BAC Information

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BAC

Clone NameB6Ng01-080F19
Chromosome15 (Build37)
Map Location 8,576,824 - 8,765,579
singlet/doubletdoublet
Overlap geneSlc1a3
Upstream geneGdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633
Downstream geneEG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080F19.bB6Ng01-080F19.g
ACCDH895523DH895524
length9821,068
definitionDH895523|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F19, 5' end.DH895524|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,764,676 - 8,765,579)(8,576,824 - 8,577,901)
sequence
gaattcaaagcccatttctatgcttcctgctttgtagatcttctaacatg
taaatggaccgttacaaagaggattagctattagaatggtctgcgtgcag
tccatcgttcagctcccagttcattccttgccagagagtcccagctgagc
cgcatcttaatggcctcctttcatccttcagggggatgaactgcatacta
actccaagacctgtgttttccaacttcaatttgaccacaactttaacaaa
ctgtagactctcccccaactctccaatggtgcttaaaatatgaaacaaca
aaacaaaactactggtaataattgtgaggagctcttttctcccaatattg
cttttgatctttgtgttttatcacaagtagaaaatctaagacaatgaatg
gatagagagagggggaacttataggaacagaaatgattcagagacagctg
catcagcaaaagcccacaccatcatgggtgacagacaacttatgaaagct
ggagctcactgcatgaactgtgggcaactcaacagacaggaaactctttc
aggcatctcaggtagcctgagcctcttctgggaagttgtgctggtggtct
aagagcatctctcaacagccactataggttatatatgcttgggaaggtag
ggatctagtatatctggtcggtttcagagacttcctgaactactgaagtt
gcttatttcctgtgcttaatgagcttccctgaaggatggaatgtttcacc
cccttaaaacattggctctcaacctgtgggttgtgaccccctttgacaca
cctctaactccaaaaatatttacattacaattcttttgttttggtttttt
gagacagggtttctctgtgtagctctggctgtcctggaactcactctgta
gaccaggctggcctcgagctcagaaatctgcctacctctacctcccaagt
actgggattaaagcatgcgcacactgcccgtc
gaattctctactgccaggccttgattttttttttctataacactgacata
atatttgaaggcgagctgatgtaattttcccttttacttgtcagaatact
ctcagccaagccagccaaggctacttatttgcctgaaaaaattggaataa
ttacagtagagagaaattgacagtactcaggtttttggttctcacaatag
gatctcgtctcaaggcaagaggcttgagagcatatattacaaaggaatcc
catttgctaaattccctcatttcccttctttcttatcataagccagaccg
cagggttcttatgcaaaaggagaagtgggcaatgccaaacccagtcttgc
cagctgtgggcacggctggagaaagaaaggctgacataaggggagtcgct
gaagatacggtctaccccgacctcatttcctgattgccttttgcgccctg
accagcagagggcataactggcacatctgaacttttcttattcctgtgaa
atgcgaaggacaggttgagaaactggaagtctcatggggccctgtgtcga
taggtcagcgggagcagattgaagaatgtagaggggagaagagggggcgg
ggacaccaagagacacagggtgccaaccatcttaataggaagcggctgcg
ttacccgggagggattgcacaccggaggataagcagatgagttacatatc
gtcttagtcccactacaatcacatgccctgcactggggcataaggcgcaa
gaatttactttcccacaatgctactggctagagaaatgaagataaaggtt
ctgtggttaggtgaggaattcgtttctggatcgggagaacgctgtcctca
catggtggaaggctggagtattgggaacagaaaggctgcacggagccgcc
tttttttttttttttccagccactgttccatgaagagtcccatctcacat
cttaaaggcccactgctcactatcactgtgatgccatttgtaacttgaca
gacacattcgatctaaggaagatctcttacccttacatgctgggagcacc
cgggcacgccgagactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_8764676_8765579
seq2: B6Ng01-080F19.b_44_947 (reverse)

seq1  GGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTG  50

seq1  TCTCAAAAAACCAAAACAAAAGAATTGTAATGTAAATATTTTTGGAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAAACCAAAACAAAAGAATTGTAATGTAAATATTTTTGGAGTTA  100

seq1  GAGGTGTGTCAAAGGGGGTCACAACCCACAGGTTGAGAGCCAATGTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTGTCAAAGGGGGTCACAACCCACAGGTTGAGAGCCAATGTTTTA  150

seq1  AGGGGGTGAAACATTCCATCCTTCAGGGAAGCTCATTAAGCACAGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGAAACATTCCATCCTTCAGGGAAGCTCATTAAGCACAGGAAAT  200

seq1  AAGCAACTTCAGTAGTTCAGGAAGTCTCTGAAACCGACCAGATATACTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTTCAGTAGTTCAGGAAGTCTCTGAAACCGACCAGATATACTAG  250

seq1  ATCCCTACCTTCCCAAGCATATATAACCTATAGTGGCTGTTGAGAGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTACCTTCCCAAGCATATATAACCTATAGTGGCTGTTGAGAGATGC  300

seq1  TCTTAGACCACCAGCACAACTTCCCAGAAGAGGCTCAGGCTACCTGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGACCACCAGCACAACTTCCCAGAAGAGGCTCAGGCTACCTGAGAT  350

seq1  GCCTGAAAGAGTTTCCTGTCTGTTGAGTTGCCCACAGTTCATGCAGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAAGAGTTTCCTGTCTGTTGAGTTGCCCACAGTTCATGCAGTGAG  400

seq1  CTCCAGCTTTCATAAGTTGTCTGTCACCCATGATGGTGTGGGCTTTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTTTCATAAGTTGTCTGTCACCCATGATGGTGTGGGCTTTTGCT  450

seq1  GATGCAGCTGTCTCTGAATCATTTCTGTTCCTATAAGTTCCCCCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGCTGTCTCTGAATCATTTCTGTTCCTATAAGTTCCCCCTCTCTC  500

seq1  TATCCATTCATTGTCTTAGATTTTCTACTTGTGATAAAACACAAAGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATTCATTGTCTTAGATTTTCTACTTGTGATAAAACACAAAGATCA  550

seq1  AAAGCAATATTGGGAGAAAAGAGCTCCTCACAATTATTACCAGTAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATATTGGGAGAAAAGAGCTCCTCACAATTATTACCAGTAGTTTT  600

seq1  GTTTTGTTGTTTCATATTTTAAGCACCATTGGAGAGTTGGGGGAGAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTGTTTCATATTTTAAGCACCATTGGAGAGTTGGGGGAGAGTCT  650

seq1  ACAGTTTGTTAAAGTTGTGGTCAAATTGAAGTTGGAAAACACAGGTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTGTTAAAGTTGTGGTCAAATTGAAGTTGGAAAACACAGGTCTTG  700

seq1  GAGTTAGTATGCAGTTCATCCCCCTGAAGGATGAAAGGAGGCCATTAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGTATGCAGTTCATCCCCCTGAAGGATGAAAGGAGGCCATTAAGA  750

seq1  TGCGGCTCAGCTGGGACTCTCTGGCAAGGAATGAACTGGGAGCTGAACGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCTCAGCTGGGACTCTCTGGCAAGGAATGAACTGGGAGCTGAACGA  800

seq1  TGGACTGCACGCAGACCATTCTAATAGCTAATCCTCTTTGTAACGGTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGCACGCAGACCATTCTAATAGCTAATCCTCTTTGTAACGGTCCA  850

seq1  TTTACATGTTAGAAGATCTACAAAGCAGGAAGCATAGAAATGGGCTTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGTTAGAAGATCTACAAAGCAGGAAGCATAGAAATGGGCTTTGA  900

seq1  ATTC  904
      ||||
seq2  ATTC  904

seq1: chr15_8576824_8577901
seq2: B6Ng01-080F19.g_68_1135

seq1  GAATTCTCTACTGCCAGGCCTTGATTTTTTTTTTCTATAACACTGACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTGCCAGGCCTTGATTTTTTTTTTCTATAACACTGACATA  50

seq1  ATATTTGAAGGCGAGCTGATGTAATTTTCCCTTTTACTTGTCAGAATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAAGGCGAGCTGATGTAATTTTCCCTTTTACTTGTCAGAATACT  100

seq1  CTCAGCCAAGCCAGCCAAGGCTACTTATTTGCCTGAAAAAATTGGAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCAAGCCAGCCAAGGCTACTTATTTGCCTGAAAAAATTGGAATAA  150

seq1  TTACAGTAGAGAGAAATTGACAGTACTCAGGTTTTTGGTTCTCACAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTAGAGAGAAATTGACAGTACTCAGGTTTTTGGTTCTCACAATAG  200

seq1  GATCTCGTCTCAAGGCAAGAGGCTTGAGAGCATATATTACAAAGGAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCGTCTCAAGGCAAGAGGCTTGAGAGCATATATTACAAAGGAATCC  250

seq1  CATTTGCTAAATTCCCTCATTTCCCTTCTTTCTTATCATAAGCCAGACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTAAATTCCCTCATTTCCCTTCTTTCTTATCATAAGCCAGACCG  300

seq1  CAGGGTTCTTATGCAAAAGGAGAAGTGGGCAATGCCAAACCCAGTCTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCTTATGCAAAAGGAGAAGTGGGCAATGCCAAACCCAGTCTTGC  350

seq1  CAGCTGTGGGCACGGCTGGAGAAAGAAAGGCTGACATAAGGGGAGTCGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGGGCACGGCTGGAGAAAGAAAGGCTGACATAAGGGGAGTCGCT  400

seq1  GAAGATACGGTCTACCCCGACCTCATTTCCTGATTGCCTTTTGCGCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATACGGTCTACCCCGACCTCATTTCCTGATTGCCTTTTGCGCCCTG  450

seq1  ACCAGCAGAGGGCATAACTGGCACATCTGAACTTTTCTTATTCCTGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAGAGGGCATAACTGGCACATCTGAACTTTTCTTATTCCTGTGAA  500

seq1  ATGCGAAGGACAGGTTGAGAAACTGGAAGTCTCATGGGGCCCTGTGTCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAAGGACAGGTTGAGAAACTGGAAGTCTCATGGGGCCCTGTGTCGA  550

seq1  TAGGTCAGCGGGAGCAGATTGAAGAATGTAGAGGGGAGAAGAGGGGGCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAGCGGGAGCAGATTGAAGAATGTAGAGGGGAGAAGAGGGGGCGG  600

seq1  GGACACCAAGAGACACAGGGTGCCAACCATCTTAATAGGAAGCGGCTGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCAAGAGACACAGGGTGCCAACCATCTTAATAGGAAGCGGCTGCG  650

seq1  TTACCCGGGAGGGATTGCACACCGGAGGATAAGCAGATGAGTTACATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCGGGAGGGATTGCACACCGGAGGATAAGCAGATGAGTTACATATC  700

seq1  GTCTTAGTCCCACTACAATCACATGCCCTGCACTGGGGCATAAGGCGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGTCCCACTACAATCACATGCCCTGCACTGGGGCATAAGGCGCAA  750

seq1  GAATTTACTTTCCCACAATGCTACTGGCTAGAGAAATGAAGATAAAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTACTTTCCCACAATGCTACTGGCTAGAGAAATGAAGATAAAGGTT  800

seq1  CTGTGGTTAGGTGAGGAATTCGTTTTCTGGATCGGGAGAACGCTGTCCTC  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGTGGTTAGGTGAGGAATTCG-TTTCTGGATCGGGAGAACGCTGTCCTC  849

seq1  ACATGGTGGAAGGCTGGAGTATTGGGAACAG-AAGGCTGCACGGAGCCGC  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACATGGTGGAAGGCTGGAGTATTGGGAACAGAAAGGCTGCACGGAGCCGC  899

seq1  C-TTTTTTTTTTTTTTCCAGCCACTG-TCCATGAAGAAGTCCCATCTTCA  947
      | |||||||||||||||||||||||| ||||||||| ||||||||| |||
seq2  CTTTTTTTTTTTTTTTCCAGCCACTGTTCCATGAAG-AGTCCCATC-TCA  947

seq1  CATCTTAAAGGCCCACTGCTCACTATCACTGTGATGCCAATGTGTAAACT  997
      |||||||||||||||||||||||||||||||||||||| || |||||   
seq2  CATCTTAAAGGCCCACTGCTCACTATCACTGTGATGCC-ATTTGTAA--C  994

seq1  TTGACAGGAACACATTCGAATCTAAAGGAAAGATCTCTTAACCCTTACAT  1047
      |||||||  ||||||||| ||||||  | |||||||||| ||||||||| 
seq2  TTGACAG--ACACATTCG-ATCTAA--GGAAGATCTCTT-ACCCTTACA-  1037

seq1  TGCTGGAGGCAACCCGGCACGCCGAGACTAA  1078
      ||||||  ||| || ||||||||||||||||
seq2  TGCTGGGAGCACCCGGGCACGCCGAGACTAA  1068