BAC Information

Click to search

BAC

Clone NameB6Ng01-080P02
Chromosome15 (Build37)12 (Build37)
Map Location 5,220,521 - 5,221,04744,574,518 - 44,575,564
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4
Downstream geneLOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080P02.bB6Ng01-080P02.g
ACCDH895940DH895941
length1,0521,047
definitionDH895940|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P02, 5' end.DH895941|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,220,521 - 5,221,047)(44,574,518 - 44,575,564)
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctctcccgttttttc
ttggaggtactcagagctatgagtttccctcttagaaatgctttcattgt
gtcccaaaggtttggggtacgttgtggcttcattttcataaactctaaaa
gt
gaattcatataggaggtaaattgaattaaaataagattaataaataactt
attacaaaagatggtgttactgatacatgtctgcctttgcaagttggcaa
caaagtttgtcatcaaaaaagtcattgaaaacctgatttacagatgagag
tattattttaactaatttttttagatatgtatgtgtaggaagcatataag
tagatttcttctgtcaaaaaatgatatttttcctcagcaagggttgacat
gtccacctatttgatgacccccatttctagacaattaagatatacagagg
aggtaaacaaaatgaaatcaagtcattgagttaaaatgtgtttcagtgaa
ggacaggaacaaagcaaggttaagactgtaaagaagctgagtatgctgag
agctggagaattaaataatcccaaccagtttaattttgttttaaacaaca
catttttctaagagtaaatacaacttgttaagaaatagttaataatgctt
ttataataaaagataataaaaaaatgaaagtttattacaaagcctccttt
tacctagtagctgaaatgtgagagacagatcatagtatttagcaactcgt
acgttatttcttagtatcattatcaggtcatttaactgtgttatgtgtaa
cagaaaaataatttgttgttgtttattcatatgattgttgtttgattttt
gggttttgaggttaaaagttactgtagtaacctaaaatgactgggcctaa
gaagaaaagagaccaacctgacacaaataccaggcgttctgccaaagaat
gacagacttaagagtagaaatgaagtcatcattttctcagctaaagatga
tttttttctagcattactcctgtgtggaagcaccctgatagctccgaagc
cagtttaaattggacgtaattaggctttctgtgattcagtgaacctaagt
aaaggcactgtttagaaaattattaaaagttggattacatttcttaaagt
ccctggccagatcaccagatcatcagagttatgggtgttttctaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_5220521_5221047
seq2: B6Ng01-080P02.b_46_572 (reverse)

seq1  CCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATA  50

seq1  GTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTC  100

seq1  TATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCA  150

seq1  CAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTA  200

seq1  TTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTC  250

seq1  AGACCAATTTCTCTTATGAACATCGATGCAAAAATTCTTAATAAAATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAATTTCTCTTATGAACATCGATGCAAAAATTCTTAATAAAATTCT  300

seq1  CGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAG  350

seq1  TAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATC  400

seq1  AATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCAT  450

seq1  CTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA  500

seq1  TAAAAGTTCTGGAAAGATCAGGAATTC  527
      |||||||||||||||||||||||||||
seq2  TAAAAGTTCTGGAAAGATCAGGAATTC  527

seq1: chr12_44574518_44575564
seq2: B6Ng01-080P02.g_67_1113 (reverse)

seq1  ATTTAGAAAACACCCAT-ACTCTTGATGATCTGGTGATCTGGCCAGGGAC  49
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  ATTTAGAAAACACCCATAACTC-TGATGATCTGGTGATCTGGCCAGGGAC  49

seq1  TTTAAGAAATGTAATCCAAACTTTTAATTATTTTCTAAACAGTGCCTTTA  99
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  TTTAAGAAATGTAATCC-AACTTTTAATAATTTTCTAAACAGTGCCTTTA  98

seq1  CTTAGGTTCACTGAATCACAGAAAGCCTAATTACGTCCAATTT-AACTGG  148
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTAGGTTCACTGAATCACAGAAAGCCTAATTACGTCCAATTTAAACTGG  148

seq1  CTTCGGAGCTATCAGGGTGCTTCCACACAGGAGTAATGCTAGAAAAAAAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGAGCTATCAGGGTGCTTCCACACAGGAGTAATGCTAGAAAAAAAT  198

seq1  CATCTTTAGCTGAGAAAATGATGACTTCATTTCTACTCTTAAGTCTGTCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTAGCTGAGAAAATGATGACTTCATTTCTACTCTTAAGTCTGTCA  248

seq1  TTCTTTGGCAGAACGCCTGGTATTTGTGTCAGGTTGGTCTCTTTTCTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGCAGAACGCCTGGTATTTGTGTCAGGTTGGTCTCTTTTCTTCT  298

seq1  TAGGCCCAGTCATTTTAGGTTACTACAGTAACTTTTAACCTCAAAACCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCAGTCATTTTAGGTTACTACAGTAACTTTTAACCTCAAAACCCA  348

seq1  AAAATCAAACAACAATCATATGAATAAACAACAACAAATTATTTTTCTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAACAACAATCATATGAATAAACAACAACAAATTATTTTTCTGT  398

seq1  TACACATAACACAGTTAAATGACCTGATAATGATACTAAGAAATAACGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATAACACAGTTAAATGACCTGATAATGATACTAAGAAATAACGTA  448

seq1  CGAGTTGCTAAATACTATGATCTGTCTCTCACATTTCAGCTACTAGGTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTGCTAAATACTATGATCTGTCTCTCACATTTCAGCTACTAGGTAA  498

seq1  AAGGAGGCTTTGTAATAAACTTTCATTTTTTTATTATCTTTTATTATAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGCTTTGTAATAAACTTTCATTTTTTTATTATCTTTTATTATAAA  548

seq1  AGCATTATTAACTATTTCTTAACAAGTTGTATTTACTCTTAGAAAAATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATTAACTATTTCTTAACAAGTTGTATTTACTCTTAGAAAAATGT  598

seq1  GTTGTTTAAAACAAAATTAAACTGGTTGGGATTATTTAATTCTCCAGCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTAAAACAAAATTAAACTGGTTGGGATTATTTAATTCTCCAGCTC  648

seq1  TCAGCATACTCAGCTTCTTTACAGTCTTAACCTTGCTTTGTTCCTGTCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATACTCAGCTTCTTTACAGTCTTAACCTTGCTTTGTTCCTGTCCT  698

seq1  TCACTGAAACACATTTTAACTCAATGACTTGATTTCATTTTGTTTACCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAACACATTTTAACTCAATGACTTGATTTCATTTTGTTTACCTC  748

seq1  CTCTGTATATCTTAATTGTCTAGAAATGGGGGTCATCAAATAGGTGGACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATATCTTAATTGTCTAGAAATGGGGGTCATCAAATAGGTGGACA  798

seq1  TGTCAACCCTTGCTGAGGAAAAATATCATTTTTTGACAGAAGAAATCTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACCCTTGCTGAGGAAAAATATCATTTTTTGACAGAAGAAATCTAC  848

seq1  TTATATGCTTCCTACACATACATATCTAAAAAAATTAGTTAAAATAATAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCTTCCTACACATACATATCTAAAAAAATTAGTTAAAATAATAC  898

seq1  TCTCATCTGTAAATCAGGTTTTCAATGACTTTTTTGATGACAAACTTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTGTAAATCAGGTTTTCAATGACTTTTTTGATGACAAACTTTGT  948

seq1  TGCCAACTTGCAAAGGCAGACATGTATCAGTAACACCATCTTTTGTAATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACTTGCAAAGGCAGACATGTATCAGTAACACCATCTTTTGTAATA  998

seq1  AGTTATTTATTAATCTTATTTTAATTCAATTTACCTCCTATATGAATTC  1047
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTATTAATCTTATTTTAATTCAATTTACCTCCTATATGAATTC  1047