BAC Information

Click to search

BAC

Clone NameB6Ng01-078M22
Chromosome15 (Build37)
Map Location 8,316,693 - 8,516,920
singlet/doubletdoublet
Overlap geneNipbl, EG666437, LOC100039560, LOC100039633
Upstream geneEgflam, Gdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599
Downstream geneSlc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078M22.bB6Ng01-078M22.g
ACCDH894405DH894406
length9941,069
definitionDH894405|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M22, 5' end.DH894406|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,316,693 - 8,317,689)(8,515,855 - 8,516,920)
sequence
gaattctgagaaagtttatactgagacatcatcattcctgctcaaaagat
aaaaaacattaaatattattttctttttactataaagactcaactcgttc
ttttaaaaatgtttaaaagttctgttctaccagaatgattttgtttgggg
ggaagcaatatatagctactagcaaaactaaatttcaagcacaattttat
aaaaacacaactttaataccactagtctaatactgaaataagaaatgatg
tcagtgatatttgtagaactaggaattgacacaggacatcatatacacta
ggcagatgctctaacattgagttaatatccccaaactcacattcatattc
tggtatcatttagacttggaactagaacgaaattttaaatcacttcacct
agctattgtcaaaatactatatgctttcttttgatatatgcctctgtttt
attattgttgttagtatacataaatctgtctctctcaaatatactcttgt
gtgtgtgtgtgtgtgtgtgcgcgtgcacacgcacattcattcattcattc
attcatttttttttttttttttttttttttaagacagggtttccctgtgt
agccctggctgtcctggaactcactctgtagaccaggttggcctcgaact
tagaaattcacctgcttctgcctcccaagtgctgggattaaaggcgtgcg
tcaccactgctaggccagaaatatattttaacatatactttcccctatgc
ttaggaacttaattttcacaacattggttcatacctaagttttttaatta
atttatctatgtaccaaatttgagttcctgcaaattatcccaaattctat
taacaaagcatgatgttcctattttcttcttccaaattaccttttttgct
ctttgtgtggatataagaatattttcaacagtaaattaaaacatgagatt
agcttcacttttaatatttataatatcttaggtgtatgaatatt
gaattctgttggatctgcccaggcagaataaccccacgtaactatcacag
gctccgagactcctcccacatcacagacggttactttttttttggttttt
cgagacagggtttctctgtagccctggctgtcctagaactcactctgtag
accaggctggcctcgaactcagaaatccgcctgcctctgcctcctgagtg
ctgggattaaaggcgtgcaccaccatgcccggcttcagactgtaactttt
ataaagtcattctgttcttaagagttattgatctgtaagccaaatatttt
caggctaggtttcacttggtgggctgtaatagcttcagtttactctgtca
agagctctgagttccttagctagacattaatcacgtgaatcgtgtggact
gagttccagggaaaagcagggtggggatgcctcatcactcggtgactagg
aagatcattacaattttaaaaattcatttactttcccatctgctcgtttc
cacctattcatttatttttttcccatttattttgatggcgaatgtcacta
gaacagagaggttctccccccccccacccccccattgctctgtgactgct
ctgcccctaagggcttaggatagaccccggaaaacagcaagtgctcacta
agtatttttactagatctgaattgaattgagttggtgcttactttaaaga
ttattattatataaccagtgtggacactgatgcccgtgcatgcctgatgc
caaaagtctttagcaagcaacctgcttgtgctttttcctcaccactaaag
tctttactttccggattgatgcagtgagaggcaacccttactgtaaggat
agggtgtggaagagcagggaaagacatccagtagctaattacagagggag
actagactgcaaaaaagtagcaagaccaaacaccacagagaacagcaggc
ttagaatgtcagttgctagctatgaataagcgttctaggtgcaagaaacc
caagttctcgggtcactataatacggcagctaatactttccggtgcatac
ttatgaggccaggcactat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_8316693_8317689
seq2: B6Ng01-078M22.b_45_1038

seq1  GAATTCTGAGAAAGTTTATACTGAGACATCATCATTCCTGCTCAAAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGAAAGTTTATACTGAGACATCATCATTCCTGCTCAAAAGAT  50

seq1  AAAAAACATTAAATATTATTTTCTTTTTACTATAAAGACTCAACTCGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACATTAAATATTATTTTCTTTTTACTATAAAGACTCAACTCGTTC  100

seq1  TTTTAAAAATGTTTAAAAGTTCTGTTCTACCAGAATGATTTTGTTTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAATGTTTAAAAGTTCTGTTCTACCAGAATGATTTTGTTTGGGG  150

seq1  GGAAGCAATATATAGCTACTAGCAAAACTAAATTTCAAGCACAATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAATATATAGCTACTAGCAAAACTAAATTTCAAGCACAATTTTAT  200

seq1  AAAAACACAACTTTAATACCACTAGTCTAATACTGAAATAAGAAATGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACAACTTTAATACCACTAGTCTAATACTGAAATAAGAAATGATG  250

seq1  TCAGTGATATTTGTAGAACTAGGAATTGACACAGGACATCATATACACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATATTTGTAGAACTAGGAATTGACACAGGACATCATATACACTA  300

seq1  GGCAGATGCTCTAACATTGAGTTAATATCCCCAAACTCACATTCATATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGCTCTAACATTGAGTTAATATCCCCAAACTCACATTCATATTC  350

seq1  TGGTATCATTTAGACTTGGAACTAGAACGAAATTTTAAATCACTTCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCATTTAGACTTGGAACTAGAACGAAATTTTAAATCACTTCACCT  400

seq1  AGCTATTGTCAAAATACTATATGCTTTCTTTTGATATATGCCTCTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTGTCAAAATACTATATGCTTTCTTTTGATATATGCCTCTGTTTT  450

seq1  ATTATTGTTGTTAGTATACATAAATCTGTCTCTCTCAAATATACTCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTTGTTAGTATACATAAATCTGTCTCTCTCAAATATACTCTTGT  500

seq1  GTGTGTGTGTGTGTGTGTGCGCGTGCACACGCACATTCATTCATTCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGCGCGTGCACACGCACATTCATTCATTCATTC  550

seq1  ATTCATTTTTTTTTTTTTTTTTTTTTTTTTAAGACAGGGTTTCCCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTTTTTTTTTTTTTTTTTTTTTTAAGACAGGGTTTCCCTGTGT  600

seq1  AGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGCCTCGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGCCTCGAACT  650

seq1  TAAAAATTCACCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCG  700
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTCACCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCG  700

seq1  TCACCACTGCTAGGCCAGAAATATATTTTAACATATAC-TTCCCCTATGC  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCACCACTGCTAGGCCAGAAATATATTTTAACATATACTTTCCCCTATGC  750

seq1  TTAGGAACTTAA-TTTCACAACATTGTTTCATACCTAAGTTTTTAAATTA  798
      |||||||||||| ||||||||||||| ||||||||||||||||| |||||
seq2  TTAGGAACTTAATTTTCACAACATTGGTTCATACCTAAGTTTTTTAATTA  800

seq1  ATTTATCTATGTACCAAAATTGAGTTCCTGCAAATTATCCAAAATTCTAT  848
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  ATTTATCTATGTACCAAATTTGAGTTCCTGCAAATTATCCCAAATTCTAT  850

seq1  TAACAAAGCATGATGTTCCTA-TTTCTTCTTCCAAAATAACTTTTTTGCT  897
      ||||||||||||||||||||| |||||||||||||| || ||||||||||
seq2  TAACAAAGCATGATGTTCCTATTTTCTTCTTCCAAATTACCTTTTTTGCT  900

seq1  CTTTAGTGTGGATTATAAGAATA-TTTCAACAGTAAATTAAAACATGAGA  946
      |||| ||||||| |||||||||| ||||||||||||||||||||||||||
seq2  CTTT-GTGTGGA-TATAAGAATATTTTCAACAGTAAATTAAAACATGAGA  948

seq1  TTAGCTTTCACTTTTTAATATTTAATATATATCTTTATGTGTATGAATAT  996
      ||||| ||||| ||||||||||| ||| ||||| ||| ||||||||||||
seq2  TTAGC-TTCAC-TTTTAATATTT-ATA-ATATC-TTAGGTGTATGAATAT  993

seq1  T  997
      |
seq2  T  994

seq1: chr15_8515855_8516920
seq2: B6Ng01-078M22.g_70_1138 (reverse)

seq1  ATAGTGCCTGG-CTCAT-AGTATGCACCCGGAAAGTATTAGCTGCGGTTA  48
      ||||||||||| ||||| |||||||| |||||||||||||||||| | ||
seq2  ATAGTGCCTGGCCTCATAAGTATGCA-CCGGAAAGTATTAGCTGCCG-TA  48

seq1  TTATAGTGGACCGAGAACTGGGGTTTCTTGCCACTTAGAAACGCTTAATT  98
      ||||||||  ||||||||| |||||||||| ||| ||| ||||||| |||
seq2  TTATAGTGACCCGAGAACTTGGGTTTCTTG-CACCTAG-AACGCTT-ATT  95

seq1  CATAGCTAGCAACTGACATTCT-AGGCTGCTGTTCTCTGGTGTGTTTGGT  147
      |||||||||||||||||||||| || |||||||||||||  |||||||||
seq2  CATAGCTAGCAACTGACATTCTAAGCCTGCTGTTCTCTGTGGTGTTTGGT  145

seq1  CTTGCTACTTTTTTGCAGTCTAGTCTCCCTCTGT-ATTTGCTACTGGATG  196
      |||||||||||||||||||||||||||||||||| ||| |||||||||||
seq2  CTTGCTACTTTTTTGCAGTCTAGTCTCCCTCTGTAATTAGCTACTGGATG  195

seq1  TCTTT-CCTGCTCTT-CACA-CCTATCCTTACAGTAAGGGTTGCCTCTCA  243
      ||||| ||||||||| |||| |||||||||||||||||||||||||||||
seq2  TCTTTCCCTGCTCTTCCACACCCTATCCTTACAGTAAGGGTTGCCTCTCA  245

seq1  CTGCATC-ATCCGGAAAGTAAAGACTTTAGTGGTGAGGAAAAAGCACAAG  292
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCAATCCGGAAAGTAAAGACTTTAGTGGTGAGGAAAAAGCACAAG  295

seq1  CAGGTTGCTTGCTAAAGACTTTTGGCATCAGGCATGCACGGGCATCAGTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGCTTGCTAAAGACTTTTGGCATCAGGCATGCACGGGCATCAGTG  345

seq1  TCCACACTGGTTATATAATAATAATCTTTGAAGTAAGCACCAACTCAATT  392
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCACACTGGTTATATAATAATAATCTTTAAAGTAAGCACCAACTCAATT  395

seq1  CAATTCAGATCTAGTAAAAATACTTAGTGAGCACTTGCTGTTTTCCGGGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAGATCTAGTAAAAATACTTAGTGAGCACTTGCTGTTTTCCGGGG  445

seq1  TCTATCCTAAGCCCTTAGGGGCAGAGCAGTCACAGAGCAATGGGGGGGGG  492
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTATCCTAAGCCCTTAGGGGCAGAGCAGTCACAGAGCAATGGGGGGGTG  495

seq1  GGGGGGGGGAGAACCTCTCTGTTCTAGTGACATTCGCCATCAAAATAAAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGAGAACCTCTCTGTTCTAGTGACATTCGCCATCAAAATAAAT  545

seq1  GGGAAAAAAATAAATGAATAGGTGGAAACGAGCAGATGGGAAAGTAAATG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAAATAAATGAATAGGTGGAAACGAGCAGATGGGAAAGTAAATG  595

seq1  AATTTTTAAAATTGTAATGATCTTCCTAGTCACCGAGTGATGAGGCATCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAAATTGTAATGATCTTCCTAGTCACCGAGTGATGAGGCATCC  645

seq1  CCACCCTGCTTTTCCCTGGAACTCAGTCCACACGATTCACGTGATTAATG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTGCTTTTCCCTGGAACTCAGTCCACACGATTCACGTGATTAATG  695

seq1  TCTAGCTAAGGAACTCAGAGCTCTTGACAGAGTAAACTGAAGCTATTACA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTAAGGAACTCAGAGCTCTTGACAGAGTAAACTGAAGCTATTACA  745

seq1  GCCCACCAAGTGAAACCTAGCCTGAAAATATTTGGCTTACAGATCAATAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCAAGTGAAACCTAGCCTGAAAATATTTGGCTTACAGATCAATAA  795

seq1  CTCTTAAGAACAGAATGACTTTATAAAAGTTACAGTCTGAAGCCGGGCAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAGAACAGAATGACTTTATAAAAGTTACAGTCTGAAGCCGGGCAT  845

seq1  GGTGGTGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGAT  895

seq1  TTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCA  945

seq1  GGGCTACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAGTAACCGTCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAGTAACCGTCT  995

seq1  GTGATGTGGGAGGAGTCTCGGAGCCTGTGATAGTTACGTGGGGTTATTCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTGGGAGGAGTCTCGGAGCCTGTGATAGTTACGTGGGGTTATTCT  1045

seq1  GCCTGGGCAGATCCAACAGAATTC  1066
      ||||||||||||||||||||||||
seq2  GCCTGGGCAGATCCAACAGAATTC  1069