BAC Information

Click to search

BAC

Clone NameB6Ng01-082O13
Chromosome15 (Build37)
Map Location 21,855,853 - 21,981,016
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082O13.bB6Ng01-082O13.g
ACCDH897322DH897323
length1,108958
definitionDH897322|Mus musculus domesticus DNA, BAC clone: B6Ng01-082O13, 5' end.DH897323|Mus musculus domesticus DNA, BAC clone: B6Ng01-082O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,979,905 - 21,981,016)(21,855,853 - 21,856,731)
sequence
gaattctagggatggaggagtgtcttcttgtcaggattccaaatataaga
acaaataggaacatctagaaataacatcaaatcaggcatttacaacctct
agccaagtctaagtgaggatgttgagacattcagctgaagttctccactg
agctttctttctatggctcatttcccataggtgagattatacctcctctt
tctcactagatgaaccatgagatgaacaacaataaagccacatagaaata
atttatcctattctcaaggacaccattagacattagactcattctcttca
atgagttaactattttccacttactatcacagatttaaggaaaagcactt
tgtcttcctgccacaattttagagaagagagatgaagaatgtttgaagga
caccttgaataggcacacttgggtctgaaatgaagagagaaaagccaatc
tttcaaataagacatgacagtgtgccaatgtattgtacattgcacttaat
cacaatgtaaatgtgacttagacatttgataaacttctgttctcattttt
atagctattaacttacatttctctcatcatgcaaaagtgtttatccttag
attcattgtcatttgtgctactgatgataggcattctgattaagcgaaga
taagatcttagtagtattaaagccatattcctgattgtcctacagaaggc
cccccttttcttatcaattgtaaagactaatattttctaatctgttttta
ttcttatgattacaactatccagcttcccaacaccatttaagaggtgttt
tattgactgtgcttctctagtaccattttagaaaattgttttttaaaaat
atgtgttattgtaaatgttgtgtagccatgcttagaaaaatgcacttgta
agatgattatttccttaaaggttcagaacagtgtaagattcgaagtaact
agcattacaggtgattgtgagcccagtcatgtgagtgctagaaactgaac
ttcagtcctgtgcaagagaaatacaccccattaactgctgggcaatttct
ctagtcccagctattaagggtgtaatacttcggatggggagtagagaatt
aaattaga
gaattccttttccctatgaccttcagtgtctattgcctcttgtatttcag
ggtcaagacaggatataaaaatgccatctaaggcttaggctgaggcattg
gacattagaagagaaggcagttggtggagaagaaatttttaggaaatagt
tgagttagtagagttagtagttgagttgagcagataggctagaacagttt
tattttgtagctgctagtcctgggaaaagtgcggaaagggggctgtttaa
gtagactgctaggtaactgaggaaggaattattgagagaaatatttgaag
gggcttggctggaaagtggtaggaaggctggtagggagttaagagaactt
gttactattataaaatagctttccattttacaaatgtctcccaacatgga
gctaggcagaatgggaggtttgagttcaagaaccttccagcataaggcat
ggaaaggaacaatggatgctttatttcaaaaagcctacagcatgcttgct
gaggctgttattatactgtgccccctatggttttcagcagattttttttc
tccttttcttcatttggggctattttgtctataaaaatggttgaaggctt
gctgagaaaatgggaaatattggggtaaaaatggagaagcttgaggatca
aaaaagggaaaacaagaggcttcattcctctcttctttctgaaaaataag
aggtgactctgtagctagagaaatagaaagtagagagagatatatttgca
caaacatcaaacactagaaaagaagaaaattggagaacaaataggttcat
tcccagtgagtgaggcagagaggagtttgccccagggagaaagaggagaa
gaaagtgatccagaaagcagttgagtcaaagaaacggaaagcaggaggat
ggtcaagtaagacattcctttcgggagacatgataaacccatagtacctt
ttgaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21979905_21981016
seq2: B6Ng01-082O13.b_51_1158 (reverse)

seq1  TCTAATTTAATTTCTCTTACTACACATCTGAAGTATTTACAACCCTAATA  50
      |||||||||| ||||| |||| | |||| |||||| ||||| || |||||
seq2  TCTAATTTAA-TTCTC-TACTCCCCATCCGAAGTA-TTACACCCTTAATA  47

seq1  GCTGGGACTAGAGAAATTGCTCAGCAGTTAATGGTGTGTATTTCTCTTGC  100
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  GCTGGGACTAGAGAAATTGCCCAGCAGTTAATGGGGTGTATTTCTCTTGC  97

seq1  ACAGGACTGAAGTTCAGTTTCTAGCACTCACATGACTGGGCTCACAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTGAAGTTCAGTTTCTAGCACTCACATGACTGGGCTCACAATCA  147

seq1  CCTGTAATGCTAGTTACTTCGAATCTTACACCTGTTCTGAACCTTTAAGG  200
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTGTAATGCTAGTTACTTCGAATCTTACA-CTGTTCTGAACCTTTAAGG  196

seq1  AAATAATCATCTTACAAGTGCATTTTTCTAAGCATGGCTACACAACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCATCTTACAAGTGCATTTTTCTAAGCATGGCTACACAACATTT  246

seq1  ACAATAACACATATTTTTAAAAAACAATTTTCTAAAATGGTACTAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAACACATATTTTTAAAAAACAATTTTCTAAAATGGTACTAGAGAA  296

seq1  GCACAGTCAATAAAACACCTCTTAAATGGTGTTGGGAAGCTGGATAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTCAATAAAACACCTCTTAAATGGTGTTGGGAAGCTGGATAGTTG  346

seq1  TAATCATAAGAATAAAAACAGATTAGAAAATATTAGTCTTTACAATTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATAAGAATAAAAACAGATTAGAAAATATTAGTCTTTACAATTGAT  396

seq1  AAGAAAAGGGGGGCCTTCTGTAGGACAATCAGGAATATGGCTTTAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGGGGGCCTTCTGTAGGACAATCAGGAATATGGCTTTAATACT  446

seq1  ACTAAGATCTTATCTTCGCTTAATCAGAATGCCTATCATCAGTAGCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGATCTTATCTTCGCTTAATCAGAATGCCTATCATCAGTAGCACAA  496

seq1  ATGACAATGAATCTAAGGATAAACACTTTTGCATGATGAGAGAAATGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATGAATCTAAGGATAAACACTTTTGCATGATGAGAGAAATGTAA  546

seq1  GTTAATAGCTATAAAAATGAGAACAGAAGTTTATCAAATGTCTAAGTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAGCTATAAAAATGAGAACAGAAGTTTATCAAATGTCTAAGTCAC  596

seq1  ATTTACATTGTGATTAAGTGCAATGTACAATACATTGGCACACTGTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTGTGATTAAGTGCAATGTACAATACATTGGCACACTGTCATG  646

seq1  TCTTATTTGAAAGATTGGCTTTTCTCTCTTCATTTCAGACCCAAGTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTGAAAGATTGGCTTTTCTCTCTTCATTTCAGACCCAAGTGTGC  696

seq1  CTATTCAAGGTGTCCTTCAAACATTCTTCATCTCTCTTCTCTAAAATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAAGGTGTCCTTCAAACATTCTTCATCTCTCTTCTCTAAAATTGT  746

seq1  GGCAGGAAGACAAAGTGCTTTTCCTTAAATCTGTGATAGTAAGTGGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAAGACAAAGTGCTTTTCCTTAAATCTGTGATAGTAAGTGGAAAA  796

seq1  TAGTTAACTCATTGAAGAGAATGAGTCTAATGTCTAATGGTGTCCTTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAACTCATTGAAGAGAATGAGTCTAATGTCTAATGGTGTCCTTGAG  846

seq1  AATAGGATAAATTATTTCTATGTGGCTTTATTGTTGTTCATCTCATGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATAAATTATTTCTATGTGGCTTTATTGTTGTTCATCTCATGGTT  896

seq1  CATCTAGTGAGAAAGAGGAGGTATAATCTCACCTATGGGAAATGAGCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGTGAGAAAGAGGAGGTATAATCTCACCTATGGGAAATGAGCCAT  946

seq1  AGAAAGAAAGCTCAGTGGAGAACTTCAGCTGAATGTCTCAACATCCTCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGCTCAGTGGAGAACTTCAGCTGAATGTCTCAACATCCTCAC  996

seq1  TTAGACTTGGCTAGAGGTTGTAAATGCCTGATTTGATGTTATTTCTAGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTTGGCTAGAGGTTGTAAATGCCTGATTTGATGTTATTTCTAGAT  1046

seq1  GTTCCTATTTGTTCTTATATTTGGAATCCTGACAAGAAGACACTCCTCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATTTGTTCTTATATTTGGAATCCTGACAAGAAGACACTCCTCCA  1096

seq1  TCCCTAGAATTC  1112
      ||||||||||||
seq2  TCCCTAGAATTC  1108

seq1: chr15_21855853_21856731
seq2: B6Ng01-082O13.g_69_947

seq1  GAATTCCTTTTCCCTATGACCTTCAGTGTCTATTGCCTCTTGTATTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTCCCTATGACCTTCAGTGTCTATTGCCTCTTGTATTTCAG  50

seq1  GGTCAAGACAGGATATAAAAATGCCATCTAAGGCTTAGGCTGAGGCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGACAGGATATAAAAATGCCATCTAAGGCTTAGGCTGAGGCATTG  100

seq1  GACATTAGAAGAGAAGGCAGTTGGTGGAGAAGAAATTTTTAGGAAATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAGAAGAGAAGGCAGTTGGTGGAGAAGAAATTTTTAGGAAATAGT  150

seq1  TGAGTTAGTAGAGTTAGTAGTTGAGTTGAGCAGATAGGCTAGAACAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAGTAGAGTTAGTAGTTGAGTTGAGCAGATAGGCTAGAACAGTTT  200

seq1  TATTTTGTAGCTGCTAGTCCTGGGAAAAGTGCGGAAAGGGGGCTGTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTAGCTGCTAGTCCTGGGAAAAGTGCGGAAAGGGGGCTGTTTAA  250

seq1  GTAGACTGCTAGGTAACTGAGGAAGGAATTATTGAGAGAAATATTTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTGCTAGGTAACTGAGGAAGGAATTATTGAGAGAAATATTTGAAG  300

seq1  GGGCTTGGCTGGAAAGTGGTAGGAAGGCTGGTAGGGAGTTAAGAGAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGGCTGGAAAGTGGTAGGAAGGCTGGTAGGGAGTTAAGAGAACTT  350

seq1  GTTACTATTATAAAATAGCTTTCCATTTTACAAATGTCTCCCAACATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTATTATAAAATAGCTTTCCATTTTACAAATGTCTCCCAACATGGA  400

seq1  GCTAGGCAGAATGGGAGGTTTGAGTTCAAGAACCTTCCAGCATAAGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCAGAATGGGAGGTTTGAGTTCAAGAACCTTCCAGCATAAGGCAT  450

seq1  GGAAAGGAACAATGGATGCTTTATTTCAAAAAGCCTACAGCATGCTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAACAATGGATGCTTTATTTCAAAAAGCCTACAGCATGCTTGCT  500

seq1  GAGGCTGTTATTATACTGTGCCCCCTATGGTTTTCAGCAGATTTTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTTATTATACTGTGCCCCCTATGGTTTTCAGCAGATTTTTTTTC  550

seq1  TCCTTTTCTTCATTTGGGGCTATTTTGTCTATAAAAATGGTTGAAGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTTCATTTGGGGCTATTTTGTCTATAAAAATGGTTGAAGGCTT  600

seq1  GCTGAGCAAATGGGAAATATTGGGGTAAAAATGGAGAAGCTTGAGGATCA  650
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAAATGGGAAATATTGGGGTAAAAATGGAGAAGCTTGAGGATCA  650

seq1  AAAAAGGGAAAACAAGAGGCTTCATTCCTCTCTTCTTTCTGAAAAATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGAAAACAAGAGGCTTCATTCCTCTCTTCTTTCTGAAAAATAAG  700

seq1  AGGTGACTCTGTAGCTAGAGAAATAGAAAGTAGAGAGAGATATATTTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACTCTGTAGCTAGAGAAATAGAAAGTAGAGAGAGATATATTTGCA  750

seq1  CAAACATCAAACACTAGAAAAGAAGAAAATTGGAGAACAAATAGGTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCAAACACTAGAAAAGAAGAAAATTGGAGAACAAATAGGTTCAT  800

seq1  TCCCAGTGAGTGAGGCAGAGAGGAGTTTGCCCCAGGGAGAAAGAGGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGAGTGAGGCAGAGAGGAGTTTGCCCCAGGGAGAAAGAGGAGAA  850

seq1  GAAAGTGATCCAGAAAGCAGTTGAGTCAA  879
      |||||||||||||||||||||||||||||
seq2  GAAAGTGATCCAGAAAGCAGTTGAGTCAA  879