BAC Information

Click to search

BAC

Clone NameB6Ng01-084A01
Chromosome15 (Build37)
Map Location 81,989,440 - 82,134,841
singlet/doubletdoublet
Overlap geneSrebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl
Upstream geneMkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134
Downstream geneNaga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084A01.bB6Ng01-084A01.g
ACCDH898096DH898097
length1,1481,159
definitionDH898096|Mus musculus domesticus DNA, BAC clone: B6Ng01-084A01, 5' end.DH898097|Mus musculus domesticus DNA, BAC clone: B6Ng01-084A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,133,675 - 82,134,841)(81,989,440 - 81,990,626)
sequence
gaattcaaggcttacatcctggcctctgctggactctggagtgacagcct
gactcaaaacaaacagcagggctgcagagatggctcacttgttaagagca
ctgactgctcttggagagcactcaggttcaattcccagcacctgcgtggt
gcctcacaatcacctgtaactatggttcctacatcatcttctggcctcca
cgggcattacacacatggtacacaacatacatgctagcaaaacacccaaa
caataaaattaaaataaaataaataaaaatgtctaagggtgtgattgctg
tgaagaaatgctatgacggcggtaactcttataaaggaaaacatttaatt
ggggctgcttacagttcagaggtttagtctgttatcattaaggtgggaag
catggcagctcacagacagacttggtgctagagaaggagctgagagcttt
acatctagattggcaggcagcaggaagagagagagactgggcctgacttg
agcacttgaaaccccaaagcccaacccctgtgacacactttcttcaacaa
ggccacatctcctaatagtgcccactttctgagcctagggggaccatttt
cactcaaaccacaaaataaaaagcaaaattctcacaaaaaccaaccaggc
aggaataaagcttttataacaggataacaataacagtgtgatagctagtg
tggtattattttcctacttttattaaaattaattcaagattcattacttg
aatcctgatttttactataacttgagtatctcttactgaaatatttagga
tctgaacagttttagactttggaatgcttgcgtatacaagaaatttgggg
ggggtgagacccaagtccaaatgacattcaactgtttcatatatatccta
cacatataacctgaaaggtaactgtgtataatgttttaagcaatgttatg
cataaacaagtgtcatggatggaattttcagacgagattttggtggcact
caggttcttttgttttgagataggggctgctatatacccagctggctaga
acttgcagtctctgcagcactgagttggtggaattgtcaaggtgatttca
cctttcgaaagatacatccacctgcatgttttttatatgtgtatggcc
gaattccagatgtttgaggcactaaagaaggacttggggaagtcttcaca
aggactttggctaagttgtaaatgaagggtgggtgagcagatgcgtgttt
gtaaaattatttatttgtattttatgtacattggtgttttgcttgggtgc
acgtctgtgtgaggcagtcagattttggagttacagttgtgagctgccat
gtgggggctgggaattgggcctgggtcctctagaagagcggtcagcaagt
acacttttctgctgagccatctctccagcccctagcagaaccgttcttga
taaactgttaccttctcaaccccttttaatcaggcccttctatgcttcag
tgtattctctatctgacaagcttgagttaaaagcaagggtttacttgagg
gaggggagtacatgtattgattgacaatctagaaagctgggcttggaaaa
tgggtttgaatccagagaggctcagcggtgccagagcccagccagggtta
ggataaacagcagcctgctcaggaccccgccttcctgacgacctgttggg
tcctttcctgagtaggagcaggccttaatcagagttgacttgtaggcagc
cttgtcaagacatgcctggtgggcattctccagaggaccagtgggatgct
catggtgtgtgtgcgtgtgcgtgatgaaacgaaatgacagctgtccattg
ctgctcctctctggtgatgatgtcattacggccttcacctaaagcagctc
catccatccatccctctcgcgttccaggatctctgcattgtcatttgcag
ggcatctcctggtgctgttttgttgctgttttccctcaaactgttccttt
ttccttgaatgcgcttccatccctttagctcttagaaccccttttatcaa
ggttcagctttcagtcgcccagagtggtcttttcctcttacagcttacat
gtttgagcatctgactcccttatggcgagctgtgactggtgggtctctgt
ctctctggattctctggaaatgttagacagcattctacacgagtaccact
tagctgcattcagtgtctctcatactccaattagcccaggtctcagtgca
gcagccacctcgattcaagtcctcttgctacagtctccctagtctaggat
taaaaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_82133675_82134841
seq2: B6Ng01-084A01.b_45_1192 (reverse)

seq1  GGCCATACACATAATTAAAAAAAACATTCCAGGTGTGATGGTACTTTCTG  50
      |||||||||||    || |||||||| | |||||| ||||   |||||  
seq2  GGCCATACACA----TATAAAAAACA-TGCAGGTG-GATGTATCTTTCGA  44

seq1  AAGGTGAAATCACCTTGACAATTCCACC-ACTCAGGTTGCTGCAAGAGGA  99
      |||||||||||||||||||||||||||| ||||||  |||||| ||| ||
seq2  AAGGTGAAATCACCTTGACAATTCCACCAACTCAG--TGCTGC-AGA-GA  90

seq1  CTGCAAGTTCTAGGCCAGCCTGGGTTATATAGCAAGACCCTATCTCAAAA  149
      |||||||||||| ||||| ||||| |||||||| || ||||||||| |||
seq2  CTGCAAGTTCTA-GCCAG-CTGGG-TATATAGC-AGCCCCTATCTC-AAA  135

seq1  ACAAAAGAACCCTTGAGTGCCACCAAAAATCTCGTCTGGAAAATTCCATC  199
      |||||||||||  ||||||||||| |||||||||||| ||||||||||| 
seq2  ACAAAAGAACC--TGAGTGCCACC-AAAATCTCGTCT-GAAAATTCCAT-  180

seq1  CCATGACACTTTGTTTTATGCATAACATTGCTTAAAACATTATACACAGT  249
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  CCATGACACTT--GTTTATGCATAACATTGCTTAAAACATTATACACAGT  228

seq1  TACC-TTCAGGTTATATGTGTAGGATATATATGAAACAGTTGAATGTCAT  298
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCAGGTTATATGTGTAGGATATATATGAAACAGTTGAATGTCAT  278

seq1  TTGGACTTGGGTCTCA-CCCCCCCAAATTTCTTGTATACGCAAGCATTCC  347
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGGACTTGGGTCTCACCCCCCCCAAATTTCTTGTATACGCAAGCATTCC  328

seq1  AAAGTCTAAAACTGTTCAGATCCTAAATATTTCAGTAAGAGATACTCAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTAAAACTGTTCAGATCCTAAATATTTCAGTAAGAGATACTCAAG  378

seq1  TTATAGTAAAAATCAGGATTCAAGTAATGAATCTTGAATTAATTTTAATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTAAAAATCAGGATTCAAGTAATGAATCTTGAATTAATTTTAATA  428

seq1  AAAGTAGGAAAATAATACCACACTAGCTATCACACTGTTATTGTTATCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGAAAATAATACCACACTAGCTATCACACTGTTATTGTTATCCT  478

seq1  GTTATAAAAGCTTTATTCCTGCCTGGTTGGTTTTTGTGAGAATTTTGCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAAAGCTTTATTCCTGCCTGGTTGGTTTTTGTGAGAATTTTGCTT  528

seq1  TTTATTTTGTGGTTTGAGTGAAAATGGTCCCCCTAGGCTCAGAAAGTGGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTGTGGTTTGAGTGAAAATGGTCCCCCTAGGCTCAGAAAGTGGG  578

seq1  CACTATTAGGAGATGTGGCCTTGTTGAAGAAAGTGTGTCACAGGGGTTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTAGGAGATGTGGCCTTGTTGAAGAAAGTGTGTCACAGGGGTTGG  628

seq1  GCTTTGGGGTTTCAAGTGCTCAAGTCAGGCCCAGTCTCTCTCTCTTCCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGGTTTCAAGTGCTCAAGTCAGGCCCAGTCTCTCTCTCTTCCTG  678

seq1  CTGCCTGCCAATCTAGATGTAAAGCTCTCAGCTCCTTCTCTAGCACCAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCAATCTAGATGTAAAGCTCTCAGCTCCTTCTCTAGCACCAAG  728

seq1  TCTGTCTGTGAGCTGCCATGCTTCCCACCTTAATGATAACAGACTAAACC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTGAGCTGCCATGCTTCCCACCTTAATGATAACAGACTAAACC  778

seq1  TCTGAACTGTAAGCAGCCCCAATTAAATGTTTTCCTTTATAAGAGTTACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTGTAAGCAGCCCCAATTAAATGTTTTCCTTTATAAGAGTTACC  828

seq1  GCCGTCATAGCATTTCTTCACAGCAATCACACCCTTAGACATTTTTATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCATAGCATTTCTTCACAGCAATCACACCCTTAGACATTTTTATTT  878

seq1  ATTTTATTTTAATTTTATTGTTTGGGTGTTTTGCTAGCATGTATGTTGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTAATTTTATTGTTTGGGTGTTTTGCTAGCATGTATGTTGTG  928

seq1  TACCATGTGTGTAATGCCCGTGGAGGCCAGAAGATGATGTAGGAACCATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTGTGTAATGCCCGTGGAGGCCAGAAGATGATGTAGGAACCATA  978

seq1  GTTACAGGTGATTGTGAGGCACCACGCAGGTGCTGGGAATTGAACCTGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGGTGATTGTGAGGCACCACGCAGGTGCTGGGAATTGAACCTGAG  1028

seq1  TGCTCTCCAAGAGCAGTCAGTGCTCTTAACAAGTGAGCCATCTCTGCAGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCAAGAGCAGTCAGTGCTCTTAACAAGTGAGCCATCTCTGCAGC  1078

seq1  CCTGCTGTTTGTTTTGAGTCAGGCTGTCACTCCAGAGTCCAGCAGAGGCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGTTTGTTTTGAGTCAGGCTGTCACTCCAGAGTCCAGCAGAGGCC  1128

seq1  AGGATGTAAGCCTTGAATTC  1167
      ||||||||||||||||||||
seq2  AGGATGTAAGCCTTGAATTC  1148

seq1: chr15_81989440_81990626
seq2: B6Ng01-084A01.g_66_1223

seq1  GAATTCCAGATGTTTGAGGCACTAAAGAAGGACTTGGGGAAGTCTTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGTTTGAGGCACTAAAGAAGGACTTGGGGAAGTCTTCACA  50

seq1  AGGACTTTGGCTAAGTTGTAAATGAAGGGTGGGTGAGCAGATGCGTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTGGCTAAGTTGTAAATGAAGGGTGGGTGAGCAGATGCGTGTTT  100

seq1  GTAAAATTATTTATTTGTATTTTATGTACATTGGTGTTTTGCTTGGGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTATTTATTTGTATTTTATGTACATTGGTGTTTTGCTTGGGTGC  150

seq1  ACGTCTGTGTGAGGCAGTCAGATTTTGGAGTTACAGTTGTGAGCTGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGTGTGAGGCAGTCAGATTTTGGAGTTACAGTTGTGAGCTGCCAT  200

seq1  GTGGGGGCTGGGAATTGGGCCTGGGTCCTCTAGAAGAGCGGTCAGCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGCTGGGAATTGGGCCTGGGTCCTCTAGAAGAGCGGTCAGCAAGT  250

seq1  ACACTTTTCTGCTGAGCCATCTCTCCAGCCCCTAGCAGAACCGTTCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTTCTGCTGAGCCATCTCTCCAGCCCCTAGCAGAACCGTTCTTGA  300

seq1  TAAACTGTTACCTTCTCAACCCCTTTTAATCAGGCCCTTCTATGCTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGTTACCTTCTCAACCCCTTTTAATCAGGCCCTTCTATGCTTCAG  350

seq1  TGTATTCTCTATCTGACAAGCTTGAGTTAAAAGCAAGGGTTTACTTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTCTATCTGACAAGCTTGAGTTAAAAGCAAGGGTTTACTTGAGG  400

seq1  GAGGGGAGTACATGTATTGATTGACAATCTAGAAAGCTGGGCTTGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGTACATGTATTGATTGACAATCTAGAAAGCTGGGCTTGGAAAA  450

seq1  TGGGTTTGAATCCAGAGAGGCTCAGCGGTGCCAGAGCCCAGCCAGGGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGAATCCAGAGAGGCTCAGCGGTGCCAGAGCCCAGCCAGGGTTA  500

seq1  GGATAAACAGCAGCCTGCTCAGGACCCCGCCTTCCTGACGACCTGTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAACAGCAGCCTGCTCAGGACCCCGCCTTCCTGACGACCTGTTGGG  550

seq1  TCCTTTCCTGAGTAGGAGCAGGCCTTAATCAGAGTTGACTTGTAGGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTGAGTAGGAGCAGGCCTTAATCAGAGTTGACTTGTAGGCAGC  600

seq1  CTTGTCAAGACATGCCTGGTGGGCATTCTCCAGAGGACCAGTGGGATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAAGACATGCCTGGTGGGCATTCTCCAGAGGACCAGTGGGATGCT  650

seq1  CATGGTGTGTGTGCGTGTGCGTGATGAAACGAAATGACAGCTGTCCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTGTGTGCGTGTGCGTGATGAAACGAAATGACAGCTGTCCATTG  700

seq1  CTGCTCCTCTCTGGTGATGATGTCATTACGGCCTTCACCTAAGGCAGCTC  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGCTCCTCTCTGGTGATGATGTCATTACGGCCTTCACCTAAAGCAGCTC  750

seq1  CATCCATCCATCCCTCTCGCGTTCCAGGATCTCTGCATTGTCAATTTGCA  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATCCATCCATCCCTCTCGCGTTCCAGGATCTCTGCATTGTC-ATTTGCA  799

seq1  GGGCATCTCCTGGTGCTGTTTTGTTGCTGTTTTCCCTCAAACTGTTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCTCCTGGTGCTGTTTTGTTGCTGTTTTCCCTCAAACTGTTCCTT  849

seq1  TTTCCTTGAATGCGCTTCCATCCCTTTAGCTCTTAGAACCCCTTTTATCC  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTCCTTGAATGCGCTTCCATCCCTTTAGCTCTTAGAACCCCTTTTAT-C  898

seq1  AGGGTTCAGCTTTCAGTCGCCCAGAGTGGTCCTTTCCTCCTTACAGCCTT  950
      | ||||||||||||||||||||||||||||| |||||| ||||||| |||
seq2  AAGGTTCAGCTTTCAGTCGCCCAGAGTGGTCTTTTCCT-CTTACAG-CTT  946

seq1  ACATGTTTGAGGCATCTGACTCCCTTATGGCGAAGCTGGTGGAACTGGTT  1000
      |||||||||| ||||||||||||||||||||| |||| |||  ||||| |
seq2  ACATGTTTGA-GCATCTGACTCCCTTATGGCG-AGCT-GTG--ACTGG-T  990

seq1  GGGTCTCTGTCCTCTCTGGGATTCTCTTGAATATGTTAGACAAGCATTCT  1050
      |||||||||| |||||| ||||||||| ||| ||||||||| ||||||||
seq2  GGGTCTCTGT-CTCTCT-GGATTCTCTGGAA-ATGTTAGAC-AGCATTCT  1036

seq1  ACCACGAGTACCACTAGGCTGCATCCCAGTGTGCCTCCCCCCTCACCCCC  1100
      | |||||||||||||  |||||||  ||||||       | ||||  | |
seq2  A-CACGAGTACCACTTAGCTGCAT-TCAGTGT-------CTCTCATACTC  1077

seq1  CACTTTTAGGCACAGTCTCAGTGCAGCAGGCCCACCTCAGATTC-AGTCC  1149
      ||   |||| |   |||||||||||||||  ||||||| ||||| |||||
seq2  CA--ATTAGCCCAGGTCTCAGTGCAGCAG--CCACCTC-GATTCAAGTCC  1122

seq1  TCTTGCTTCAGTCTCCCAAATGCTAGGGATTAAAAACC  1187
      ||||||| ||||||||| | | ||| ||||||||||||
seq2  TCTTGCTACAGTCTCCCTAGT-CTA-GGATTAAAAACC  1158