BAC Information

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BAC

Clone NameB6Ng01-078E23
Chromosome15 (Build37)
Map Location 56,340,343 - 56,501,073
singlet/doubletdoublet
Overlap geneHas2
Upstream geneCol14a1, Mrpl13, Mtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
Downstream geneEG594843, LOC435442, LOC100040067, LOC100039984, BC026439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078E23.bB6Ng01-078E23.g
ACCDH894041DH894042
length1,1971,119
definitionDH894041|Mus musculus domesticus DNA, BAC clone: B6Ng01-078E23, 5' end.DH894042|Mus musculus domesticus DNA, BAC clone: B6Ng01-078E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,499,854 - 56,501,073)(56,340,343 - 56,341,468)
sequence
gaattctggagtccagcattcatacaatggctcacaaccatgcataactc
caatgccaagaactctgttgccattttctgctccctgtgcacactgcatg
gatgtcatgtacagccatacaggcaacagaagcactcatacacataaaat
ttaaaaatttatataaaatgaaccacaaaagagagaaagaaatagcaatt
tgaatttacaacaggaagaaaagacaaggacaaaattaatacgtgaccca
tgattttttagtaatggagaaacacttactaatgacaggatgctgaagct
tgtcagacagaaaggtgattatgtgaaaatgtgcaaaggttaatacctcc
aacgtatgggatctgatttcatttgattttaataatagatgagaagcaca
aagaaatgatcctctgtgctgttgtgtgaaccatgtgtacatgctgttga
tgaagacaataatgagataaacaaagaattagattggcaactaaatagga
acttacaagatttagatagagaatgaagaaaactgagagaatttagagaa
ttctctaggttctttcatctttcaaatcttaggcagtaatttctgaaagc
gcatgtgggaaaatttaggattgattattgacgcttaaaatcataactag
acattacagcccaacagcatggacgagcccagataatatcacaagaagat
gaaaataaagaagtaaaaaaattattaaaaaagagacccaaccaaccaag
cttatttcctaatacaaaaccctagaagacaagataaaggaatgacagaa
aggagggaagacaagatggggtcagaaaagagcagatttcatgctggaaa
gtagtctcagggtacttcgggacctcttggtattattaggctaaggctaa
cttttatttatctactttttctacttgcagattttaaacaagtatgattc
ctggatctcctttctcagcagcgtgagatactggatggctttaatataga
aagggcctgccagtcttatttttggctgtgtcagtgcatagcgtcttctg
ggaatgtacagaaactcctgctgcatgaattggtgagactgggtacatca
gattcatggtacatgcagtttgtggacgacgcatctacacagggtgttga
actgcctatgcactaaatacggctcgggtcagtgtccttactgaaac
gaattccaacaccttgctaacaggattgcatgtaatgctaacattcctcc
aatgtggcttagaatttttcttctattaaggaattggaggtgggaactga
caaaaattttatcatctcatacatcatatatatatatacatatatatgta
catatatatacacatatataatacatatatatgtatacacacacatatat
acatatatattgctctgttagtataaattatgttaaataatatgtgcact
taaaatagttataatagttaacaaattcaaaataagatactttaacctcc
aggtagatgtcacacatattaaagtgcacatatctgagtgtataatttga
tgagttatgatataagcatatacccataagcttatcactgacaccatgat
tataaacaacttcccttatcaaaaggaccaagttctcctgagtctccccc
ctacacacacacacacacagatagtcttcctgtcactgtaggttagttgg
tgttttctataactacatatatggaaacacattgtagattctcttctata
atttctattctgtcatattgagatgtactcatagttttaagtctatggac
ctgtaggactcacacattttttgctattaaatgtgaaccattgtgcatga
tttcgtgcaacgctttgtttaaaaatgtgcttccaattctttttctctac
tacctggggatgggatgcctggatgatataggggcatatgagattttagg
agatgatccaggtgtgttcccaactccttgttccattttaaaaccttaca
catagtgcatgaaagtccaaattcttcaaacccttatcaacctgatacag
tcagtttttagccattgtagttggtgcacagtggtaccattatgtgattt
ttatatgtggctttcagaaaactatgaatatgagcatattatagtgatct
ttatatatatctttgatactttgtctgcattacctgtttttattgggctg
tggtattctctccatgtaaattctttaatagaataggtgtagactatgat
tacaaatattttcttttggtggactctatttctccttatcgtggaataga
acggcttgagttaatccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_56499854_56501073
seq2: B6Ng01-078E23.b_43_1239 (reverse)

seq1  GTTTCAGTAAGG-CACTTGGACCGAGCCGTGTATTTAGTTGCATAGCCCA  49
      |||||||||||| ||| ||  |||||||  |||||||| |||||||  ||
seq2  GTTTCAGTAAGGACAC-TGACCCGAGCC--GTATTTAG-TGCATAG-GCA  45

seq1  GACTCAACACCCTGTTGGTAAGGTGCCTGTCGTCACCAAAACTGCATTGG  99
      |  ||||||||||||  || || |||  |||||| |  |||||||||  |
seq2  G-TTCAACACCCTGT--GT-AGATGC--GTCGTC-CACAAACTGCAT--G  86

seq1  TTACCCATGAATTCCTGATTGTA-CCAGTCTTCCACAAATTCATGCAGCA  148
      |   ||||||||  |||| |||| |||||||  ||| |||||||||||| 
seq2  T--ACCATGAAT--CTGA-TGTACCCAGTCT--CACCAATTCATGCAGC-  128

seq1  AGGAGTTTCTGTACATTCCCAGAGGACCGCTTATGCACTGGACACAGCC-  197
      ||||||||||||||||||||||| || ||| |||||||| ||||||||| 
seq2  AGGAGTTTCTGTACATTCCCAGAAGA-CGC-TATGCACT-GACACAGCCA  175

seq1  AAAATAAGACTGGCAGGCCCTTTCTATATTAAAAGCCATCCAGTATCTCA  247
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAATAAGACTGGCAGGCCCTTTCTATATT-AAAGCCATCCAGTATCTCA  224

seq1  CGCTGCTGAGGAAGGAGATCCAGGAATCATACTTGTTTAAAATCTGCAAG  297
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTGAGAAAGGAGATCCAGGAATCATACTTGTTTAAAATCTGCAAG  274

seq1  TAGAAAAAGTAGATAAATAAAAGTTAGCCTTAGCCTAATAATACCAAGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAGTAGATAAATAAAAGTTAGCCTTAGCCTAATAATACCAAGAG  324

seq1  GTCCCGAAGTACCCTGAGACTACTTTCCAGCATGAAATCTGCTCTTTTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGAAGTACCCTGAGACTACTTTCCAGCATGAAATCTGCTCTTTTCT  374

seq1  GACCCCATCTTGTCTTCCCTCCTTTCTGTCATTCCTTTATCTTGTCTTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCATCTTGTCTTCCCTCCTTTCTGTCATTCCTTTATCTTGTCTTCT  424

seq1  AGGGTTTTGTATTAGGAAATAAGCTTGGTTGGTTGGGTCTCTTTTTTAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTGTATTAGGAAATAAGCTTGGTTGGTTGGGTCTCTTTTTTAAT  474

seq1  AATTTTTTTACTTCTTTATTTTCATCTTCTTGTGATATTATCTGGGCTCG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTACTTCTTTATTTTCATCTTCTTGTGATATTATCTGGGCTCG  524

seq1  TCCATGCTGTTGGGCTGTAATGTCTAGTTATGATTTTAAGCGTCAATAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTGTTGGGCTGTAATGTCTAGTTATGATTTTAAGCGTCAATAAT  574

seq1  CAATCCTAAATTTTCCCACATGCGCTTTCAGAAATTACTGCCTAAGATTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTAAATTTTCCCACATGCGCTTTCAGAAATTACTGCCTAAGATTT  624

seq1  GAAAGATGAAAGAACCTAGAGAATTCTCTAAATTCTCTCAGTTTTCTTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGAAAGAACCTAGAGAATTCTCTAAATTCTCTCAGTTTTCTTCA  674

seq1  TTCTCTATCTAAATCTTGTAAGTTCCTATTTAGTTGCCAATCTAATTCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATCTAAATCTTGTAAGTTCCTATTTAGTTGCCAATCTAATTCTT  724

seq1  TGTTTATCTCATTATTGTCTTCATCAACAGCATGTACACATGGTTCACAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCTCATTATTGTCTTCATCAACAGCATGTACACATGGTTCACAC  774

seq1  AACAGCACAGAGGATCATTTCTTTGTGCTTCTCATCTATTATTAAAATCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACAGAGGATCATTTCTTTGTGCTTCTCATCTATTATTAAAATCA  824

seq1  AATGAAATCAGATCCCATACGTTGGAGGTATTAACCTTTGCACATTTTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATCAGATCCCATACGTTGGAGGTATTAACCTTTGCACATTTTCA  874

seq1  CATAATCACCTTTCTGTCTGACAAGCTTCAGCATCCTGTCATTAGTAAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCACCTTTCTGTCTGACAAGCTTCAGCATCCTGTCATTAGTAAGT  924

seq1  GTTTCTCCATTACTAAAAAATCATGGGTCACGTATTAATTTTGTCCTTGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCATTACTAAAAAATCATGGGTCACGTATTAATTTTGTCCTTGT  974

seq1  CTTTTCTTCCTGTTGTAAATTCAAATTGCTATTTCTTTCTCTCTTTTGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCCTGTTGTAAATTCAAATTGCTATTTCTTTCTCTCTTTTGTG  1024

seq1  GTTCATTTTATATAAATTTTTAAATTTTATGTGTATGAGTGCTTCTGTTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTTATATAAATTTTTAAATTTTATGTGTATGAGTGCTTCTGTTG  1074

seq1  CCTGTATGGCTGTACATGACATCCATGCAGTGTGCACAGGGAGCAGAAAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGGCTGTACATGACATCCATGCAGTGTGCACAGGGAGCAGAAAA  1124

seq1  TGGCAACAGAGTTCTTGGCATTGGAGTTATGCATGGTTGTGAGCCATTGT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACAGAGTTCTTGGCATTGGAGTTATGCATGGTTGTGAGCCATTGT  1174

seq1  ATGAATGCTGGACTCCAGAATTC  1220
      |||||||||||||||||||||||
seq2  ATGAATGCTGGACTCCAGAATTC  1197

seq1: chr15_56340343_56341468
seq2: B6Ng01-078E23.g_71_1189

seq1  GAATTCCAACACCTTGCTAACAGGATTGCATGTAATGCTAACATTCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACACCTTGCTAACAGGATTGCATGTAATGCTAACATTCCTCC  50

seq1  AATGTGGCTTAGAATTTTTCTTCTATTAAGGAATTGGAGGTGGGAACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGCTTAGAATTTTTCTTCTATTAAGGAATTGGAGGTGGGAACTGA  100

seq1  CAAAAATTTTATCATCTCATACATCATATATATATATACATATATATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTTTATCATCTCATACATCATATATATATATACATATATATGTA  150

seq1  CATATATATACACATATATAATACATATATATGTATACACACACATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATACACATATATAATACATATATATGTATACACACACATATAT  200

seq1  ACATATATATTGCTCTGTTAGTATAAATTATGTTAAATAATATGTGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATTGCTCTGTTAGTATAAATTATGTTAAATAATATGTGCACT  250

seq1  TAAAATAGTTATAATAGTTAACAAATTCAAAATAAGATACTTTAACCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGTTATAATAGTTAACAAATTCAAAATAAGATACTTTAACCTCC  300

seq1  AGGTAGATGTCACACATATTAAAGTGCACATATCTGAGTGTATAATTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATGTCACACATATTAAAGTGCACATATCTGAGTGTATAATTTGA  350

seq1  TGAGTTATGATATAAGCATATACCCATAAGCTTATCACTGACACCATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTATGATATAAGCATATACCCATAAGCTTATCACTGACACCATGAT  400

seq1  TATAAACAACTTCCCTTATCAAAAGGACCAAGTTCTCCTGAGTCTCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAACTTCCCTTATCAAAAGGACCAAGTTCTCCTGAGTCTCCCCC  450

seq1  CTACACACACACACACACAGATAGTCTTCCTGTCACTGTAGGTTAGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACACACACACACAGATAGTCTTCCTGTCACTGTAGGTTAGTTGG  500

seq1  TGTTTTCTATAACTACATATATGGAAACACATTGTAGATTCTCTTCTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTATAACTACATATATGGAAACACATTGTAGATTCTCTTCTATA  550

seq1  ATTTCTATTCTGTCATATTGAGATGTACTCATAGTTTTAAGTCTATGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATTCTGTCATATTGAGATGTACTCATAGTTTTAAGTCTATGGAC  600

seq1  CTGTAGGACTCACACATTTTTTGCTATTAAATGTGAACCATTGTGCATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGACTCACACATTTTTTGCTATTAAATGTGAACCATTGTGCATGA  650

seq1  TTTCGTGCAACGCTTTGTTTAAAAATGTGCTTCCAATTCTTTTTCTCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTGCAACGCTTTGTTTAAAAATGTGCTTCCAATTCTTTTTCTCTAC  700

seq1  TACCTGGGGATGGGATGCCTGGATGATATAGGGGCATATGAGATTTTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGGATGGGATGCCTGGATGATATAGGGGCATATGAGATTTTAGG  750

seq1  AGATGATCCAGGTGTGTTCCCAACTCCTTGTTCCATTTTAAAACCTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATCCAGGTGTGTTCCCAACTCCTTGTTCCATTTTAAAACCTTACA  800

seq1  CATAGTGCATGAAAGTCCAAATTCTTCAAACCCTTATCAACCTGATACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGCATGAAAGTCCAAATTCTTCAAACCCTTATCAACCTGATACAG  850

seq1  TCAGTTTTTAGCCATTGTAGTTGGTGCACAGTGGTACCATTATGTGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTTAGCCATTGTAGTTGGTGCACAGTGGTACCATTATGTGATTT  900

seq1  TTATATGTGGCTTTCAGAAAACTATGAATATTAAGCATATTTATAGGTGA  950
      |||||||||||||||||||||||||||||| | |||||| ||||| ||||
seq2  TTATATGTGGCTTTCAGAAAACTATGAATA-TGAGCATA-TTATA-GTGA  947

seq1  TTCTTTATATATATCTTTGATAACTTTGTCTGCATTTACCTGTTTTTATT  1000
       |||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  -TCTTTATATATATCTTTGAT-ACTTTGTCTGCA-TTACCTGTTTTTATT  994

seq1  GGGCTGT-GTATTCTC-CCATGTTAAATTCTTTAATAG-ATAGGTGGTAG  1047
      ||||||| |||||||| ||||| ||||||||||||||| |||||| ||||
seq2  GGGCTGTGGTATTCTCTCCATG-TAAATTCTTTAATAGAATAGGT-GTAG  1042

seq1  ACATATGATTTACAAATATTTTCTTTTGGTTGACTCTATTTCT-CTTATC  1096
      || ||||| ||||||||||||||||||||| |||||||||||| ||||||
seq2  AC-TATGA-TTACAAATATTTTCTTTTGGTGGACTCTATTTCTCCTTATC  1090

seq1  AGTTGAATAGACAGTTTAGAGTTAATCCAA  1126
       || |||||||  |  | ||||||||||||
seq2  -GTGGAATAGAACGGCTTGAGTTAATCCAA  1119