BAC Information

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BAC

Clone NameB6Ng01-076K22
Chromosome15 (Build37)
Map Location 82,719,995 - 82,874,259
singlet/doubletdoublet
Overlap geneTcf20, Nfam1
Upstream geneAco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26
Downstream geneSerhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076K22.bB6Ng01-076K22.g
ACCDH892874DH892875
length9631,080
definitionDH892874|Mus musculus domesticus DNA, BAC clone: B6Ng01-076K22, 5' end.DH892875|Mus musculus domesticus DNA, BAC clone: B6Ng01-076K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,873,300 - 82,874,259)(82,719,995 - 82,721,067)
sequence
gaattccctaaggtgggatacagttctggattctctgtctttctctgcct
gcctctgtctctctctccctcctttcttaaccccctcgccctcccccgct
tgtgtacacacacacacacacacacgcgcgcgcgcgcgcgcgcggtctca
tgtaacccaggctagcctcaactttgctacttagtggaggttgaccctga
cccatctgggattacaggctggaatcacaggtgtgtcgcacgatgcccca
cttttcctttaacgtgtcttttcatggtatgctttttggactctgaccca
gcaccctctccgacttctgcctcgccccgctgggctctctcctgacctca
caggctccagcgtgtcctggctcttctaactcagctcatattcccctttc
ccccaagggtttcccgggaagctcacggggcgaaaacggttgaaaaactg
ctcagtaaacccgggatttaccagcaaatgagaaggcttatgactaaaga
ctccatacagaatactcaggcaggactccatcagtcttccctcctgtcag
caaagaggagggggcacaggggacacatactgcacagacatcaccttttc
ccacagatctggtcccccccccttcctggctcaccccagttacaggaaca
tctgatctctgcccagggctcccgaccctctgcagatgttgtgttgaccc
tgtcctcatgatgactctggtaggaccaggggccaagggggcctcagggg
tatgagtgataaaggactgtcagagagcccggcagccacccaaagtcagg
cttgtggctgccccgacgcagggccagggtatagtatgtataattctgag
agattcagaacatccctcagtcgccacaatctttagaaaatggatgaaaa
gctgatcaaacaggcttttgatgccaggatgaagaggggggtggggttga
gttggagggaaaa
gaattcaatacaacatgcactttttcattgtctgctgacacatgtgcaag
tagcataaactgttggctttggtgctagtccaagagtttgtaggaatcat
cctgctcttaagaatataatctcctggggctggagagacgactcagaatt
aagagcactggctgctcttccaaaaagtcctgagttcaagtcccagcaac
cacatggtggctcaaaaccatctttaatgggaactgatgatcctctggca
tgcaggcatacatgcagacagagcattcatattcataaataaatctttaa
aaaaaaaaaaacatagtttccaaactgccctcagtgggataattattcaa
cacaaatgagagtacacctgttccaaaatcctccagaaattcccagcttt
ctccacagagcacagagttcttcagcttcttcatctaaactaccaatact
ccttctgggcctctctgcagttgtttttcagaggaacagttggccatgtt
ttttgtggtgatttgaatatgcttggctgaaggagtggcactaatgggag
atatggccttgttggattaagtgaggccttgttggagaaattgtgtcaac
tgtgcgggtgggcaaggagatcctcctcctaaccacaagggagccagcct
tcagatgaagacatagaactctcagctccacctgcaccacgcctgcctgg
atgctgccatgttctcaccttgataataatggactgactctctgaaccct
gtaagccagccccaattaaatgttctttttataagagttgccttggtcat
gatgtctgttcacagcattaagaccctaagaaactcttcaatatacccta
gaaccaagattttcatcatcttgttcctatcaagccgttatttcttcctc
tgaagtttccctactcttaattttagttagtcacagaaacacctgtacat
tttcttccattaaattaaaattcaacattaataccctatgtggaaaagac
ataaagtcaaaaagcttattaacacagtatcttggccaacagacaaaact
ttggaagaaaaataaacatgttgtggtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_82873300_82874259
seq2: B6Ng01-076K22.b_47_1008 (reverse)

seq1  TTTCCCTCCAACTCAACCC--ACCCCCTCTTCATCCTGGCATCAAAAGCC  48
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  TTTCCCTCCAACTCAACCCCACCCCCCTCTTCATCCTGGCATCAAAAGCC  50

seq1  TGTTTGATCAGCTTTTCATCCATTTTCTAAAGATTGTGGCGACTGAGGGA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATCAGCTTTTCATCCATTTTCTAAAGATTGTGGCGACTGAGGGA  100

seq1  TGTTCTGAATCTCTCAGAATTATACATACTATACCCTGGCCCTGCGTCGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGAATCTCTCAGAATTATACATACTATACCCTGGCCCTGCGTCGG  150

seq1  GGCAGCCACAAGCCTGACTTTGGGTGGCTGCCGGGCTCTCTGACAGTCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCACAAGCCTGACTTTGGGTGGCTGCCGGGCTCTCTGACAGTCCT  200

seq1  TTATCACTCATACCCCTGAGGCCCCCTTGGCCCCTGGTCCTACCAGAGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACTCATACCCCTGAGGCCCCCTTGGCCCCTGGTCCTACCAGAGTC  250

seq1  ATCATGAGGACAGGGTCAACACAACATCTGCAGAGGGTCGGGAGCCCTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAGGACAGGGTCAACACAACATCTGCAGAGGGTCGGGAGCCCTGG  300

seq1  GCAGAGATCAGATGTTCCTGTAACTGGGGTGAGCCAGGAAGGGGGGGGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATCAGATGTTCCTGTAACTGGGGTGAGCCAGGAAGGGGGGGGGA  350

seq1  CCAGATCTGTGGGAAAAGGTGATGTCTGTGCAGTATGTGTCCCCTGTGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTGTGGGAAAAGGTGATGTCTGTGCAGTATGTGTCCCCTGTGCC  400

seq1  CCCTCCTCTTTGCTGACAGGAGGGAAGACTGATGGAGTCCTGCCTGAGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCTTTGCTGACAGGAGGGAAGACTGATGGAGTCCTGCCTGAGTA  450

seq1  TTCTGTATGGAGTCTTTAGTCATAAGCCTTCTCATTTGCTGGTAAATCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATGGAGTCTTTAGTCATAAGCCTTCTCATTTGCTGGTAAATCCC  500

seq1  GGGTTTACTGAGCAGTTTTTCAACCGTTTTCGCCCCGTGAGCTTCCCGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTACTGAGCAGTTTTTCAACCGTTTTCGCCCCGTGAGCTTCCCGGG  550

seq1  AAACCCTTGGGGGAAAGGGGAATATGAGCTGAGTTAGAAGAGCCAGGACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTTGGGGGAAAGGGGAATATGAGCTGAGTTAGAAGAGCCAGGACA  600

seq1  CGCTGGAGCCTGTGAGGTCAGGAGAGAGCCCAGCGGGGCGAGGCAGAAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGAGCCTGTGAGGTCAGGAGAGAGCCCAGCGGGGCGAGGCAGAAGT  650

seq1  CGGAGAGGGTGCTGGGTCAGAGTCCAAAAAGCATACCATGAAAAGACACG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGAGGGTGCTGGGTCAGAGTCCAAAAAGCATACCATGAAAAGACACG  700

seq1  TTAAAGGAAAAGTGGGGCATCGTGCGACACACCTGTGATTCCAGCCTGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGAAAAGTGGGGCATCGTGCGACACACCTGTGATTCCAGCCTGTA  750

seq1  ATCCCAGATGGGTCAGGGTCAACCTCCACTAAGTAGCAAAGTTGAGGCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGATGGGTCAGGGTCAACCTCCACTAAGTAGCAAAGTTGAGGCTA  800

seq1  GCCTGGGTTACATGAGACCGCGCGCGCGCGCGCGCGCGTGTGTGTGTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTTACATGAGACCGCGCGCGCGCGCGCGCGCGTGTGTGTGTGTG  850

seq1  TGTGTGTACACAAGCGGGGGAGGGCGAGGGGGTTAAGAAAGGAGGGAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTACACAAGCGGGGGAGGGCGAGGGGGTTAAGAAAGGAGGGAGAG  900

seq1  AGAGACAGAGGCAGGCAGAGAAAGACAGAGAATCCAGAACTGTATCCCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGGCAGGCAGAGAAAGACAGAGAATCCAGAACTGTATCCCAC  950

seq1  CTTAGGGAATTC  960
      ||||||||||||
seq2  CTTAGGGAATTC  962

seq1: chr15_82719995_82721067
seq2: B6Ng01-076K22.g_70_1149

seq1  GAATTCAATACAACATGCACTTTTTCATTGTCTGCTGACACATGTGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACAACATGCACTTTTTCATTGTCTGCTGACACATGTGCAAG  50

seq1  TAGCATAAACTGTTGGCTTTGGTGCTAGTCCAAGAGTTTGTAGGAATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAAACTGTTGGCTTTGGTGCTAGTCCAAGAGTTTGTAGGAATCAT  100

seq1  CCTGCTCTTAAGAATATAATCTCCTGGGGCTGGAGAGACGACTCAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTTAAGAATATAATCTCCTGGGGCTGGAGAGACGACTCAGAATT  150

seq1  AAGAGCACTGGCTGCTCTTCCAAAAAGTCCTGAGTTCAAGTCCCAGCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACTGGCTGCTCTTCCAAAAAGTCCTGAGTTCAAGTCCCAGCAAC  200

seq1  CACATGGTGGCTCAAAACCATCTTTAATGGGAACTGATGATCCTCTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGGCTCAAAACCATCTTTAATGGGAACTGATGATCCTCTGGCA  250

seq1  TGCAGGCATACATGCAGACAGAGCATTCATATTCATAAATAAATCTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCATACATGCAGACAGAGCATTCATATTCATAAATAAATCTTTAA  300

seq1  AAAAAAAAAAACATAGTTTCCAAACTGCCCTCAGTGGGATAATTATTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACATAGTTTCCAAACTGCCCTCAGTGGGATAATTATTCAA  350

seq1  CACAAATGAGAGTACACCTGTTCCAAAATCCTCCAGAAATTCCCAGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGAGAGTACACCTGTTCCAAAATCCTCCAGAAATTCCCAGCTTT  400

seq1  CTCCACAGAGCACAGAGTTCTTCAGCTTCTTCATCTAAACTACCAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGAGCACAGAGTTCTTCAGCTTCTTCATCTAAACTACCAATACT  450

seq1  CCTTCTGGGCCTCTCTGCAGTTGTTTTTCAGAGGAACAGTTGGCCATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGGCCTCTCTGCAGTTGTTTTTCAGAGGAACAGTTGGCCATGTT  500

seq1  TTTTGTGGTGATTTGAATATGCTTGGCTGAAGGAGTGGCACTAATGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGTGATTTGAATATGCTTGGCTGAAGGAGTGGCACTAATGGGAG  550

seq1  ATATGGCCTTGTTGGATTAAGTGAGGCCTTGTTGGAGAAATTGTGTCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCCTTGTTGGATTAAGTGAGGCCTTGTTGGAGAAATTGTGTCAAC  600

seq1  TGTGCGGGTGGGCAAGGAGATCCTCCTCCTAACCACAAGGGAGCCAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGGGTGGGCAAGGAGATCCTCCTCCTAACCACAAGGGAGCCAGCCT  650

seq1  TCAGATGAAGACATAGAACTCTCAGCTCCACCTGCACCACGCCTGCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGAAGACATAGAACTCTCAGCTCCACCTGCACCACGCCTGCCTGG  700

seq1  ATGCTGCCATGTTCTCACCTTGATAATAATGGACTGACTCTCTGAACCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCCATGTTCTCACCTTGATAATAATGGACTGACTCTCTGAACCCT  750

seq1  GTAAGCCAGCCCCAATTAAATGTTCTTTTTATAAGAGTTGCCTTGGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCAGCCCCAATTAAATGTTCTTTTTATAAGAGTTGCCTTGGTCAT  800

seq1  GATGTCTGTTCACAGCATTAAGACCCTAAGAAACTCTTCAATATACCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGTTCACAGCATTAAGACCCTAAGAAACTCTTCAATATACCCTA  850

seq1  GAACCAAGATTTTCATCATCTTGTTCCTATCAGGCCGTTATTTCTTCCTC  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAACCAAGATTTTCATCATCTTGTTCCTATCAAGCCGTTATTTCTTCCTC  900

seq1  TGAAGTTTTCCCTACTCTTAATTTTAGTTAGTCACAGAAACACCCTGTAC  950
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAAG-TTTCCCTACTCTTAATTTTAGTTAGTCACAGAAACA-CCTGTAC  948

seq1  ATTTTCTTCAATT-AATTTAAATTCAACATTAATA-CCTATGT-GAAAAG  997
      ||||||||| ||| |||| |||||||||||||||| ||||||| ||||||
seq2  ATTTTCTTCCATTAAATTAAAATTCAACATTAATACCCTATGTGGAAAAG  998

seq1  ACATAAAGTCAAAAAGCTTATTAACACAGTATCTTGGCCAACAGAC-AAA  1046
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACATAAAGTCAAAAAGCTTATTAACACAGTATCTTGGCCAACAGACAAAA  1048

seq1  CTT----GGAGAAATAAACATGTTGT-GTATT  1073
      |||     || ||||||||||||||| |||||
seq2  CTTTGGAAGAAAAATAAACATGTTGTGGTATT  1080