BAC Information

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BAC

Clone NameB6Ng01-082J24
Chromosome15 (Build37)
Map Location 23,366,007 - 23,367,223
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545091, Cdh18
Downstream geneLOC624863, LOC666989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082J24.bB6Ng01-082J24.g
ACCDH897128DH897129
length1,0231,190
definitionDH897128|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J24, 5' end.DH897129|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcattctgctctgcctgggtctcccatcattttcctctaggtg
ttgagtcagaatgtgtggcttctgaagtctgtcctataaatgtccctgtg
tctgttttcttttctctctccattatggaagagtgtttacacatacacac
acacacacacacacacacacacacacacacacacacacattatctaagga
tggaatgaggaatattttacagaggtttccatggaattatactgctgatt
tcacgtgtcccaaatagcagtattacaaatatcctacctatcaagccata
tctatacattgtcatgctcaacatgcatggtggatatttttacttattta
ttttaaatttattattattttacttactcactttacatcctagtacctat
tctaccaccagtcacctcgcactcacagtcctccccctctccatctcccc
ttctcctctgagctggtaggtgccctcttgaatattcccaaactctggca
gttcaagtctttgtaaggctaagtgttcctcttacactgatgccagacaa
ggcatctcagctagaagaacatatcccatgtacagacagcagcttttggg
aaagcccccactacagttctttagaacccatatggagacaaagctgcata
tctgctacatttgtccaggtaagcctaggtctagcctatgtatgttcttt
gtgttgtggttcagaatttgggagccctaagggtccagggttgttgactc
cgtttgtcttcctgtggaattcctatcccctttgcaacccaaaatctctc
ctcctattcttcctcagaagactgccttgtctggcctcagtaggctagga
tgcacttaacacagaagaaacttgatgcctcagggaagagtgatgctggt
gtgggggcagtgggggagggtgggcaagtgggtggaagatacctctcaga
atccggagatgtagatagctaaagaacttggggatgggggataatagagg
ggggccacttttggaatgtaata

gaattctccattgtgatgtaaattgaggcagcaagtaattctatgagact
caatcgatttctatgccttgcctgagaacaagaatgctattgttctgaca
ctcttctggtctctaagaaaacccaaggacgtcatgcatttgtttgtgtg
agtcacagcaaccaaggaaatccctgcacctcgctttgggtgtgagttat
tttgtcatagtgcttgtaagattgtaggatggatgctcacttccactggt
ttgcttgcctcggcgactccagctatccttcacctgtatctcttttaatg
gaggccaacgtttattgagcctctgtctctgtctgtcttttacttactct
cctcatcctatatagcatagaggttttttacagtgtaaacacaccatctc
ctctctctctgtgtctctctgtctctgtctctgtctctctctctcacaca
cacacaaacacacacacacacaagtatacaagcacctttcataaccagta
tctcatcatatgtgtcacttctttagagtcccaaaatgatatgatctgta
ctctcttcccagataagatctctaagcttcctcagaccatgagaagacag
tgtttgcttctcactgaatgtaggactgtacctagaccattcaagacaat
tttattggcatgatgaatgaatcatacctaaatgagctcactgttccgaa
ttacattgtgatttggggaaaattcattttgtaggatgctcaaaagttat
ctattagtttttaaaaccttataaaatggttgccactgaacataaaaatg
acactgagggatttgggggataatagctagcaataatagaagtaaagctg
cttattttttcttccactcagacggtaggaagaaaagaattaacttacct
gaccaggcttagattctcacagacaacatatcatattccctggcaagttc
aggtggattgtcattgacatccagaactctatacccacgagacatgctca
gcaaatcaggattgtctgcaaaacacacaggatgtatttagtattttcaa
cacacacttagaagaactggctacaataaatctctatgctgtagctgctc
tagctctgaatgccggacaggtctgtgcaaagacaactttagacctgttc
tgtgaatcttacgtcaggaatgaaatgaaccctcaggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_23366007_23367223
seq2: B6Ng01-082J24.g_69_1258 (reverse)

seq1  AGTCCTGA-TGTTCATTTTTCATTTCTCTGTACGTTAATGAGTTCTAACA  49
      ||||||||  |||||  ||||||| ||    ||||  | || |||  |||
seq2  AGTCCTGAGGGTTCA--TTTCATTCCT---GACGT--AAGA-TTC--ACA  40

seq1  GGAACAATGTTCATAAAGTTGTCTTTTGCCAACAGACCTGCTACGGCATT  99
       |||||  | || |||||||||| |||||  ||||||||| | |||||||
seq2  -GAACA--GGTC-TAAAGTTGTC-TTTGC--ACAGACCTG-TCCGGCATT  82

seq1  CAGAGCTAGAGGCAAGCTACAGCATTAAGGAGATTTATTGTAAGCCAAGT  149
      |||||||||||   |||||||||||    |||||||||||| |||||  |
seq2  CAGAGCTAGAG--CAGCTACAGCAT---AGAGATTTATTGT-AGCCAGTT  126

seq1  CTCTAAAGTGTGTGTTG-AAATACTAAATACATCCCTGTGTGTTTTGCAG  198
      ||   |||||||||||| ||||||||||||||| ||||||||||||||||
seq2  CTTCTAAGTGTGTGTTGAAAATACTAAATACAT-CCTGTGTGTTTTGCAG  175

seq1  ACAATCCTGATTTGCTGAGCCATGTCTCCGTGGGTATTAGAGTTCTGGAT  248
      ||||||||||||||||||| ||||||| |||||||| |||||||||||||
seq2  ACAATCCTGATTTGCTGAG-CATGTCT-CGTGGGTA-TAGAGTTCTGGAT  222

seq1  GTCAATGACAATCCACCTGAACTTGCCAGGGAATATGATATTGTTGTCTG  298
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCAATGACAATCCACCTGAACTTGCCAGGGAATATGATA-TGTTGTCTG  271

seq1  TGAGAATTCTAAGCCTGGTCAGGTAAGTTAATTCTTTTCTTCCTACCGTC  348
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAA-TCTAAGCCTGGTCAGGTAAGTTAATTCTTTTCTTCCTACCGTC  320

seq1  TGAGTGGAAG-AAAAATAAGCAGCTTTACTTCTATTATTGCTAGCTATTA  397
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGAAGAAAAAATAAGCAGCTTTACTTCTATTATTGCTAGCTATTA  370

seq1  TCCCCCAAATCCCTCAGTGTCATTTTTATGTTCAGTGGCAACCATTTTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAAATCCCTCAGTGTCATTTTTATGTTCAGTGGCAACCATTTTAT  420

seq1  AAGGTTTTAAAAACTAATAGATAACTTTTGAGCATCCTACAAAATGAATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTAAAAACTAATAGATAACTTTTGAGCATCCTACAAAATGAATT  470

seq1  TTCCCCAAATCACAATGTAATTCGGAACAGTGAGCTCATTTAGGTATGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAAATCACAATGTAATTCGGAACAGTGAGCTCATTTAGGTATGAT  520

seq1  TCATTCATCATGCCAATAAAATTGTCTTGAATGGTCTAGGTACAGTCCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATCATGCCAATAAAATTGTCTTGAATGGTCTAGGTACAGTCCTA  570

seq1  CATTCAGTGAGAAGCAAACACTGTCTTCTCATGGTCTGAGGAAGCTTAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTGAGAAGCAAACACTGTCTTCTCATGGTCTGAGGAAGCTTAGA  620

seq1  GATCTTATCTGGGAAGAGAGTACAGATCATATCATTTTGGGACTCTAAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTATCTGGGAAGAGAGTACAGATCATATCATTTTGGGACTCTAAAG  670

seq1  AAGTGACACATATGATGAGATACTGGTTATGAAAGGTGCTTGTATACTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACACATATGATGAGATACTGGTTATGAAAGGTGCTTGTATACTTG  720

seq1  TGTGTGTGTGTGTTTGTGTGTGTGTGAGAGAGAGAGACAGAGACAGAGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTTTGTGTGTGTGTGAGAGAGAGAGACAGAGACAGAGAC  770

seq1  AGAGAGACACAGAGAGAGAGGAGATGGTGTGTTTACACTGTAAAAAACCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACACAGAGAGAGAGGAGATGGTGTGTTTACACTGTAAAAAACCT  820

seq1  CTATGCTATATAGGATGAGGAGAGTAAGTAAAAGACAGACAGAGACAGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTATATAGGATGAGGAGAGTAAGTAAAAGACAGACAGAGACAGAG  870

seq1  GCTCAATAAACGTTGGCCTCCATTAAAAGAGATACAGGTGAAGGATAGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATAAACGTTGGCCTCCATTAAAAGAGATACAGGTGAAGGATAGCT  920

seq1  GGAGTCGCCGAGGCAAGCAAACCAGTGGAAGTGAGCATCCATCCTACAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCGCCGAGGCAAGCAAACCAGTGGAAGTGAGCATCCATCCTACAAT  970

seq1  CTTACAAGCACTATGACAAAATAACTCACACCCAAAGCGAGGTGCAGGGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAGCACTATGACAAAATAACTCACACCCAAAGCGAGGTGCAGGGA  1020

seq1  TTTCCTTGGTTGCTGTGACTCACACAAACAAATGCATGACGTCCTTGGGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGGTTGCTGTGACTCACACAAACAAATGCATGACGTCCTTGGGT  1070

seq1  TTTCTTAGAGACCAGAAGAGTGTCAGAACAATAGCATTCTTGTTCTCAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGAGACCAGAAGAGTGTCAGAACAATAGCATTCTTGTTCTCAGG  1120

seq1  CAAGGCATAGAAATCGATTGAGTCTCATAGAATTACTTGCTGCCTCAATT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCATAGAAATCGATTGAGTCTCATAGAATTACTTGCTGCCTCAATT  1170

seq1  TACATCACAATGGAGAATTC  1217
      ||||||||||||||||||||
seq2  TACATCACAATGGAGAATTC  1190


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