BAC Information

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BAC

Clone NameB6Ng01-084L21
Chromosome15 (Build37)
Map Location 39,493,360 - 39,618,490
singlet/doubletdoublet
Overlap geneRims2, Tm7sf4, Dpys
Upstream geneSiah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215
Downstream geneLrp12, LOC100039130, LOC670013, LOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084L21.bB6Ng01-084L21.g
ACCDH898604DH898605
length1,2251,107
definitionDH898604|Mus musculus domesticus DNA, BAC clone: B6Ng01-084L21, 5' end.DH898605|Mus musculus domesticus DNA, BAC clone: B6Ng01-084L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,493,360 - 39,494,592)(39,617,397 - 39,618,490)
sequence
gaattcttccctggtctgtcatcaacttgcagccaagagaaatgggccta
agcttccctctttggtttcctggctcttcttttaccctatcagcatctcc
cacaggtctgtgaggctcagaacccctgtccagagcagggtttctcggca
atgtctgttcttttaagcctcccgtgcagaccacatgaagttcgtgtagg
caacatgcttggaagcattattatagtcataactgtgaaacctgttctcc
ctcacaagaaagggaaatcattattcaatggaaatggtagtctgctaatc
tctgatggaccaaattatctgatagctgtcacagctagcattttccttcc
tcgttaggattaaagaagggtccctgagagagtgtgtaaatgctgactgg
gtatcagtaacacgagtttctaatcatctcatacaagagcatcctgcaca
tatatgaaaattgtttgtccagactcctcccctagtaaagaatagagttt
agatctaaatccataatgtgggccagagtttatactgctgtgtaaagtgt
tttaagtgctatttcataacagttgtattatagctccttgtaggaatcta
tggtcttgaaaaccaagcacaataataatagttgccattaattgagcagc
ctctatgtattcctttcttttatttcatagaaattcttcaaggggattat
ttttgttgttttactctagtgaaaatatagaagttaaacacattgcttac
aggtaacaaaactcaagtgttactgactcgagtctgtgttgacgggatgt
ttctgtaaacaacgtaagttaattccctatatagtcttgtctttgtctta
tcttttctgcatactttgtgagtttgttttttccatcctttcccttggat
atattcaagaaagatgttctccacatctacggagttattttaaataaaag
tgatagcactactacttttcctgttatttacaatttataaattgcattca
cttatttagcattgatcttgtatttggaacacgttatattttcattgtgt
aatatattttggttctaaccactgacctcttttctgatacagaccatatg
ttatatataggattttggatatttcaggccgctttccaagatgttaagaa
ctatttagaacaaggtttccatttggaatatgaagcactcttcacttcca
ccatgtcagaaaaaaaggttgtgtg
gaattcctgctcacttatctgaaaggttgtgcagtgtagggtggcaaggc
acttgagaggcgttgatttatttctaagacggcagtggtaagagcagcct
ccatctctttatcattctggtagaaaaaccaggctttcctacctgaagtg
tctgaggtggatgagcagtagaaccttagtctggacctggctggcaggac
tgagacatagatggtgtgagcaaagtggggactaccaggctacatgctgt
ccagaggcctgaccaggacagtgactggacagctggaaagcaattattag
ataccaggtgacctgatgagacctggacattgaatgcagttaattaacaa
gaaagggcagttctgcaagtaacacgtggtgatgggtacgacaaaggagc
ttggggaaaaatggagtcagtctggaccagaacatctcacacaagaagaa
aaacaccctgactctctgctccaaagatcgttttcctcatgtttttgttt
ttttttgtttttgtttttgtttttttggcatattgcttatatttatcatt
aggaaacaacagagtaacctaccaagccccagtcttctgggagagacagt
cgaggcaaaggcaactgcagaacacactcgtgtgtctatccaagagtccc
cacgggagagacagcttcaggtctggtgtttacctgagctgagctataaa
agacaaatgaaagggaaagaagaggtcaatcatgctggtctgtgcacaag
cctgaactgtgatttctggtgcaggtccttgagtctgcagctaggatcca
tggaaagggatgcttagagcagctgaccagtctgtagaagagcagttctc
aaccccttttggagagaccagctaagactctctgaaaccacagatgttta
cattatgattcatagcagcctgcaaaaaaataacagttattgaagtagca
atgaaaaattatttttggtttggggggggtcaactaatacatgaaggagc
tgttttaaagggtttgcagcattaggaaaggtttgagagtactgttctaa
acagccccaccagaaacgagcagacctgcacagctgggtacagtgatctg
cttcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39493360_39494592
seq2: B6Ng01-084L21.b_41_1265

seq1  GAATTCTTCCCTGGTCTGTCATCAACTTGCAGCCAAGAGAAATGGGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTGGTCTGTCATCAACTTGCAGCCAAGAGAAATGGGCCTA  50

seq1  AGCTTCCCTCTTTGGTTTCCTGGCTCTTCTTTTACCCTATCAGCATCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCTCTTTGGTTTCCTGGCTCTTCTTTTACCCTATCAGCATCTCC  100

seq1  CACAGGTCTGTGAGGCTCAGAACCCCTGTCCAGAGCAGGGTTTCTCGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTCTGTGAGGCTCAGAACCCCTGTCCAGAGCAGGGTTTCTCGGCA  150

seq1  ATGTCTGTTCTTTTAAGCCTCCCGTGCAGACCACATGAAGTTCGTGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTCTTTTAAGCCTCCCGTGCAGACCACATGAAGTTCGTGTAGG  200

seq1  CAACATGCTTGGAAGCATTATTATAGTCATAACTGTGAAACCTGTTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGCTTGGAAGCATTATTATAGTCATAACTGTGAAACCTGTTCTCC  250

seq1  CTCACAAGAAAGGGAAATCATTATTCAATGGAAATGGTAGTCTGCTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGAAAGGGAAATCATTATTCAATGGAAATGGTAGTCTGCTAATC  300

seq1  TCTGATGGACCAAATTATCTGATAGCTGTCACAGCTAGCATTTTCCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGACCAAATTATCTGATAGCTGTCACAGCTAGCATTTTCCTTCC  350

seq1  TCGTTAGGATTAAAGAAGGGTCCCTGAGAGAGTGTGTAAATGCTGACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAGGATTAAAGAAGGGTCCCTGAGAGAGTGTGTAAATGCTGACTGG  400

seq1  GTATCAGTAACACGAGTTTCTAATCATCTCATACAAGAGCATCCTGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGTAACACGAGTTTCTAATCATCTCATACAAGAGCATCCTGCACA  450

seq1  TATATGAAAATTGTTTGTCCAGACTCCTCCCCTAGTAAAGAATAGAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAAAATTGTTTGTCCAGACTCCTCCCCTAGTAAAGAATAGAGTTT  500

seq1  AGATCTAAATCCATAATGTGGGCCAGAGTTTATACTGCTGTGTAAAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAAATCCATAATGTGGGCCAGAGTTTATACTGCTGTGTAAAGTGT  550

seq1  TTTAAGTGCTATTTCATAACAGTTGTATTATAGCTCCTTGTAGGAATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGCTATTTCATAACAGTTGTATTATAGCTCCTTGTAGGAATCTA  600

seq1  TGGTCTTGAAAACCAAGCACAATAATAATAGTTGCCATTAATTGAGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTGAAAACCAAGCACAATAATAATAGTTGCCATTAATTGAGCAGC  650

seq1  CTCTATGTATTCCTTTCTTTTATTTCATAGAAATTCTTCAAGGGGATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGTATTCCTTTCTTTTATTTCATAGAAATTCTTCAAGGGGATTAT  700

seq1  TTTTGTTGTTTTACTCTAGTGAAAATATAGAAGTTAAACACATTGCTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTTTTACTCTAGTGAAAATATAGAAGTTAAACACATTGCTTAC  750

seq1  AGGTAACAAAACTCAAGTGTTACTGACTCGAGTCTGTGTTGACGGGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACAAAACTCAAGTGTTACTGACTCGAGTCTGTGTTGACGGGATGT  800

seq1  TTCTGTAAACAACGTAAGTTAATTCCCTATATAGTCTTGTCTTTGTCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAACAACGTAAGTTAATTCCCTATATAGTCTTGTCTTTGTCTTA  850

seq1  TCTTTTCTGCATACTTTGTGAGTTTGTTTTTTCCATCCTTTCCCTTGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTGCATACTTTGTGAGTTTGTTTTTTCCATCCTTTCCCTTGGAT  900

seq1  ATATTCAAGAAAGATGTTCTCCACATCTACGGAGTTATTTTAAATAAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAGAAAGATGTTCTCCACATCTACGGAGTTATTTTAAATAAAAG  950

seq1  TGATAGCACTACTACTTTTCCTGTTATTTAACAATTTATAAATTGCATTC  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGATAGCACTACTACTTTTCCTGTTATTT-ACAATTTATAAATTGCATTC  999

seq1  ACTTATTTAGCATTGATC-TGTATTT-GAACACGTTATATTTTCATTGTG  1048
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  ACTTATTTAGCATTGATCTTGTATTTGGAACACGTTATATTTTCATTGTG  1049

seq1  TAATATA-TTTGGTTCTAA-CACTGA-CTC-TTTCTGATACAGACCAT-T  1093
      ||||||| ||||||||||| |||||| ||| ||||||||||||||||| |
seq2  TAATATATTTTGGTTCTAACCACTGACCTCTTTTCTGATACAGACCATAT  1099

seq1  AGTATATATAGGATATTTGAATATTTCAGG-CACTTACAAGAATGTAGAG  1142
        |||||||||||| |||| |||||||||| | ||| | |  ||||  ||
seq2  GTTATATATAGGAT-TTTGGATATTTCAGGCCGCTTTCCAAGATGTTAAG  1148

seq1  -ACTATTTTAAGACAATGTTTCCATTTGTAATTATAGAAGCAACTCTTCA  1191
       |||| ||||  |||| ||||||||||| || ||| ||||| ||||||||
seq2  AACTA-TTTAGAACAAGGTTTCCATTTGGAA-TAT-GAAGC-ACTCTTCA  1194

seq1  ACTTTCCACCCATTGGTTCCAAGAAAAAAAAAATGTTGTGTG  1233
         ||||| ||||  ||       | ||||||| ||||||||
seq2  --CTTCCA-CCAT--GT------CAGAAAAAAAGGTTGTGTG  1225

seq1: chr15_39617397_39618490
seq2: B6Ng01-084L21.g_71_1177 (reverse)

seq1  TTTGGAGCAGATCACTGTA-CCAGCTGTGCTGGGTCCTGCTCGTTTCTGG  49
      |||| |||||||||||||| |||||||||| ||   ||||||||||||||
seq2  TTTGAAGCAGATCACTGTACCCAGCTGTGCAGG--TCTGCTCGTTTCTGG  48

seq1  TGGGCTTGTTTTAGAACAGTGACTCTCAA--CCTTCCTAATGCTGC-AAC  96
      ||||  || ||||||||||| ||||||||  | ||||||||||||| |||
seq2  TGGGGCTG-TTTAGAACAGT-ACTCTCAAACCTTTCCTAATGCTGCAAAC  96

seq1  CCTTTAAAACAGCTCC-TCATGTATT-GGTGACCCCCCC--AACCAAAAT  142
      |||||||||||||||| ||||||||| | ||||||||||  |||||||| 
seq2  CCTTTAAAACAGCTCCTTCATGTATTAGTTGACCCCCCCCAAACCAAAAA  146

seq1  TA--TTTTCATTGCTACTTC-ATAACTGT--ATTTTTTGCA-GCTGCTAT  186
      ||  |||||||||||||||| ||||||||   ||||||||| ||||||||
seq2  TAATTTTTCATTGCTACTTCAATAACTGTTATTTTTTTGCAGGCTGCTAT  196

seq1  GAATCATAATGTAAACATCTGTGGTTTCAGAGAGTCTTAGCTGGTCTCTC  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATAATGTAAACATCTGTGGTTTCAGAGAGTCTTAGCTGGTCTCTC  246

seq1  C-AAAGGGGTTGAGAACTGCTCTTCTACAGACTGGTCAGCTGCTCTAAGC  285
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGGGTTGAGAACTGCTCTTCTACAGACTGGTCAGCTGCTCTAAGC  296

seq1  ATCCC-TTCCATGGATCCTAGCTGCAGACTC-AGGACCTGCACCAGAAAT  333
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCCCTTTCCATGGATCCTAGCTGCAGACTCAAGGACCTGCACCAGAAAT  346

seq1  CACAGTTCAGGCTTGTGCACAGACCAGCATGATTGACCTCTTCTTTCCCT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCAGGCTTGTGCACAGACCAGCATGATTGACCTCTTCTTTCCCT  396

seq1  TTCATTTGTCTTTTATAGCTCAGCTCAGGTAAACACCAGACCTGAAGCTG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTCTTTTATAGCTCAGCTCAGGTAAACACCAGACCTGAAGCTG  446

seq1  TCTCTCCCGTGGGGACTCTTGGATAGACACACGAGTGTGTTCTGCAGTTG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCGTGGGGACTCTTGGATAGACACACGAGTGTGTTCTGCAGTTG  496

seq1  CCTTTGCCTCGACTGTCTCTCCCAGAAGACTGGGGCTTGGTAGGTTACTC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCTCGACTGTCTCTCCCAGAAGACTGGGGCTTGGTAGGTTACTC  546

seq1  TGTTGTTTCCTAATGATAAATATAAGCAATATGCCAAAAAAACAAAAACA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTCCTAATGATAAATATAAGCAATATGCCAAAAAAACAAAAACA  596

seq1  AAAACAAAAAAAAACAAAAACATGAGGAAAACGATCTTTGGAGCAGAGAG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAAAAACAAAAACATGAGGAAAACGATCTTTGGAGCAGAGAG  646

seq1  TCAGGGTGTTTTTCTTCTTGTGTGAGATGTTCTGGTCCAGACTGACTCCA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGTTTTTCTTCTTGTGTGAGATGTTCTGGTCCAGACTGACTCCA  696

seq1  TTTTTCCCCAAGCTCCTTTGTCGTACCCATCACCACGTGTTACTTGCAGA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCCAAGCTCCTTTGTCGTACCCATCACCACGTGTTACTTGCAGA  746

seq1  ACTGCCCTTTCTTGTTAATTAACTGCATTCAATGTCCAGGTCTCATCAGG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCTTTCTTGTTAATTAACTGCATTCAATGTCCAGGTCTCATCAGG  796

seq1  TCACCTGGTATCTAATAATTGCTTTCCAGCTGTCCAGTCACTGTCCTGGT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGGTATCTAATAATTGCTTTCCAGCTGTCCAGTCACTGTCCTGGT  846

seq1  CAGGCCTCTGGACAGCATGTAGCCTGGTAGTCCCCACTTTGCTCACACCA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTCTGGACAGCATGTAGCCTGGTAGTCCCCACTTTGCTCACACCA  896

seq1  TCTATGTCTCAGTCCTGCCAGCCAGGTCCAGACTAAGGTTCTACTGCTCA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTCTCAGTCCTGCCAGCCAGGTCCAGACTAAGGTTCTACTGCTCA  946

seq1  TCCACCTCAGACACTTCAGGTAGGAAAGCCTGGTTTTTCTACCAGAATGA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCAGACACTTCAGGTAGGAAAGCCTGGTTTTTCTACCAGAATGA  996

seq1  TAAAGAGATGGAGGCTGCTCTTACCACTGCCGTCTTAGAAATAAATCAAC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGATGGAGGCTGCTCTTACCACTGCCGTCTTAGAAATAAATCAAC  1046

seq1  GCCTCTCAAGTGCCTTGCCACCCTACACTGCACAACCTTTCAGATAAGTG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCAAGTGCCTTGCCACCCTACACTGCACAACCTTTCAGATAAGTG  1096

seq1  AGCAGGAATTC  1094
      |||||||||||
seq2  AGCAGGAATTC  1107