BAC Information

Click to search

BAC

Clone NameB6Ng01-081H18
Chromosome6 (Build37)15 (Build37)
Map Location 41,061,552 - 41,062,68489,175,041 - 89,175,339
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790
Downstream geneTcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081H18.bB6Ng01-081H18.g
ACCDH896324DH896325
length1,127609
definitionDH896324|Mus musculus domesticus DNA, BAC clone: B6Ng01-081H18, 5' end.DH896325|Mus musculus domesticus DNA, BAC clone: B6Ng01-081H18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,061,552 - 41,062,684)(89,175,041 - 89,175,339)
sequence
gaattccatctgtgttttcatatttattgtcccatgatattgtacaatgt
ttatgtactgtagaaccatcaccatcacggctttcccaagaagttttcat
ctttaaactctaaataggaactattcttccctcagagccttcatcttgtc
tattttaggaagtgtatgttagaattgaagttttttctctttgtgcctga
tttctttcactttgcatatgtcttatatgtgtaatatgtaagaactagac
ttatgtcaatacctcattgtaataaagctgcacacttttctacctcacat
tcactttatggacttttaagttctgactatatctatgttttatatctatc
ttttcaaagcctacaaagagcaataaaattgctaaaaatttctctgactt
ttgtttctcagtgacacaaggcacattgcttaacaaatctatgaatgtat
taataaggaaaccatggtatcttacttcctcaaacataaaatgtacagtt
ttacatctcaaaaaagattacaactttgcaaagaaggaagtaaataggac
tcatcactaggagaaaaattaatcactagaaacaaacttgtttctgacaa
gtcagctactatgacatttaactgtgtaactgtagcacatacctcaacct
gtctgtaaaaatgagggagacatgcaaagatccaactcatgcttccagag
tagaaactgcagagtctgtgatgagcaataactcactgtaagtaacagta
gactggatgacccagaaggatgaattaatgaatttgaaaatgatgctgaa
aggaaaacacagaggaaatgagaataagatataagtgaggtgaagataca
ctggtggtgaaatatgcactcagtggggctggagagatggctcagtggtt
aagggcactgactgctcttcagaatggtcctgagttcaaatcccagcaat
cacatggtggctcacaccatccatcaaaaggtctgactccctcttctgga
gtttctgaagacagctacagttgtacttacatataataaataaatacatt
taaaaagatgtttaattaaaaatacatcaggattgcaacataaattttat
atttagtttcctcaaaggctatccagc
gaattctccatttgagtgtttacaatgctggtagaagactggacaaaaac
agttttcctttccagagaaaggggatacagtgtgccgtaggtcattagaa
ggaagaagctgcttgactcacagaaacatggttttgctcacttcaagctc
aggagagaatctgagtgccagaactgcatccataataaaatgacatttgc
atgactttcaacatttacaaatgtggctagagtagggttctcttcaggaa
gacaattactatgtcatccccagatatagctgtctcttgtgaggctttgc
cggggcctagcaaacacagaagtggaagctcacagtcagctattggatgg
aacacagggcccccaatggaggagctagagaaagtatccaaggagctaac
ggggtctgcaaccctataggtggaacaacaatatgaactaaccagtaccc
gcccccccccccagctcatgtttctagctgcatatgtatcagaagatggc
ctagtcggccatcattggaaagagaggcccatcggtcttgcaaactttat
atgcctcagtacaggggaacgccagggccaagaagtgggagtgggggggg
ttatggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_41061552_41062684
seq2: B6Ng01-081H18.b_43_1169

seq1  GAATTCCATCTGTGTTTTCATATTTATTGTCCCATGATATTGTACAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTGTGTTTTCATATTTATTGTCCCATGATATTGTACAATGT  50

seq1  TTATGTACTGTAGAACCATCACCATCACGGCTTTCCCAAGAAGTTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACTGTAGAACCATCACCATCACGGCTTTCCCAAGAAGTTTTCAT  100

seq1  CTTTAAACTCTAAATAGGAACTATTCTTCCCTCAGAGCCTTCATCTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACTCTAAATAGGAACTATTCTTCCCTCAGAGCCTTCATCTTGTC  150

seq1  TATTTTAGGAAGTGTATGTTAGAATTGAAGTTTTTTCTCTTTGTGCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGGAAGTGTATGTTAGAATTGAAGTTTTTTCTCTTTGTGCCTGA  200

seq1  TTTCTTTCACTTTGCATATGTCTTATATGTGTAATATGTAAGAACTAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCACTTTGCATATGTCTTATATGTGTAATATGTAAGAACTAGAC  250

seq1  TTATGTCAATACCTCATTGTAATAAAGCTGCACACTTTTCTACCTCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCAATACCTCATTGTAATAAAGCTGCACACTTTTCTACCTCACAT  300

seq1  TCACTTTATGGACTTTTAAGTTCTGACTATATCTATGTTTTATATCTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTATGGACTTTTAAGTTCTGACTATATCTATGTTTTATATCTATC  350

seq1  TTTTCAAAGCCTACAAAGAGCAATAAAATTGCTAAAAATTTCTCTGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGCCTACAAAGAGCAATAAAATTGCTAAAAATTTCTCTGACTT  400

seq1  TTGTTTCTCAGTGACACAAGGCACATTGCTTAACAAATCTATGAATGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTCAGTGACACAAGGCACATTGCTTAACAAATCTATGAATGTAT  450

seq1  TAATAAGGAAACCATGGTATCTTACTTCCTCAAACATAAAATGTACAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGAAACCATGGTATCTTACTTCCTCAAACATAAAATGTACAGTT  500

seq1  TTACATCTCAAAAAAGATTACAACTTTGCAAAGAAGGAAGTAAATAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTCAAAAAAGATTACAACTTTGCAAAGAAGGAAGTAAATAGGAC  550

seq1  TCATCACTAGGAGAAAAATTAATCACTAGAAACAAACTTGTTTCTGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTAGGAGAAAAATTAATCACTAGAAACAAACTTGTTTCTGACAA  600

seq1  GTCAGCTACTATGACATTTAACTGTGTAACTGTAGCACATACCTCAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTACTATGACATTTAACTGTGTAACTGTAGCACATACCTCAACCT  650

seq1  GTCTGTAAAAATGAGGGAGACATGCAAAGATCCAACTCATGCTTCCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAAAAATGAGGGAGACATGCAAAGATCCAACTCATGCTTCCAGAG  700

seq1  TAGAAACTGCAGAGTCTGTGATGAGCAATAACTCACTGTAAGTAACAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTGCAGAGTCTGTGATGAGCAATAACTCACTGTAAGTAACAGTA  750

seq1  GACTGGATGACCCAGAAGGATGAATTAATGAATTTGAAAATGATGCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGATGACCCAGAAGGATGAATTAATGAATTTGAAAATGATGCTGAA  800

seq1  AGGAAAACACAGAGGAAATGAGAATAAGATATAAGTGAGGTGAAGATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACACAGAGGAAATGAGAATAAGATATAAGTGAGGTGAAGATACA  850

seq1  CTGGTGGTGAAATATGCACTCAGTGGGGCTGGAGAGATGGCTCAGTGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGTGAAATATGCACTCAGTGGGGCTGGAGAGATGGCTCAGTGGTT  900

seq1  AAGGGCACTGACTGCTCTTCAGAATGGTCCTGAGTTCAAATCCCAGCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCACTGACTGCTCTTCAGAATGGTCCTGAGTTCAAATCCCAGCAAT  950

seq1  CACATGGTGGCTCACAACCATCCATCAAAAGGTCTGACTCCCTCTTCTGG  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACATGGTGGCTCAC-ACCATCCATCAAAAGGTCTGACTCCCTCTTCTGG  999

seq1  AGTGTCTGAAGACAGCTACAG-TGTACTTACATATAATAAATAAATACAT  1049
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTTTCTGAAGACAGCTACAGTTGTACTTACATATAATAAATAAATACAT  1049

seq1  TTAAAAAAGAATGTTTATTTAAAAATACAATCAGGAATTGCAACATAAAT  1099
      |||||||   ||||||| |||||||||| |||||| ||||||||||||||
seq2  TTAAAAA--GATGTTTAATTAAAAATAC-ATCAGG-ATTGCAACATAAAT  1095

seq1  TTTAATATTTAAGTTTCCTCAAAGGCTATCCAGC  1133
      ||| |||||| |||||||||||||||||||||||
seq2  TTT-ATATTT-AGTTTCCTCAAAGGCTATCCAGC  1127

seq1: chr15_89175041_89175339
seq2: B6Ng01-081H18.g_370_677 (reverse)

seq1  CCCCCATACACTCCCCCCCCCCCACTTTTTGGCCCTGGCGTTCCCCTGTA  50
      ||||||||  | ||||| | ||||||| ||||||||||||||||||||||
seq2  CCCCCATAACCCCCCCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTA  50

seq1  CTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATG  100
      ||| ||||||||||||||||||| || ||||||||||||||||| |||||
seq2  CTGAGGCATATAAAGTTTGCAAGACCGATGGGCCTCTCTTTCCAATGATG  100

seq1  GGCGACTAGGCCATCTTTTGGTACATATGCAGCTAGAGTCAAGAGCTCCG  150
      | ||||||||||||||| || ||||||||||||||||  || |||||  |
seq2  GCCGACTAGGCCATCTTCTGATACATATGCAGCTAGAAACATGAGCTGGG  150

seq1  ---------GGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTT  191
               |||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGCGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTT  200

seq1  GCAGATCTCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGG  241
      ||||| | | ||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCCCGTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGG  250

seq1  CCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGC  291
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  CCCTGTGTTCCATCCAATAGCTGACTGTGAGCTTCCACTTCTGTGTTTGC  300

seq1  TAGGCCCC  299
      ||||||||
seq2  TAGGCCCC  308