BAC Information

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BAC

Clone NameB6Ng01-077N11
Chromosome15 (Build37)
Map Location 77,437,989 - 77,625,679
singlet/doubletdoublet
Overlap geneLOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9
Upstream geneSlc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik
Downstream geneTxn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077N11.bB6Ng01-077N11.g
ACCDH893711DH893712
length9911,156
definitionDH893711|Mus musculus domesticus DNA, BAC clone: B6Ng01-077N11, 5' end.DH893712|Mus musculus domesticus DNA, BAC clone: B6Ng01-077N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,437,989 - 77,438,971)(77,624,508 - 77,625,679)
sequence
gaattcttggattccctgaagcttacaagaatttttagtttacaaaagaa
ggtacactagcacaaccattgtattaaaatctatattgtagaaagagcag
ttaacatgtgtctgtaagagagcctttgaatctgaacaaaactacagaac
atgtttctttagtgaaattacaactaaataatctgtctcatttttaacat
ggagcctgtgattgtcctctcctaagaagagatgtcatagcatggattag
ttaatgaactgactggtgaactaacaaggtagttgatcaccttggggtaa
gggagctcgctgttttttgtgtcctagctgagaagctacagttaacactt
agtaaaaaaaaagttcggagagtataggagtcacagcaaaagcttggaac
aaacagaaaaaaaggcaaaaatataagaatctctttccattttcctatag
gctcacaagattttacagagtctgaataatgttaggtgacaggagccatg
caggaaaggctatggcaagcacgggagttttctggggatggctcaccatt
ttttgcatggttgtggtaggtatgatctgagaggcatggactccacagac
ttcatgccaggattgcttctcgctgctcatatgcctttccctgccactat
accatagcctaatgatgcctggacatcaggtcccactattgtgaagattt
cccacagaatcaatatgaagatgtactttcatgtagtattgctgtttaga
caaattgatgatttcatagatcctgataattatcttatagaaatcttgaa
ttcattcaagtaatataaagagctccccatggaataaaaagctgcaaata
gagttctgtagcatgagcgaattacagtaggagaagaaaataggcttgga
acaaattatgattaaggaaacattccttctaggttacaaatgaggccact
aatctcaataacgaatggttataaactagaaataggcaatt
gaattccagttaggccctgtgcagttcttatctcggcatggtaggatgtg
cacctgccttcccagagccccacacgctcggtggtgcccactagtcacag
atgactggcccctcgtctcctggcacaagctgggagagatgctgggaggt
cccaattggagtctccttggttgccctgagaaatctaagtgccagtgatg
tcaccccaaggccattggggtgctctgctgacctcactggcttcactgta
ctggtgtcctatgcactgtgttcactagtaagtggggtgtgtctctgcat
gcatagccggggtgccgccgcacgacacccatgtaccgtcttttggaacc
agaccagaaacaacttcttacacgccaagcttcttgggactttctgaaac
tttttccatggggtgttaggaattatatttagaaactaataaagtttctt
ttctctctccacccactactctcctctccccccccccccccattttccat
tcttcataggagacctgttttaaaaacagcactgtgaggttagaaggtct
ctggctgtggttttctgtctctgaatttggagtaaaatctatttcccagc
tatttgttgaatgcttggtatgtgactggtttttaggagggtgctgctgg
agtctctgccctggaggacaagagacaagaccctagttagagagcagtaa
aatggccctgcgtgtctcatgtctgggtttcaactttagagggaaggcag
gcctccggcgtacaaataactggggtctgtagggtgatgtgggtagaaag
ctgtgaagacatcccgtggtgggtgctctgtgcccggctcctcctccagc
tggagcgactgactggttgccccgctgtgcagtcactgcaaaggccactg
gccagtgagttgtctgctatgcctgaagctgtactgtgactttcatcctt
gacttcttgcagcggggagacatttctgggagagagcgctcttacttgca
gtgactgactttaaccgcccacactgcgaacaggcccacagacgttttat
gcgccttggctagtctggtgaatttcagagctgagcttactagaggactg
gcagggtgactggtgtagtcaggaacgcatcctgtctcctcaggtttttt
aaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_77437989_77438971
seq2: B6Ng01-077N11.b_45_1026

seq1  GAATTCTTGGATTCCCTGAAGCTTACAAGAATTTTTAGTTTACAAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGATTCCCTGAAGCTTACAAGAATTTTTAGTTTACAAAAGAA  50

seq1  GGTACACTAGCACAACCATTGTATTAAAATCTATATTGTAGAAAGAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACTAGCACAACCATTGTATTAAAATCTATATTGTAGAAAGAGCAG  100

seq1  TTAACATGTGTCTGTAAGAGAGCCTTTGAATCTGAACAAAACTACAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATGTGTCTGTAAGAGAGCCTTTGAATCTGAACAAAACTACAGAAC  150

seq1  ATGTTTCTTTAGTGAAATTACAACTAAATAATCTGTCTCATTTTTAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTTTAGTGAAATTACAACTAAATAATCTGTCTCATTTTTAACAT  200

seq1  GGAGCCTGTGATTGTCCTCTCCTAAGAAGAGATGTCATAGCATGGATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGTGATTGTCCTCTCCTAAGAAGAGATGTCATAGCATGGATTAG  250

seq1  TTAATGAACTGACTGGTGAACTAACAAGGTAGTTGATCACCTTGGGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAACTGACTGGTGAACTAACAAGGTAGTTGATCACCTTGGGGTAA  300

seq1  GGGAGCTCGCTGTTTTTTGTGTCCTAGCTGAGAAGCTACAGTTAACACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTCGCTGTTTTTTGTGTCCTAGCTGAGAAGCTACAGTTAACACTT  350

seq1  AGTAAAAAAAAAGTTCGGAGAGTATAGGAGTCACAGCAAAAGCTTGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAAAAAGTTCGGAGAGTATAGGAGTCACAGCAAAAGCTTGGAAC  400

seq1  AAACAGAAAAAAAGGCAAAAATATAAGAATCTCTTTCCATTTTCCTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAAAAAGGCAAAAATATAAGAATCTCTTTCCATTTTCCTATAG  450

seq1  GCTCACAAGATTTTACAGAGTCTGAATAATGTTAGGTGACAGGAGCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAAGATTTTACAGAGTCTGAATAATGTTAGGTGACAGGAGCCATG  500

seq1  CAGGAAAGGCTATGGCAAGCACGGGAGTTTTCTGGGGATGGCTCACCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGGCTATGGCAAGCACGGGAGTTTTCTGGGGATGGCTCACCATT  550

seq1  TTTTGCATGGTTGTGGTAGGTATGATCTGAGAGGCATGGACTCCACAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATGGTTGTGGTAGGTATGATCTGAGAGGCATGGACTCCACAGAC  600

seq1  TTCATGCCAGGATTGCTTCTCGCTGCTCATATGCCTTTCCCTGCCACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCCAGGATTGCTTCTCGCTGCTCATATGCCTTTCCCTGCCACTAT  650

seq1  ACCATAGCCTAATGATGCCTGGACATCAGGTCCCACTATTGTGAAGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGCCTAATGATGCCTGGACATCAGGTCCCACTATTGTGAAGATTT  700

seq1  CCCACAGAATCAATATGAAGATGTACTTTCATGTAGTATTGCTGTTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGAATCAATATGAAGATGTACTTTCATGTAGTATTGCTGTTTAGA  750

seq1  CAAATTGATGATTTCATAGATCCTGATAATTATCTTATAGAAATCTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGATGATTTCATAGATCCTGATAATTATCTTATAGAAATCTTGAA  800

seq1  TTCATTCAAGTAATATAAAGAGCTCCCCATGGAATAAAAAGCTGCAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCAAGTAATATAAAGAGCTCCCCATGGAATAAAAAGCTGCAAATA  850

seq1  GAGTTCTGTAGCATGAGCGAATTACAGTAGGAGAAGAAAATAGGCTTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGTAGCATGAGCGAATTACAGTAGGAGAAGAAAATAGGCTTGGA  900

seq1  ACAAATTATGATTAAGGGAAACATTCCTTCTAGGTTACAAATGAGGCCAC  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAAATTATGATTAA-GGAAACATTCCTTCTAGGTTACAAATGAGGCCAC  949

seq1  TAATCTCAATAACGAATGGTTATAAACTAGAAA  983
      |||||||||||||||||||||||||||||||||
seq2  TAATCTCAATAACGAATGGTTATAAACTAGAAA  982

seq1: chr15_77624508_77625679
seq2: B6Ng01-077N11.g_68_1223 (reverse)

seq1  ACATTTAAAAAAAAACCTGAGGGAGACAGGATGGCTGCTCAGACTACACA  50
      ||||||   ||||||||||| ||||||||||||  | | | |||||||| 
seq2  ACATTT---AAAAAACCTGA-GGAGACAGGATGCGTTC-CTGACTACACC  45

seq1  AGTCCACCCTGCCTGTCCTCTTAAGTAAGCTCAGCTCTGAAAATCCACAG  100
      ||| ||||||||| |||||||  ||||||||||||||||||| ||  |||
seq2  AGT-CACCCTGCCAGTCCTCT--AGTAAGCTCAGCTCTGAAATTCACCAG  92

seq1  ACCTAGCCAAGGCCGCATAAAACGTCTGGTGGGCTTGGTCTGCAGGTGTG  150
      | |||||||||| |||||||||||||| |||||| || || ||| |||||
seq2  A-CTAGCCAAGG-CGCATAAAACGTCT-GTGGGCCTGTTC-GCA-GTGTG  137

seq1  GGCGGTT-AAGTCAGTCACTGCAAGTAAGAGCGCTCTCTCCCAGAAATGT  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTTAAAGTCAGTCACTGCAAGTAAGAGCGCTCTCTCCCAGAAATGT  187

seq1  TCTCCCGCTGCAAGAAGGTCAAGGATGGAAAGTCACAGTACAGCTTCAGG  249
         ||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  CTCCCCGCTGCAAGAA-GTCAAGGAT-GAAAGTCACAGTACAGCTTCAGG  235

seq1  CATGGCAGACAACTCCACTGGCCAGTGGCCTTTGCAGTGACTGCACAGCG  299
      ||| |||||||||| |||||||||||||||||||||||||||||||||| 
seq2  CATAGCAGACAACT-CACTGGCCAGTGGCCTTTGCAGTGACTGCACAGC-  283

seq1  GGGGCAACCAGTCAGTCGCTCCAGCTGGAGGAGGAGCCGGGCACAGAGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAACCAGTCAGTCGCTCCAGCTGGAGGAGGAGCCGGGCACAGAGCA  333

seq1  CCCACCACGGGATGTCTTCACAGCTTTCTACCCACATCACCCTACAGACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACGGGATGTCTTCACAGCTTTCTACCCACATCACCCTACAGACC  383

seq1  CCAGTTATTTGTACGCCGGAGGCCTGCCTTCCCTCTAAAGTTGAAACCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTATTTGTACGCCGGAGGCCTGCCTTCCCTCTAAAGTTGAAACCCA  433

seq1  GACATGAGACACGCAGGGCCATTTTACTGCTCTCTAACTAGGGTCTTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGACACGCAGGGCCATTTTACTGCTCTCTAACTAGGGTCTTGTC  483

seq1  TCTTGTCCTCCAGGGCAGAGACTCCAGCAGCACCCTCCTAAAAACCAGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCCTCCAGGGCAGAGACTCCAGCAGCACCCTCCTAAAAACCAGTC  533

seq1  ACATACCAAGCATTCAACAAATAGCTGGGAAATAGATTTTACTCCAAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCAAGCATTCAACAAATAGCTGGGAAATAGATTTTACTCCAAATT  583

seq1  CAGAGACAGAAAACCACAGCCAGAGACCTTCTAACCTCACAGTGCTGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGAAAACCACAGCCAGAGACCTTCTAACCTCACAGTGCTGTTT  633

seq1  TTAAAACAGGTCTCCTATGAAGAATGGAAAATGGGGGGGGGGGGGGAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAGGTCTCCTATGAAGAATGGAAAATGGGGGGGGGGGGGGAGAG  683

seq1  GAGAGTAGTGGGTGGAGAGAGAAAAGAAACTTTATTAGTTTCTAAATATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAGTGGGTGGAGAGAGAAAAGAAACTTTATTAGTTTCTAAATATA  733

seq1  ATTCCTAACACCCCATGGAAAAAGTTTCAGAAAGTCCCAAGAAGCTTGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAACACCCCATGGAAAAAGTTTCAGAAAGTCCCAAGAAGCTTGGC  783

seq1  GTGTAAGAAGTTGTTTCTGGTCTGGTTCCAAAAGACGGTACATGGGTGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGAAGTTGTTTCTGGTCTGGTTCCAAAAGACGGTACATGGGTGTC  833

seq1  GTGCGGCGGCACCCCGGCTATGCATGCAGAGACACACCCCACTTACTAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGGCGGCACCCCGGCTATGCATGCAGAGACACACCCCACTTACTAGT  883

seq1  GAACACAGTGCATAGGACACCAGTACAGTGAAGCCAGTGAGGTCAGCAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGTGCATAGGACACCAGTACAGTGAAGCCAGTGAGGTCAGCAGA  933

seq1  GCACCCCAATGGCCTTGGGGTGACATCACTGGCACTTAGATTTCTCAGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCAATGGCCTTGGGGTGACATCACTGGCACTTAGATTTCTCAGGG  983

seq1  CAACCAAGGAGACTCCAATTGGGACCTCCCAGCATCTCTCCCAGCTTGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAGGAGACTCCAATTGGGACCTCCCAGCATCTCTCCCAGCTTGTG  1033

seq1  CCAGGAGACGAGGGGCCAGTCATCTGTGACTAGTGGGCACCACCGAGCGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGACGAGGGGCCAGTCATCTGTGACTAGTGGGCACCACCGAGCGT  1083

seq1  GTGGGGCTCTGGGAAGGCAGGTGCACATCCTACCATGCCGAGATAAGAAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTCTGGGAAGGCAGGTGCACATCCTACCATGCCGAGATAAGAAC  1133

seq1  TGCACAGGGCCTAACTGGAATTC  1172
      |||||||||||||||||||||||
seq2  TGCACAGGGCCTAACTGGAATTC  1156