BAC Information

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BAC

Clone NameB6Ng01-078G01
Chromosome15 (Build37)
Map Location 56,897,524 - 57,019,900
singlet/doubletdoublet
Overlap genenone
Upstream geneHba-ps3, Has2, EG594843, LOC435442, LOC100040067, LOC100039984
Downstream geneBC026439, Zhx2, Derl1, Wdr67, BC030396, 9130401M01Rik, Zhx1, Atad2, LOC665244, 2410187C16Rik, Fbxo32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078G01.bB6Ng01-078G01.g
ACCDH894092DH894093
length1,175539
definitionDH894092|Mus musculus domesticus DNA, BAC clone: B6Ng01-078G01, 5' end.DH894093|Mus musculus domesticus DNA, BAC clone: B6Ng01-078G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,897,524 - 56,898,713)(57,019,352 - 57,019,900)
sequence
gaattctgtcatattagggatttggatttcaacatataaagtttggagat
atacagtctatagtagaactgaacaaagttatattaggttttaacagtga
ataatgttcatgtcaagtgagagaaaacctgaattgtaatttatttagat
aatattttataattattgaatatctggatctcagtcaggcagtgtattca
tatgaggtgatgtctttctataatacatttgcacctaggacataaattgt
accttgatcagtaccatttcttttcatcaactatagtaaagccatgaggg
agtttaataactttatattatggtcagtcattgttttcattcccatttcc
tggtcactttgaactcatgatcatggcttcattcctctactacttagtcg
tctctattctaccttccttcatactatctcagactacaagcttcattacc
agacttcaaaaattcaagttctcagatgtccaatttattgtacattgata
atactccaagtaagctggcaacctaactggcataacagtgagttagatgc
atgttctgcagattccaacatttcccttacctgtgctgtcaaccaatttc
atcttggtaaccaggactggttacctcttcctttgcaattataccatcta
agctttttactttaacgcaataaagaatttgaaacattaaaataacataa
tcatttctactttgtaaagcagcaattggccacagctcatcagaaacatc
aacctttaaaatatattttttagagaaagatgcaaacattttgatagact
taggaaaacaatgaactgaatccttctaaaatttatatctataagtgcaa
gaatagatagcaaagaaatcttagcatataatggctagaaggtagatttt
gaagagtttaatattactcagtcagtaacaatgaaaattctggattctct
cgtctcttcctacctgaatgcagcaagtattcatcaatatggtgtattta
tttcctctatgtaaagggtaatataggtgtcaccgtactgtagatgagat
aggttggattattttaaagtacctaccaattattagctatgtaatctaca
gcactataataatttacttacttcatcacctctggtgtgaattcatctac
tactggtatcagttacaaaccttct
gaattctgttctttatgtgacacatgtttataggcagcaacctggaaaaa
acagtctgggttgggtctcaacagctgccatctgctgattcctggcattt
cctaggaagtcccatgggagtggagtaatgggtgaatgtttctggtgtta
gtgaacgggggaacaaaacagagaatgatgtcaggcttgtaaaagcctca
gtcactggagtgggagtcactaacataggaattgaactgcactgttagaa
gaaagagaatatagccattcactgggcttacactgtgcaaagaacattgt
ccctgccccctctttgttatgtctgtggtgacagtgacctcagtgtttgg
ccttgatgccatgacaacagcatctgggtgctctcagcaggaagtattgc
ctaaatgtgagctgatagcaaaagaagaattgggaactcagagataaatc
ctgtctggtttgtaatggagtaatatatatatatatatatatatatatat
atatatatatatatatatatatatatatagatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_56897524_56898713
seq2: B6Ng01-078G01.b_45_1219

seq1  GAATTCTGTCATATTAGGGATTTGGATTTCAACATATAAAGTTTGGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCATATTAGGGATTTGGATTTCAACATATAAAGTTTGGAGAT  50

seq1  ATACAGTCTATAGTAGAACTGAACAAAGTTATATTAGGTTTTAACAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTCTATAGTAGAACTGAACAAAGTTATATTAGGTTTTAACAGTGA  100

seq1  ATAATGTTCATGTCAAGTGAGAGAAAACCTGAATTGTAATTTATTTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTCATGTCAAGTGAGAGAAAACCTGAATTGTAATTTATTTAGAT  150

seq1  AATATTTTATAATTATTGAATATCTGGATCTCAGTCAGGCAGTGTATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTATAATTATTGAATATCTGGATCTCAGTCAGGCAGTGTATTCA  200

seq1  TATGAGGTGATGTCTTTCTATAATACATTTGCACCTAGGACATAAATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGTGATGTCTTTCTATAATACATTTGCACCTAGGACATAAATTGT  250

seq1  ACCTTGATCAGTACCATTTCTTTTCATCAACTATAGTAAAGCCATGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGATCAGTACCATTTCTTTTCATCAACTATAGTAAAGCCATGAGGG  300

seq1  AGTTTAATAACTTTATATTATGGTCAGTCATTGTTTTCATTCCCATTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATAACTTTATATTATGGTCAGTCATTGTTTTCATTCCCATTTCC  350

seq1  TGGTCACTTTGAACTCATGATCATGGCTTCATTCCTCTACTACTTAGTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTTTGAACTCATGATCATGGCTTCATTCCTCTACTACTTAGTCG  400

seq1  TCTCTATTCTACCTTCCTTCATACTATCTCAGACTACAAGCTTCATTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTCTACCTTCCTTCATACTATCTCAGACTACAAGCTTCATTACC  450

seq1  AGACTTCAAAAATTCAAGTTCTCAGATGTCCAATTTATTGTACATTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAAAAATTCAAGTTCTCAGATGTCCAATTTATTGTACATTGATA  500

seq1  ATACTCCAAGTAAGCTGGCAACCTAACTGGCATAACAGTGAGTTAGATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCAAGTAAGCTGGCAACCTAACTGGCATAACAGTGAGTTAGATGC  550

seq1  ATGTTCTGCAGATTCCAACATTTCCCTTACCTGTGCTGTCAACCAATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGCAGATTCCAACATTTCCCTTACCTGTGCTGTCAACCAATTTC  600

seq1  ATCTTGGTAACCAGGACTGGTTACCTCTTCCTTTGCAATTATACCATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGTAACCAGGACTGGTTACCTCTTCCTTTGCAATTATACCATCTA  650

seq1  AGCTTTTTACTTTAACGCAATAAAGAATTTGAAACATTAAAATAACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTACTTTAACGCAATAAAGAATTTGAAACATTAAAATAACATAA  700

seq1  TCATTTCTACTTTGTAAAGCAGCAATTGGCCACAGCTCATCAGAAACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTACTTTGTAAAGCAGCAATTGGCCACAGCTCATCAGAAACATC  750

seq1  AACCTTTAAAATATATTTTTTAGAGAAAGATGCAAACATTTTGATAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTAAAATATATTTTTTAGAGAAAGATGCAAACATTTTGATAGACT  800

seq1  TAGGAAAACAATGAACTGAATCCTTCTAAAATTTATATCTATAAGTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAACAATGAACTGAATCCTTCTAAAATTTATATCTATAAGTGCAA  850

seq1  GAATAGATAGCAAAGAAATCTTAGCATATAATGGCTAGAAGGTAGATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATAGCAAAGAAATCTTAGCATATAATGGCTAGAAGGTAGATTTT  900

seq1  GAAGAGTTTAAATATTACTCAGTCAGTAACAATGAAAATTCTGGATTCTC  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTT-AATATTACTCAGTCAGTAACAATGAAAATTCTGGATTCTC  949

seq1  TCGTCTCTTCCTACCTGAAATGCAGCAAGTAATTCATCAATATTGGTGTA  1000
      ||||||||||||||||| |||||||||||| ||||||||||| |||||||
seq2  TCGTCTCTTCCTACCTG-AATGCAGCAAGT-ATTCATCAATA-TGGTGTA  996

seq1  TTTATTTCCTCTATGTAAAGGGTAATAATAGTGTCAACCGTACTGTAGAT  1050
      |||||||||||||||||||||||||||   ||||| ||||||||||||||
seq2  TTTATTTCCTCTATGTAAAGGGTAATATAGGTGTC-ACCGTACTGTAGAT  1045

seq1  GAGATTAGGTTGAATATTTTAAAAGTACCTACCATATTATTAGCTATGTA  1100
      |||| ||||||| ||  ||| ||||||||||||| |||||||||||||| 
seq2  GAGA-TAGGTTGGATTATTTTAAAGTACCTACCA-ATTATTAGCTATGT-  1092

seq1  AATCTACCAGCACCTATTAATATATTTATCTTACTATCATCA-CTCTTGT  1149
      |||||| ||||| ||| ||||| ||||| |||||| |||||| |||| ||
seq2  AATCTA-CAGCA-CTA-TAATA-ATTTA-CTTACT-TCATCACCTCTGGT  1136

seq1  TGTAATTCATCTTACTACTGGTATTCAGTTAACAAACTTCT  1190
         |||||||| ||||||||||| |||||||  || |||||
seq2  GTGAATTCATC-TACTACTGGTA-TCAGTTACAAACCTTCT  1175

seq1: chr15_57019352_57019900
seq2: B6Ng01-078G01.g_68_606 (reverse)

seq1  TATATATATACATATGTGTATATATATATATATATATATATATATATATA  50
        ||||||||        | ||||||||||||||||||||||||||||||
seq2  --TATATATA--------TCTATATATATATATATATATATATATATATA  40

seq1  TATATATATATATATATATATATATATTACTCCATTACAAACCAGACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATTACTCCATTACAAACCAGACAGG  90

seq1  ATTTATCTCTGAGTTCCCAATTCTTCTTTTGCTATCAGCTCACATTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTCTGAGTTCCCAATTCTTCTTTTGCTATCAGCTCACATTTAGG  140

seq1  CAATACTTCCTGCTGAGAGCACCCAGATGCTGTTGTCATGGCATCAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTTCCTGCTGAGAGCACCCAGATGCTGTTGTCATGGCATCAAGGC  190

seq1  CAAACACTGAGGTCACTGTCACCACAGACATAACAAAGAGGGGGCAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTGAGGTCACTGTCACCACAGACATAACAAAGAGGGGGCAGGGA  240

seq1  CAATGTTCTTTGCACAGTGTAAGCCCAGTGAATGGCTATATTCTCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTCTTTGCACAGTGTAAGCCCAGTGAATGGCTATATTCTCTTTCT  290

seq1  TCTAACAGTGCAGTTCAATTCCTATGTTAGTGACTCCCACTCCAGTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAGTGCAGTTCAATTCCTATGTTAGTGACTCCCACTCCAGTGACT  340

seq1  GAGGCTTTTACAAGCCTGACATCATTCTCTGTTTTGTTCCCCCGTTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTTACAAGCCTGACATCATTCTCTGTTTTGTTCCCCCGTTCACT  390

seq1  AACACCAGAAACATTCACCCATTACTCCACTCCCATGGGACTTCCTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAGAAACATTCACCCATTACTCCACTCCCATGGGACTTCCTAGGA  440

seq1  AATGCCAGGAATCAGCAGATGGCAGCTGTTGAGACCCAACCCAGACTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGGAATCAGCAGATGGCAGCTGTTGAGACCCAACCCAGACTGTT  490

seq1  TTTTCCAGGTTGCTGCCTATAAACATGTGTCACATAAAGAACAGAATTC  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGGTTGCTGCCTATAAACATGTGTCACATAAAGAACAGAATTC  539