACCACAGCAGATTGGT  900

seq1  AACCCCTCCTCCTCGGAACCAAGGAAGGGGGACACAAGTCTCTGTTGAAA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACCCCTCCTCCTCGGAACCAAGGAAAGGGGACACAAGTCTCTGTTGAAA  950

seq1  CGTCCCATACCTGAGATAGAGGGAACTCAGTACAGAAACTCAAAAGATTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CGTCCCATACCTGAGATAGAGGGAACTCAGTACAGAAACTCAAAAGATTT  1000

seq1  TCAAGCAACTCATGGTGGGCTACCCATTTATGTACA-CAAATCCCCAG-A  1048
      ||||||||||||||||||||||||||||| |||||| ||||||||||| |
seq2  TCAAGCAACTCATGGTGGGCTACCCATTTTTGTACACCAAATCCCCAGAA  1050

seq1  GAAGGGGAAGCAGCAAGAAACCAGACTACTCGACATAAAGACCTATGTTT  1098
      |||||   |||||| ||||||||||||||||||||||||||| |||||||
seq2  GAAGG---AGCAGC-AGAAACCAGACTACTCGACATAAAGACTTATGTTT  1096

seq1  AAGATCACAGTGATAGCTGGCAGAGCTCAGCTGAAACTCTGAAGACAAAC  1148
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  AAGATCACAGTGATAGCTGGCAGAGCTCAGCTG-AACT-TGAAGACAAAC  1144

seq1  AACAACCACAC  1159
      ||  |||||||
seq2  AAACACCACAC  1155

seq1: chrY_573820_574171
seq2: B6Ng01-076C04.g_168_516 (reverse)

seq1  TTTTTTTTTTTTTTTTTTGGTGTTTTCGAGATAGGGTTTCTCTGTATAGC  50
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTGGT-TTTTCGAGACAGGGTTTCTCTGTATAGC  49

seq1  CCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCACGAACTCAG  100
      ||||||||||||||| |||||| ||||||||||||||||| |||||||||
seq2  CCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAG  99

seq1  AAATCTGCCTGCCTCTGCCTCCCAAGCGCTGGGATTAAAGGCGTGCGCCG  150
      ||||||||||||||||||||||| || |||||||||||||| ||||||| 
seq2  AAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCA  149

seq1  CCGCCACCTGGC----AACTC--TA-TCAC-----------TTTTTAAAA  182
      || |  || | |     ||||  || || |           |||||    
seq2  CCACGCCCGGCCTTTTGACTCCTTATTCTCTAGCTTGTTCTTTTTTTTTT  199

seq1  AAGATTTATTCATTTCGTGTA-------CGTGACTGTCTTTAAACACGCC  225
      || ||||||| |||   ||||        ||  ||||||| | |||  ||
seq2  AATATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACA--CC  247

seq1  CTAGAAAGAGAGCATCAGATCCCTATTATAGATGTTTGTGAGCCACCATG  275
      | || ||||| |||||||||| | |||| ||||| |||||||||||||||
seq2  CCAG-AAGAGGGCATCAGATCTC-ATTACAGATGGTTGTGAGCCACCATG  295

seq1  TGGTTGCTGGGAATTAAACTGAGGACCTCTGGAAGTGCCATCAGAGGTCT  325
      |||||||||||| || |||| ||||||                       
seq2  TGGTTGCTGGGATTTGAACTCAGGACC-----------------------  322

seq1  TAACCACTGAGCTATCTCTCCAGCCCA  352
      |||||||||||| ||||||||||||||
seq2  TAACCACTGAGCCATCTCTCCAGCCCA  349