BAC Information

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BAC

Clone NameB6Ng01-080G08
Chromosome15 (Build37)
Map Location 28,748,769 - 28,878,144
singlet/doubletdoublet
Overlap genenone
Upstream geneTrio, LOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080G08.bB6Ng01-080G08.g
ACCDH895549DH895550
length1,128739
definitionDH895549|Mus musculus domesticus DNA, BAC clone: B6Ng01-080G08, 5' end.DH895550|Mus musculus domesticus DNA, BAC clone: B6Ng01-080G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,748,769 - 28,749,899)(28,877,407 - 28,878,144)
sequence
gaattccttagggaaaatgtttcacaataacgaaacaaaacaccagacca
aggttagtacttcagttttaaattctcattacttatgacgacagaatgaa
caagtattatatggaacatctgttgtaagtatttctctactaggcttctg
tgcacacattttacatagattagggtttaaaccaaggcctcttcatgtat
atcatgtttgttctatatgtgttaaatctacatactgtaaattatcttaa
aataactggaaattgttatttatgtttttgttaaaaatcagaaacgttgt
tgggtttcttgtcacgcaccattaaccaaacacttgagagagaggcaggt
atatctctgtgaggtgagatcattctagtttatgtagcaagtactaagcc
aagatcctgtaaaactgaagtaaaacattaatttcactttcttatatatg
ctttatggcttataaatcattggttcacaatagaaactaaaaaaggaaca
tttgagagaaattattcatggcaagtagcctgataatttagacagccaac
agccaacctttgtgaatttataactcatttattatttgtgagaccacaat
cattgtatatctgagcaaatgagatttccagtgattgcctaacctgcact
gtgtacatagcacatgcattccttgaggggattaattatcatgtttcact
gacaatttgatacattacagagaaattaaatgtgtgaccatttgcctagt
ggaatttggaaagcttctatatactacaaagatacatgtcaaaattcaat
tttgcctataggaaatcaaattatctagcaatggaatgaatattttgatt
atttaacattccactctgtgcatataaccaccagatttctctgtgtgaag
gacaaagaatggctgaatgaggtcacagaatctatttaccctacacatat
attcacctccatcctggcattccaaccacagagtaaagatttgtcttcag
taaccatttattatctattatgaggaaatttaaagtgacaattatccaca
tagctaactgttgctcaaacaaagaaatcgtcatatgagcacaccatgga
caagagaaaataattaaactgaacttgc
gaattccattgcttgcagctctctggcgaaagctggaggcttatctcact
gtcatgtgccatgaccagtcagccctccatcttccacaaattttcattgc
taaacagcttctgaataattcatgctccagataacatttcagatttgact
caccagtcataaatacaattcccaaagaggagatgtattgagtcgctgga
gtttgtagacaaatatcttactcaggggaagagaggagaacagccagatt
ggcagatggagagattgagctgtgatgaaatttcaaggaagattttatct
gggtattgtggtggattttggagcagaacttcagcttctttcaaataggt
caagagagccatgtctttccatcctgtatcagtttattgtgtgaaacaga
ctccaagaatactgacatatacatgggaaaataacttcgttcgactgtgg
gaagttcttagagactgagatgtgggctgttggtagacaagacagacaaa
ataggaaaatgtggaatgaatactaacactaaaagcaaaataggattagt
attccccagccaagtagagtcctcaggtaatgaggggaatgctttgctta
atttgatattaagtattcaccttggctagcccacttagtttaggaatagt
ggtatttactctatttgtttcaaagctctcctgacaccatgacacacaga
catggaatacagttttctctctctctctcttttcttagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28748769_28749899
seq2: B6Ng01-080G08.b_44_1171

seq1  GAATTCCTTAGGGAAAATGTTTCACAATAACGAAACAAAACACCAGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGGGAAAATGTTTCACAATAACGAAACAAAACACCAGACCA  50

seq1  AGGTTAGTACTTCAGTTTTAAATTCTCATTACTTATGACGACAGAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGTACTTCAGTTTTAAATTCTCATTACTTATGACGACAGAATGAA  100

seq1  CAAGTATTATATGGAACATCTGTTGTAAGTATTTCTCTACTAGGCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTATATGGAACATCTGTTGTAAGTATTTCTCTACTAGGCTTCTG  150

seq1  TGCACACATTTTACATAGATTAGGGTTTAAACCAAGGCCTCTTCATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACATTTTACATAGATTAGGGTTTAAACCAAGGCCTCTTCATGTAT  200

seq1  ATCATGTTTGTTCTATATGTGTTAAATCTACATACTGTAAATTATCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTTGTTCTATATGTGTTAAATCTACATACTGTAAATTATCTTAA  250

seq1  AATAACTGGAAATTGTTATTTATGTTTTTGTTAAAAATCAGAAACGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGGAAATTGTTATTTATGTTTTTGTTAAAAATCAGAAACGTTGT  300

seq1  TGGGTTTCTTGTCACGCACCATTAACCAAACACTTGAGAGAGAGGCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCTTGTCACGCACCATTAACCAAACACTTGAGAGAGAGGCAGGT  350

seq1  ATATCTCTGTGAGGTGAGATCATTCTAGTTTATGTAGCAAGTACTAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTGTGAGGTGAGATCATTCTAGTTTATGTAGCAAGTACTAAGCC  400

seq1  AAGATCCTGTAAAACTGAAGTAAAACATTAATTTCACTTTCTTATATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCTGTAAAACTGAAGTAAAACATTAATTTCACTTTCTTATATATG  450

seq1  CTTTATGGCTTATAAATCATTGGTTCACAATAGAAACTAAAAAAGGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGGCTTATAAATCATTGGTTCACAATAGAAACTAAAAAAGGAACA  500

seq1  TTTGAGAGAAATTATTCATGGCAAGTAGCCTGATAATTTAGACAGCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGAAATTATTCATGGCAAGTAGCCTGATAATTTAGACAGCCAAC  550

seq1  AGCCAACCTTTGTGAATTTATAACTCATTTATTATTTGTGAGACCACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACCTTTGTGAATTTATAACTCATTTATTATTTGTGAGACCACAAT  600

seq1  CATTGTATATCTGAGCAAATGAGATTTCCAGTGATTGCCTAACCTGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATATCTGAGCAAATGAGATTTCCAGTGATTGCCTAACCTGCACT  650

seq1  GTGTACATAGCACATGCATTCCTTGAGGGGATTAATTATCATGTTTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACATAGCACATGCATTCCTTGAGGGGATTAATTATCATGTTTCACT  700

seq1  GACAATTTGATACATTACAGAGAAATTAAATGTGTGACCATTTGCCTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTGATACATTACAGAGAAATTAAATGTGTGACCATTTGCCTAGT  750

seq1  GGAATTTGGAAAGCTTCTATATACTACAAAGATACATGTCAAAATTCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTGGAAAGCTTCTATATACTACAAAGATACATGTCAAAATTCAAT  800

seq1  TTTGCCTATAGGAAATCAAATTATCTAGCAATGGAATGAATATTTTGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTATAGGAAATCAAATTATCTAGCAATGGAATGAATATTTTGATT  850

seq1  ATTTAACATTCCACTCTGTGCATATAACCACCAGATTTCTCTGTGTGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACATTCCACTCTGTGCATATAACCACCAGATTTCTCTGTGTGAAG  900

seq1  GACAAAGAATGGCTGAATGAGGTCACAGAATCTA-TTACCCTACACATAT  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACAAAGAATGGCTGAATGAGGTCACAGAATCTATTTACCCTACACATAT  950

seq1  ATTCACCTCCATCCTGGCATTCCAACCACAGAGTAAAGATTTGTCTTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTCACCTCCATCCTGGCATTCCAACCACAGAGTAAAGATTTGTCTTCA-  999

seq1  GTAACCATTTAATTATCTA-TATGAGGAAAATTTAAAGTGACAAATTAAT  1048
      |||||||||| |||||||| ||||||| |||||||||||||| |||||  
seq2  GTAACCATTT-ATTATCTATTATGAGG-AAATTTAAAGTGAC-AATTATC  1046

seq1  CACATAGCTAAACTGTTGCTCAAAACAAAAGAAATCG-CATATGAGCACA  1097
      ||||||||| ||||||||||||||   |||||||||| ||||||||||||
seq2  CACATAGCT-AACTGTTGCTCAAA--CAAAGAAATCGTCATATGAGCACA  1093

seq1  CCATGGACAA-AGAAAATAATTAAACTGAACTTGC  1131
      |||||||||| ||||||||||||||||||||||||
seq2  CCATGGACAAGAGAAAATAATTAAACTGAACTTGC  1128

seq1: chr15_28877407_28878144
seq2: B6Ng01-080G08.g_69_807 (reverse)

seq1  ACTAAGAAAAGAGAGAGAGAGAG-AAACTGTATTCCATGTCTGTGTGTCA  49
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTAAGAAAAGAGAGAGAGAGAGAAAACTGTATTCCATGTCTGTGTGTCA  50

seq1  TGGTGTCAGGAGAGCTTTGAAAC-AATAGAGTAAAATACCACTATTCCTA  98
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  TGGTGTCAGGAGAGCTTTGAAACAAATAGAGT-AAATACCACTATTCCTA  99

seq1  AACTAAGTGGGCTAGCCAAGGTGAATACTTAATATCAAATTAAGCAAAGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTGGGCTAGCCAAGGTGAATACTTAATATCAAATTAAGCAAAGC  149

seq1  ATTCCCCTCATTACCTGAGGACTCTACTTGGCTGGGGAATACTAATCCTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCTCATTACCTGAGGACTCTACTTGGCTGGGGAATACTAATCCTA  199

seq1  TTTTGCTTTTAGTGTTAGTATTCATTCCACATTTTCCTATTTTGTCTGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTTAGTGTTAGTATTCATTCCACATTTTCCTATTTTGTCTGTC  249

seq1  TTGTCTACCAACAGCCCACATCTCAGTCTCTAAGAACTTCCCACAGTCGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTACCAACAGCCCACATCTCAGTCTCTAAGAACTTCCCACAGTCGA  299

seq1  ACGAAGTTATTTTCCCATGTATATGTCAGTATTCTTGGAGTCTGTTTCAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGTTATTTTCCCATGTATATGTCAGTATTCTTGGAGTCTGTTTCAC  349

seq1  ACAATAAACTGATACAGGATGGAAAGACATGGCTCTCTTGACCTATTTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAACTGATACAGGATGGAAAGACATGGCTCTCTTGACCTATTTGA  399

seq1  AAGAAGCTGAAGTTCTGCTCCAAAATCCACCACAATACCCAGATAAAATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTGAAGTTCTGCTCCAAAATCCACCACAATACCCAGATAAAATC  449

seq1  TTCCTTGAAATTTCATCACAGCTCAATCTCTCCATCTGCCAATCTGGCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGAAATTTCATCACAGCTCAATCTCTCCATCTGCCAATCTGGCTG  499

seq1  TTCTCCTCTCTTCCCCTGAGTAAGATATTTGTCTACAAACTCCAGCGACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTCTTCCCCTGAGTAAGATATTTGTCTACAAACTCCAGCGACT  549

seq1  CAATACATCTCCTCTTTGGGAATTGTATTTATGACTGGTGAGTCAAATCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATCTCCTCTTTGGGAATTGTATTTATGACTGGTGAGTCAAATCT  599

seq1  GAAATGTTATCTGGAGCATGAATTATTCAGAAGCTGTTTAGCAATGAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTATCTGGAGCATGAATTATTCAGAAGCTGTTTAGCAATGAAAA  649

seq1  TTTGTGGAAGATGGAGGGCTGACTGGTCATGGCACATGACAGTGAGATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGAAGATGGAGGGCTGACTGGTCATGGCACATGACAGTGAGATAA  699

seq1  GCCTCCAGCTTTCGCCAGAGAGCTGCCTGCAATGGAATTC  738
      ||||||||||||||||||||||||||  ||||||||||||
seq2  GCCTCCAGCTTTCGCCAGAGAGCTGCAAGCAATGGAATTC  739