BAC Information

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BAC

Clone NameB6Ng01-079J11
Chromosome15 (Build37)
Map Location 85,656,913 - 85,894,789
singlet/doubletdoublet
Overlap geneAW124722, Gtse1, Trmu, Celsr1, BC021523
Upstream genePhf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej
Downstream geneCerk, LOC100042300, Tbc1d22a, LOC100042309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079J11.bB6Ng01-079J11.g
ACCDH894956DH894957
length1,0491,009
definitionDH894956|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J11, 5' end.DH894957|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,656,913 - 85,657,968)(85,893,776 - 85,894,789)
sequence
gaattcagttttcgtgataacgaagccacaaaatgcaaattcactagtgt
tatgcccagatttcgaaactccagagaccaccaggacaccgtcactctga
tgcagtttacatgagggtttatttgagctcaggcctgcaaaccttccctg
atgcagcagattaggtgagcaaccacaaggtttaggggaaggggttttta
aagaagaaaaaaacacaggtctctacgtcttggcattatatgattgagta
agaggtttatggacaagttgactttttaaaatgattgacttgtttttggc
tccatggctacagacagctctggcccggccacctggatctcctgagtgca
aagcatgtaggagagggagggttgtcaggaaacgttatctattggagcct
gcaactcccagcagctgcagctggcccgatatgtttcaccttgggacttg
tttgtttgtttaaacttacatttctgggcctctgattaagtctctcaatt
agcattattgacttgaataaaacaagatttggaatattaaaaaaaataaa
gctgaagatgcaacatgattaacttcaggcgtgaggggaggcatgaagaa
aatcgagaggaagagtctgaggaattgactgaggggcctctctgaggagg
tgcctgcatgagatgagggaacaggtttcacaaacaactccaggacagca
tcccaagggaaagaaggagtaggacgaaggtgagacactgagtctggagg
aaagtgatggggggaggggcaacagggttgagccagagctgtaaggagag
gtcacgctagtgtccgtctgatggctctgagtggagaaggggcctgctct
cttgtgcaaagtgaagaattccgagacagcaagctcagagcagttaagca
gtatggggttttaagacatagatctgtgtcactcactgccgcggtggtgc
tgcctgtcacacaagcctcttttggtcacatctggtaaaatctgtatcag
gggctcggccttgggtacactcggagaattgctgctttgacatcccagt
gaattcacacacacacttcctcttcctccatttgaggggggtctagaagc
aaccaaaccccaatagcaaccagcactagatctgggtttctttgtttggt
ttggtttggtttttttcgagacagggtttctctgtgtagccctggctgtc
ctggaactcactctgtaaaccaggctggcctcgaactcagaaatccgcct
gcctctgcctcccgagtgctaggattaaaggcgtgcgccaccaccgcccg
gctagatctgggtttctgatgctgtctatagaatgggcagaccctaggtt
tgaacctggaatgtcctatggatcaaacagggaagagattaggatcttgc
agggatgtggcatctacaggacccagggtagtaatagcaaaagaagagag
taaggaaagcagccaggtggaattgcacaataaagtataaagatatgaat
caacccgagtagaaatcaatgattaataagtcgctacgtgaaagagaagc
aattcccctatccacacaaaattccaaatgatttgggttcttggcctata
ggagagtagcacagagccccttttcccttggccacccttcccacatccat
caccccagactgatcatgacaaaaccatctaaatctaaatagcagattcc
caagcgatatgcaggctccaacacagcgccccacgggccaccacattcct
caaggaggcaaccaaagtctgagacagggtcacagtcagaggagcctaag
gaaatacgacaaccagacatatatgggacctggatggggctctgggacag
aaacaaaggcttgaggtaaagatgaaggaaacaagaactttttgctgata
ccatggatggaaacagagattgtcacctaacctgatgaccggagttcatc
cctagggacagagaaccccatggtagaaggagagcactgacttccagaag
ttgtgtctggcatccacactatgctgtgacacttcgtacccacacatacg
aaacaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_85656913_85657968
seq2: B6Ng01-079J11.b_47_1095

seq1  GAATTCAGTTTTCGTGATAACGAAGCCACAAAATGCAAATTCACTAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTCGTGATAACGAAGCCACAAAATGCAAATTCACTAGTGT  50

seq1  TATGCCCAGATTTCGAAACTCCAGAGACCACCAGGACACCGTCACTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCAGATTTCGAAACTCCAGAGACCACCAGGACACCGTCACTCTGA  100

seq1  TGCAGTTTACATGAGGGTTTATTTGAGCTCAGGCCTGCAAACCTTCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTACATGAGGGTTTATTTGAGCTCAGGCCTGCAAACCTTCCCTG  150

seq1  ATGCAGCAGATTAGGTGAGCAACCACAAGGTTTAGGGGAAGGGGTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCAGATTAGGTGAGCAACCACAAGGTTTAGGGGAAGGGGTTTTTA  200

seq1  AAGAAGAAAAAAACACAGGTCTCTACGTCTTGGCATTATATGATTGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAAAAACACAGGTCTCTACGTCTTGGCATTATATGATTGAGTA  250

seq1  AGAGGTTTATGGACAAGTTGACTTTTTAAAATGATTGACTTGTTTTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTTATGGACAAGTTGACTTTTTAAAATGATTGACTTGTTTTTGGC  300

seq1  TCCATGGCTACAGACAGCTCTGGCCCGGCCACCTGGATCTCCTGAGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCTACAGACAGCTCTGGCCCGGCCACCTGGATCTCCTGAGTGCA  350

seq1  AAGCATGTAGGAGAGGGAGGGTTGTCAGGAAACGTTATCTATTGGAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTAGGAGAGGGAGGGTTGTCAGGAAACGTTATCTATTGGAGCCT  400

seq1  GCAACTCCCAGCAGCTGCAGCTGGCCCGATATGTTTCACCTTGGGACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCCCAGCAGCTGCAGCTGGCCCGATATGTTTCACCTTGGGACTTG  450

seq1  TTTGTTTGTTTAAACTTACATTTCTGGGCCTCTGATTAAGTCTCTCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTAAACTTACATTTCTGGGCCTCTGATTAAGTCTCTCAATT  500

seq1  AGCATTATTGACTTGAATAAAACAAGATTTGGAATATTAAAAAAAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATTGACTTGAATAAAACAAGATTTGGAATATTAAAAAAAATAAA  550

seq1  GCTGAAGATGCAACATGATTAACTTCAGGCGTGAGGGGAGGCATGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGATGCAACATGATTAACTTCAGGCGTGAGGGGAGGCATGAAGAA  600

seq1  AATCGAGAGGAAGAGTCTGAGGAATTGACTGAGGGGCCTCTCTGAGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGAGAGGAAGAGTCTGAGGAATTGACTGAGGGGCCTCTCTGAGGAGG  650

seq1  TGCCTGCATGAGATGAGGGAACAGGTTTCACAAACAACTCCAGGACAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCATGAGATGAGGGAACAGGTTTCACAAACAACTCCAGGACAGCA  700

seq1  TCCCAAGGGAAAGAAGGAGTAGGACGAAGGTGAGACACTGAGTCTGGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGGAAAGAAGGAGTAGGACGAAGGTGAGACACTGAGTCTGGAGG  750

seq1  AAAGTGATGGGGGGAGGGGCAACAGGG-TGAGCCAGAGCTGTAAGGAGAG  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAGTGATGGGGGGAGGGGCAACAGGGTTGAGCCAGAGCTGTAAGGAGAG  800

seq1  GTCACGCTAGTGTCCGTCTGAGGGCTCTGAGTGGAGAAGGGGCCTGCTCT  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTCACGCTAGTGTCCGTCTGATGGCTCTGAGTGGAGAAGGGGCCTGCTCT  850

seq1  CTTGTGCAAAGTGAAGAATTCCGAGACAGCAAGCTCAGAGCAGTAAAGCA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTGTGCAAAGTGAAGAATTCCGAGACAGCAAGCTCAGAGCAGTTAAGCA  900

seq1  GGTATGGGGTTATCAAGACATAGATCTGTGTTCACTCACTGCCGCGGTGG  949
       |||||||||| | |||||||||||||||| |||||||||||||||||||
seq2  -GTATGGGGTT-TTAAGACATAGATCTGTG-TCACTCACTGCCGCGGTGG  947

seq1  TGCTGGCTGGTCACCACAAAGCCTCTTTTGGTCACATCTGGTAAGATCTG  999
      ||||| || |||| ||| |||||||||||||||||||||||||| |||||
seq2  TGCTGCCT-GTCA-CAC-AAGCCTCTTTTGGTCACATCTGGTAAAATCTG  994

seq1  TATCAGGGGGCTCGGCCTTGGGTACACATTGGGAG-ATTGCTGCTTTGAC  1048
      ||||| |||||||||||||||||||||  | |||| ||||||||||||||
seq2  TATCA-GGGGCTCGGCCTTGGGTACAC--TCGGAGAATTGCTGCTTTGAC  1041

seq1  ATCCCAGT  1056
      ||||||||
seq2  ATCCCAGT  1049

seq1: chr15_85893776_85894789
seq2: B6Ng01-079J11.g_67_1075 (reverse)

seq1  CACTTGTGTTCGTATGTGTGGGTACGAAGTGCCACAGCATAGGTGTGGAT  50
      ||||||| ||||||||||||||||||||||| ||||||||| ||||||||
seq2  CACTTGT-TTCGTATGTGTGGGTACGAAGTGTCACAGCATA-GTGTGGAT  48

seq1  GCCAGACAACAACTTCTGGGAGTCAGTGCTCTCCTTCTACCATGGGGTTC  100
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCAGAC-ACAACTTCTGGAAGTCAGTGCTCTCCTTCTACCATGGGGTTC  97

seq1  TCTGTCCCTAGGGATGAAACTCCGGTCATCAGGTTAGGTGACAATCTCTG  150
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTAGGGATG-AACTCCGGTCATCAGGTTAGGTGACAATCTCTG  146

seq1  TTTCCATCCATGGTTATCAGC-AAAAGTTCTCTGTTTCCTTCATCTTTAC  199
      ||||||||||||| ||||||| ||||||||| ||||||||||||||||||
seq2  TTTCCATCCATGG-TATCAGCAAAAAGTTCT-TGTTTCCTTCATCTTTAC  194

seq1  CTCATGCCTTTGTTTCTGTCCCAGGGCCCCATCCAGGTCCCATATATGTC  249
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTCAAGCCTTTGTTTCTGTCCCAGAGCCCCATCCAGGTCCCATATATGTC  244

seq1  TGGTTGTCGTATTTCCTTAGGCTCCTCTTGACTGTGACCCTGTCTCAGAC  299
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGTTGTCGTATTTCCTTAGGCTCCTC-TGACTGTGACCCTGTCTCAGAC  293

seq1  TTTGGTTGCCTCCTTGAGGAATGTGGTGGCCCGTGGGGCGCTGTGTTGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGCCTCCTTGAGGAATGTGGTGGCCCGTGGGGCGCTGTGTTGGA  343

seq1  GCCTGCATATCGCTTGGGAATCTGCTATTTAGATTTAGATGGTTTTGTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCATATCGCTTGGGAATCTGCTATTTAGATTTAGATGGTTTTGTCA  393

seq1  TGATCAGTCTGGGGTGATGGATGTGGGAAGGGTGGCCAAGGG-AAAGGGG  448
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGATCAGTCTGGGGTGATGGATGTGGGAAGGGTGGCCAAGGGAAAAGGGG  443

seq1  CTCTGTGCTACTCTCCTATAGGCCAAGAACCCAAATCATTTGGAATTTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCTACTCTCCTATAGGCCAAGAACCCAAATCATTTGGAATTTTG  493

seq1  TGTGGATAGGGGAATTGCTTCTCTTTCACGTAGCGACTTATTAATCATTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATAGGGGAATTGCTTCTCTTTCACGTAGCGACTTATTAATCATTG  543

seq1  ATTTCTACTCGGGTTGATTCATATCTTTATACTTTATTGTGCAATTCCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACTCGGGTTGATTCATATCTTTATACTTTATTGTGCAATTCCAC  593

seq1  CTGGCTGCTTTCCTTACTCTCTTCTTTTGCTATTACTACCCTGGGTCCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGCTTTCCTTACTCTCTTCTTTTGCTATTACTACCCTGGGTCCTG  643

seq1  TAGATGCCACATCCCTGCAAGATCCTAATCTCTTCCCTGTTTGATCCATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCCACATCCCTGCAAGATCCTAATCTCTTCCCTGTTTGATCCATA  693

seq1  GGACATTCCAGGTTCAAACCTAGGGTCTGCCCATTCTATAGACAGCATCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTCCAGGTTCAAACCTAGGGTCTGCCCATTCTATAGACAGCATCA  743

seq1  GAAACCCAGATCTAGCCGGGCGGTGGTGGCGCACGCCTTTAATCCTAGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCAGATCTAGCCGGGCGGTGGTGGCGCACGCCTTTAATCCTAGCA  793

seq1  CTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCT  848
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTTT  843

seq1  ACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCG  893

seq1  AAAAAAACCAAACCAAACCAAACAAAGAAACCCAGATCTAGTGCTGGTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCAAACCAAACCAAACAAAGAAACCCAGATCTAGTGCTGGTTG  943

seq1  CTATTGGGGTTTGGTTGCTTCTAGACCCCCCTCAAATGGAGGAAGAGGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGGGTTTGGTTGCTTCTAGACCCCCCTCAAATGGAGGAAGAGGAA  993

seq1  GTGTGTGTGTGAATTC  1014
      ||||||||||||||||
seq2  GTGTGTGTGTGAATTC  1009