BAC Information

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BAC

Clone NameB6Ng01-081I09
Chromosome15 (Build37)
Map Location 78,849,413 - 79,031,564
singlet/doubletdoublet
Overlap geneH1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655
Upstream geneCacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp
Downstream genePick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081I09.bB6Ng01-081I09.g
ACCDH896352DH896353
length963656
definitionDH896352|Mus musculus domesticus DNA, BAC clone: B6Ng01-081I09, 5' end.DH896353|Mus musculus domesticus DNA, BAC clone: B6Ng01-081I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,030,585 - 79,031,564)(78,849,413 - 78,850,068)
sequence
gaattccacagtgtactccaggaaccagctttctgcggtcccccctctcc
ccccaccagcattgagcatagttatgcccccagggagctaacagtcctat
gaggcagacagacaagcaaatgataacaagagtcccactgggagaggccc
cagatatggactcaaagcaagcaccacaaatccaggggagccaatataga
gagagtctttcccaaagaagggttcaggccttgagaagcatcccattgtg
gcccccgacagccgctcttatgaccagcacctcagatgccgattctatgg
aatccatagaccacctttgattctagcctgtggaggatagaccagccagg
ctgcaccctggaggtctcattcatcagatgggtgaagtgagttttctatg
ggtaaaactacccagatggcacacactgcccccaaagggggttcagttct
gtgagccgagcagattcttggtgtgccttggggtggggagacacaagaag
ggagcagaagacactggatgaccccgtctgtcgctgaggcctgtggtaac
tgttaggtgcagaggctggacatacacccaagaaaaaacactcagacaca
taaaattaatacatctagagatgtttgaaagagtctacagatgagaggct
ggtgagacgactctcagcggataaaggctcctgcctccaagtctgataac
ttaaagatccacatggtggactgagagaagagacccctaaattgtcccct
gatttacacacacacatgtgtgctctctcactcgctcgctctctctgtaa
ataaataaacaaacaataattaatagatgtaagttattgatttaattata
attattttgcctcagtctctcttgagtctggcagctgaaactcttcgtga
tatgaggttggccccaactcccagagatcacctctgcctccaagtgcaag
attaaaggtagga
gaattcatgaccctcctgccccaggcttcccttgtggtcatttattgaac
aaaattctgctgagcatccctgaattaaatagttaaaagaccaccatctc
cctcttgaggtctcttacagaatagccgggaatcctgctaggtccaaagg
aagcaggcctctggtgggcctcatggcctccccacttcccacttcctgtg
ctcaccctgggctcctggaaatgggaatgaatgcagtttgtgggttcact
gtggccactagcctaaggcacatgcgtcatcgcatgccccatgcctggcc
tccagatctaagtgtatataggtcaccagcggcccacaccttgcccacat
cgtgaggcatctcctttgaagtctaagtgtcctctctgccggctgacctg
ggacaggactatcctgatgagtcagatgacagccaatcccatggaacctc
acaggacaagggaggaacctggaactctttcctaccggggctctccaatc
atctacaaatttgacccctttgtccccggttatgggagaagcagttttga
gagtgggtgaagcatgggagtcagactgtttaactcagtccccatctggc
catacactcgatcatagacaaagtctgatggtgctgggacttggtaactg
ctcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_79030585_79031564
seq2: B6Ng01-081I09.b_37_999 (reverse)

seq1  TCCTACCTTTAATCTTTGCACTTGGGAGGCAGAGGTAGATCTCTGTGAGT  50
      |||||||||||||| |||||||| |||||||||||| |||||||| ||| 
seq2  TCCTACCTTTAATC-TTGCACTT-GGAGGCAGAGGT-GATCTCTGGGAG-  46

seq1  TTGAGGCCAACCTCGTCTACACAAAGAGTTTCAGGCTGGCCAAGACTTCA  100
      ||| |||||||||| | | ||| |||||||||| ||||  | |||| |||
seq2  TTGGGGCCAACCTCATAT-CACGAAGAGTTTCA-GCTG--CCAGAC-TCA  91

seq1  TAGAGAGACCCTGAGGCCAAAATAAATTAATAATTAAAATCAATAAATTA  150
       |||||||  |||||| ||||||||  | |||||| |||||||||| |||
seq2  -AGAGAGA--CTGAGG-CAAAATAA--TTATAATT-AAATCAATAACTTA  134

seq1  CATCTATTTATTTATTTGTTTGTTTATTTATTTACAGAGAGAGCGAGCGA  200
      |||||||| |||   |||||||||||||||||||||||||||||||||||
seq2  CATCTATTAATT--ATTGTTTGTTTATTTATTTACAGAGAGAGCGAGCGA  182

seq1  GTGAGAGAGCACACATGTGTGTGTGTAAATCAGGGGACAATTTAGGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAGCACACATGTGTGTGTGTAAATCAGGGGACAATTTAGGGGTC  232

seq1  TCTTCTCTCCGTCCACCATGTGGATCTTTAAGTTATCAGACTTGGAGGCA  300
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCAGTCCACCATGTGGATCTTTAAGTTATCAGACTTGGAGGCA  282

seq1  GGAGCCTTTATCCGCTGAGAGTCGTCTCACCAGCCTCTCATCCGTAGACT  350
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAGCCTTTATCCGCTGAGAGTCGTCTCACCAGCCTCTCATCTGTAGACT  332

seq1  CTTTCAAACATTTCTAGATGTATTTATTTTATGTGTCTGAGTG-TTTTTC  399
      ||||||||||| |||||||||||| |||||||||||||||||| ||||||
seq2  CTTTCAAACATCTCTAGATGTATTAATTTTATGTGTCTGAGTGTTTTTTC  382

seq1  TTGGGTGTATGTCCAGCCTCTGCACCTAACAGTTACCACAGGCCTCAGCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGTATGTCCAGCCTCTGCACCTAACAGTTACCACAGGCCTCAGCG  432

seq1  ACAGACGGGGTCATCCAGTGTCTTCTGCTCCCTTCTTGTGTCTCCCCACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACGGGGTCATCCAGTGTCTTCTGCTCCCTTCTTGTGTCTCCCCACC  482

seq1  CCAAGGCACACCACGAATCTGCTCGGCTCACAGAACTGAACCCCCTTTGG  549
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCACACCAAGAATCTGCTCGGCTCACAGAACTGAACCCCCTTTGG  532

seq1  GGGCAGTGTGTGCCATCTGGGTAGTTTTACCCATAGAAAACTCACTTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGTGTGCCATCTGGGTAGTTTTACCCATAGAAAACTCACTTCAC  582

seq1  CCATCTGATGAATGAGACCTCCAGGGTGCAGCCTGGCTGGTCTATCCTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGATGAATGAGACCTCCAGGGTGCAGCCTGGCTGGTCTATCCTCC  632

seq1  ACAGGCTAGAATCAAAGGTGGTCTATGGATTCCATAGAATCGGCATCTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTAGAATCAAAGGTGGTCTATGGATTCCATAGAATCGGCATCTGA  682

seq1  GGTGCTGGTCATAAGAGCGGCTGTCGGGGGCCACAATGGGATGCTTCTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGTCATAAGAGCGGCTGTCGGGGGCCACAATGGGATGCTTCTCA  732

seq1  AGGCCTGAACCCTTCTTTGGGAAAGACTCTCTCTATATTGGCTCCCCTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGAACCCTTCTTTGGGAAAGACTCTCTCTATATTGGCTCCCCTGG  782

seq1  ATTTGTGGTGCTTGCTTTGAGTCCATATCTGGGGCCTCTCCCAGTGGGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGGTGCTTGCTTTGAGTCCATATCTGGGGCCTCTCCCAGTGGGAC  832

seq1  TCTTGTTATCATTTGCTTGTCTGTCTGCCTCATAGGACTGTTAGCTCCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTATCATTTGCTTGTCTGTCTGCCTCATAGGACTGTTAGCTCCCT  882

seq1  GGGGGCATAACTATGCTCAATGCTGGTGGGGGGAGAGGGGGGACCGCAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCATAACTATGCTCAATGCTGGTGGGGGGAGAGGGGGGACCGCAGA  932

seq1  GAGCTGGTTCCTGGAGTACACTGTGGAATTC  980
       ||||||||||||||||||||||||||||||
seq2  AAGCTGGTTCCTGGAGTACACTGTGGAATTC  963

seq1: chr15_78849413_78850068
seq2: B6Ng01-081I09.g_68_723

seq1  GAATTCATGACCCTCCTGCCCCAGGCTTCCCTTGTGGTCATTTATTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACCCTCCTGCCCCAGGCTTCCCTTGTGGTCATTTATTGAAC  50

seq1  AAAATTCTGCTGAGCATCCCTGAATTAAATAGTTAAAAGACCACCATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTGCTGAGCATCCCTGAATTAAATAGTTAAAAGACCACCATCTC  100

seq1  CCTCTTGAGGTCTCTTACAGAATAGCCGGGAATCCTGCTAGGTCCAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGAGGTCTCTTACAGAATAGCCGGGAATCCTGCTAGGTCCAAAGG  150

seq1  AGGCAGGCCTCTGGTGGGCCTCATGGCCTCCCCACTTCCCACTTCCTGTG  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCCTCTGGTGGGCCTCATGGCCTCCCCACTTCCCACTTCCTGTG  200

seq1  CTCACCCTGGGCTCCTGGAAATGGGAATGAATGCAGTTTGTGGGTTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCTGGGCTCCTGGAAATGGGAATGAATGCAGTTTGTGGGTTCACT  250

seq1  GTGGCCACTAGCCTAAGGCACATGCGTCATCGCATGCCCCATGCCTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACTAGCCTAAGGCACATGCGTCATCGCATGCCCCATGCCTGGCC  300

seq1  TCCAGATCTAAGTGTATATAGGTCACCAGCGGCCCACACCTTGCCCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATCTAAGTGTATATAGGTCACCAGCGGCCCACACCTTGCCCACAT  350

seq1  CGTGAGGCATCTCCTTTGAAGTCTAAGTGTCCTCTCTGCCGGCTGACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGGCATCTCCTTTGAAGTCTAAGTGTCCTCTCTGCCGGCTGACCTG  400

seq1  GGACAGGACTATCCTGATGAGTCAGATGACAGCCAATCCCATGGAACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGACTATCCTGATGAGTCAGATGACAGCCAATCCCATGGAACCTC  450

seq1  ACAGGACAAGGGAGGAACCTGGAACTCTTTCCTACCGGGGCTCTCCAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACAGGACAAGGGAGGAACCTGGAACTCTTTCCTACCGGGGCTCTCCAATC  500

seq1  ATCTACAAATTTGACCCCTTTGTCCCCGGTTATGGGAGAAGCAGTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAAATTTGACCCCTTTGTCCCCGGTTATGGGAGAAGCAGTTTTGA  550

seq1  GAGTGGGTGAAGCATGGGAGTCAGACTGTTTAACTCAGTCCCCATCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGTGAAGCATGGGAGTCAGACTGTTTAACTCAGTCCCCATCTGGC  600

seq1  CATAGACTCGATCATAGCCAAGGTCTGAGGGTGCTGGGACTTGGTAACTG  650
      |||| |||||||||||| ||| |||||| |||||||||||||||||||||
seq2  CATACACTCGATCATAGACAAAGTCTGATGGTGCTGGGACTTGGTAACTG  650

seq1  CTCAAT  656
      ||||||
seq2  CTCAAT  656