BAC Information

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BAC

Clone NameB6Ng01-084N16
Chromosome15 (Build37)
Map Location 3,612,913 - 3,614,106
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674207, LOC666163, EG666167, Sepp1, LOC100039139, Ghr
Downstream geneLOC223278, Fbxo4, AW549877, LOC100039196, Oxct1, Plcxd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084N16.bB6Ng01-084N16.g
ACCDH898686DH898687
length1,1861,234
definitionDH898686|Mus musculus domesticus DNA, BAC clone: B6Ng01-084N16, 5' end.DH898687|Mus musculus domesticus DNA, BAC clone: B6Ng01-084N16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcatcctgcaatgagcatatcaaatatagataatgtgcagatgt
gaaccaaaatttttctttatagcatagattttgatatgcttcagcaatac
tgatttttcaaatggtaatacatatcaaaaattctgaaatctctaaattc
tactggagaaaactcaattggttgtatgttaatttgcctttaaaaccata
cttccaataacttgtatattctaactgcattgaaagtcacgattgcaaat
taaatgatgcattgccatggactttgatttatactcatcacttttatatc
tccagggtcctaatatatctgtcttctgagaggctctccagagcttgaca
aatacagaggtggatgctcgcagccaaccattggactgagcacaaggtcc
ccaaatgaaggagttagaggaagtacccaaggagctgaaggagtttacaa
ccccatagaaagaacaacaatatgaattaaccagaatctccagagctccc
tgggactaaaccactaaccagagtacagatgggaggacccatggcttcag
ccacatatgtagcagaggatggccttgttgggcatcggtgggagaagagg
cccttggtcctgtgaaggctttatgccccagtgtaaaggaatgtcagggc
atggaggcaggagtgggtgggtgggtaggggagcaacctcatagggggag
cggtaggggatagaggataacatttgaaatgtaaatacataaaatatcca
ataaaagaaaaggaaaaaagttatgtgagtcactttaaaatgtcaaaaaa
acaagatttcttagaaaaactaaatcaccacctattaccatctttcatgt
tctgacactacttgataaacatcatcctgtgtatgcatcttcaatggctc
cactctaatggaaaaaacaagtctaaactatgcaaccagatccactctgc
tctcccagtctgataactaaccctatcttcttccttgatctctttccttc
aaaccctctgttactgtgctaatttctccagccaagggaacaagttttcg
gatatgattccctgtagggaaattccagagagcatttcaacaaattccag
agaataaattaattggagtgatggtaaccgtgtggatagaagaccaccgt
gatataaatataatggcttgtgaccagagacacttg
gaattctgcttttctaggagaattgatgctgctcagctgaggctgaagag
tcaactatgattaagaagagaccagcatcactgaagagtcaactatgatt
aagaagagaccagcatcactgaggtgaagtcttctggacatacttcctca
ggttcagtgcacagagactgtggtccagagggatttgagattgcatctca
cagtgggtgttgaacttagtaacaggtgtaagaatcacccagttgatact
ggttttgaagtaccagttctggaaaccgccaagcctacccaccgtgggta
tggtaattttaagggtgatacagagtcacatggagttttgctaaatcagg
ctcacatgctgaggcaagacacttgctgagacaagacccatggaggacag
gtgatgtttggagggagtacaaataggatccaatggactgtgacagagac
tggtttgactgggcttgctcatagagctagctgttcaacctttctgaggc
cataggattatgagggagtgccagatgctagatatggagcaacaagactg
gatgtacacacttagatttgtgggtgtgctttgatatgattatagttgtg
ctatggctttcccttttctgaataagaaagcatacagcttatttctgatg
ttaatagagcccagtataagggataatgcttgctagtcttatgctcactt
gccacacagactagactttatctgaagggagggaatcttaactgagaaaa
tactaccataagattttccataagaaaatgccatggagaattattttcat
tagttattgataggggaaggcccagtcaattttggatggttccattcctg
ggttctataacaaaggagtcttcaacaaactatgaaaagaaagccagcaa
gcagcacccttctaaaacttctgcatcagttcctgtaatcaggttcctgt
cctgcttgagttcttgtcctgatttctctaatgatagaatatgatttaga
ggtgcaagccaaaggaactctttcctccccacctgcctctattggtcatt
gtggttcatatagccattagaaaccttactatgaacagggtatttggttt
ttaaagaactagacctttttttaatttgaattttaaagactctgaacctt
tatatttctatataatattagatttgcttgaatacctattcaagcatgat
ccagagatcccccatacctctttcgctagcatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_3612913_3614106
seq2: B6Ng01-084N16.b_47_1232

seq1  GAATTCTCATCCTGCAATGAGCATATCAAATATAGATAATGTGCAGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCCTGCAATGAGCATATCAAATATAGATAATGTGCAGATGT  50

seq1  GAACCAAAATTTTTCTTTATAGCATAGATTTTGATATGCTTCAGCAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAAATTTTTCTTTATAGCATAGATTTTGATATGCTTCAGCAATAC  100

seq1  TGATTTTTCAAATGGTAATACATATCAAAAATTCTGAAATCTCTAAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTCAAATGGTAATACATATCAAAAATTCTGAAATCTCTAAATTC  150

seq1  TACTGGAGAAAACTCAATTGGTTGTATGTTAATTTGCCTTTAAAACCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAGAAAACTCAATTGGTTGTATGTTAATTTGCCTTTAAAACCATA  200

seq1  CTTCCAATAACTTGTATATTCTAACTGCATTGAAAGTCACGATTGCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAATAACTTGTATATTCTAACTGCATTGAAAGTCACGATTGCAAAT  250

seq1  TAAATGATGCATTGCCATGGACTTTGATTTATACTCATCACTTTTATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATGCATTGCCATGGACTTTGATTTATACTCATCACTTTTATATC  300

seq1  TCCAGGGTCCTAATATATCTGTCTTCTGAGAGGCTCTCCAGAGCTTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTCCTAATATATCTGTCTTCTGAGAGGCTCTCCAGAGCTTGACA  350

seq1  AATACAGAGGTGGATGCTCGCAGCCAACCATTGGACTGAGCACAAGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGAGGTGGATGCTCGCAGCCAACCATTGGACTGAGCACAAGGTCC  400

seq1  CCAAATGAAGGAGTTAGAGGAAGTACCCAAGGAGCTGAAGGAGTTTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGAAGGAGTTAGAGGAAGTACCCAAGGAGCTGAAGGAGTTTACAA  450

seq1  CCCCATAGAAAGAACAACAATATGAATTAACCAGAATCTCCAGAGCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAGAAAGAACAACAATATGAATTAACCAGAATCTCCAGAGCTCCC  500

seq1  TGGGACTAAACCACTAACCAGAGTACAGATGGGAGGACCCATGGCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTAAACCACTAACCAGAGTACAGATGGGAGGACCCATGGCTTCAG  550

seq1  CCACATATGTAGCAGAGGATGGCCTTGTTGGGCATCGGTGGGAGAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATATGTAGCAGAGGATGGCCTTGTTGGGCATCGGTGGGAGAAGAGG  600

seq1  CCCTTGGTCCTGTGAAGGCTTTATGCCCCAGTGTAAAGGAATGTCAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTCCTGTGAAGGCTTTATGCCCCAGTGTAAAGGAATGTCAGGGC  650

seq1  ATGGAGGCAGGAGTGGGTGGGTGGGTAGGGGAGCAACCTCATAGGGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGCAGGAGTGGGTGGGTGGGTAGGGGAGCAACCTCATAGGGGGAG  700

seq1  CGGTAGGGGATAGAGGATAACATTTGAAATGTAAATACATAAAATATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGGGGATAGAGGATAACATTTGAAATGTAAATACATAAAATATCCA  750

seq1  ATAAAAGAAAAGGAAAAAAGTTATGTGAGTCACTTTAAAATGTCAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAAAGGAAAAAAGTTATGTGAGTCACTTTAAAATGTCAAAAAA  800

seq1  ACAAGATTTCTTAGAAAAACTAAATCACCACCTATTACCATCTTTCATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATTTCTTAGAAAAACTAAATCACCACCTATTACCATCTTTCATGT  850

seq1  TCTGACACTACTTGATAAACATCATCCTGTGTATGCATCTTCAATGGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACACTACTTGATAAACATCATCCTGTGTATGCATCTTCAATGGCTC  900

seq1  CACTCTAATGGAAAAAAACAAGTCTAAAACTATGCAACCAGATCCACTCT  950
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  CACTCTAATGG-AAAAAACAAGTCT-AAACTATGCAACCAGATCCACTCT  948

seq1  GCTCTCCCAGTTCTGATAACTAACCCTTATCTTCTTCCTTGATCTCTTTT  1000
      |||||||||| ||||||||||||||| ||||||||||||||||||| |||
seq2  GCTCTCCCAG-TCTGATAACTAACCC-TATCTTCTTCCTTGATCTC-TTT  995

seq1  CCTTCAAACCCTCCTGTACTGTGCTAATTTCTCCAGCCAA-GGAACAAGT  1049
      |||||||||||||   |||||||||||||||||||||||| |||||||||
seq2  CCTTCAAACCCTCTGTTACTGTGCTAATTTCTCCAGCCAAGGGAACAAGT  1045

seq1  GTTCAGAATATGAT--CCTGTGAGGGACATTTCAGAGTAGCAATTTACAA  1097
       ||| | |||||||  ||||| ||||| ||| ||||| ||||  || |||
seq2  TTTC-GGATATGATTCCCTGT-AGGGAAATTCCAGAG-AGCA--TTTCAA  1090

seq1  CAATATCCCAGAGATAAAATTAAAATTGAAGTAGTTGATACGGTGT-GAT  1146
      ||| || |||||||  |||||  ||||| |||  | |  || |||| |||
seq2  CAA-ATTCCAGAGAATAAATT--AATTGGAGTGATGGTAACCGTGTGGAT  1137

seq1  GAAAG--CAACGTGATAATAAAGATAATGGCCTTTGACCAGAGACACTTG  1194
        |||  || |||||| ||||| |||||||| | ||||||||||||||||
seq2  AGAAGACCACCGTGAT-ATAAATATAATGGCTTGTGACCAGAGACACTTG  1186