BAC Information

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BAC

Clone NameB6Ng01-085K16
Chromosome15 (Build37)
Map Location 98,777,536 - 98,976,419
singlet/doubletdoublet
Overlap geneTuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2
Upstream geneTmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b
Downstream geneKcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085K16.bB6Ng01-085K16.g
ACCDH899279DH899280
length1,149156
definitionDH899279|Mus musculus domesticus DNA, BAC clone: B6Ng01-085K16, 5' end.DH899280|Mus musculus domesticus DNA, BAC clone: B6Ng01-085K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,975,265 - 98,976,419)(98,777,536 - 98,777,691)
sequence
gaattctcagctcctcttccaggaccccccccatgcttcccaccttgatg
aactgaacagtcccgccagggactgaacctccgtatctgtgtacgcctca
atcaaacgttgtcctttataagagttaccttgtcatggtgtctcttccca
gcaacagacaccctaactaagacaagaacacttgctgctcttgcagaaga
ctcaggttcaattcccagcacccatacggcggctcacaattggtctgcat
ctcgagtccacaggatccaatgccttcttctagtctccacaggcaccagg
cttgcaagtggtcaccagacatacatgcagaaaaaacatccataaacata
aaaatgtttacattcttaatgtacagtttgcaattacaattaaacataac
ttctgcaggaaaattaaaaccacttcagaaaaaaactagctgtctccaac
agaatgggaaaggcatagtggaagagaagagcagcaggggagggcaaggc
agtgcagacctacagaaaagtaattgctttccccatcctgtgaggacttc
caaatagacattttgaaagtgctagctttcatctgctaagtcactaaaac
accctgaattatttagcagcagtttaattaacctttcttcacttttttct
agatagttaaatgtttgttttagaaaataccaagaaaaatatagtcataa
tttagtaaggcaccttaaggaataaaatatatatcctgttttatgatgat
tctttacatagtgaataatacaggtatttgaaactatgcttaagatttat
ttttattttattatgtgcatgagtgttttgaaagcatgttaaatgcaccg
cacgcacgcaagcagggcacgcagcgcccagaagaaagcaaccagatccc
ttgaaactggcgttctaggagtgagaaacccaggtccttacagatcagag
cagcaaatgctcttagcccctacccagactactccatgcactggactatc
tcagagcctttgcatcactattctgattattcattaaaggaaagaaggtt
gggggtcccacctcagtcccaaccacttgaagctgagcaagaagaacgct
gggcgttccaggcttaacctggatacacaggaatctcctttggaaaaaa
actaagtagaccaggctgggcttgaactcacagagatccacctgcctctg
cttcccaagtgcagagattattaaaagcgcatgccaccatgtccagcctc
attgcacttggttttaattctttcctgtgcgtgtatgtggggagaggggg
gagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98975265_98976419
seq2: B6Ng01-085K16.b_46_1194 (reverse)

seq1  TTTTTTCAAAAGGAGATTCTGCTGTGTATCCCAGGTT-AGCCTTGGACGC  49
      ||||||| |||||||||||  |||||||| ||||||| ||||| | ||||
seq2  TTTTTTCCAAAGGAGATTC--CTGTGTAT-CCAGGTTAAGCCTGGAACGC  47

seq1  CCAGCAGTCTTCTTGCTTCAGCCTCCAAGT-GCTGGGACTGAGGTGTG-C  97
      |||||  ||||||||| |||| || ||||| | ||||||||||||| | |
seq2  CCAGCGTTCTTCTTGC-TCAG-CTTCAAGTGGTTGGGACTGAGGTGGGAC  95

seq1  CCCCAACCTTTCTTTCCTTTTATGAATTAATCAGAATAGTGATGCAAAGG  147
      |||||||| ||||||||||| ||||| |||||||||||||||||||||||
seq2  CCCCAACC-TTCTTTCCTTTAATGAA-TAATCAGAATAGTGATGCAAAGG  143

seq1  CTCCTGAGATAGTTCAGTGCATGGAGTAGTCTTGGGTAGGGGCTAAGAGC  197
      || |||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  CT-CTGAGATAGTCCAGTGCATGGAGTAGTC-TGGGTAGGGGCTAAGAGC  191

seq1  ATTTGCTGCTCTGATCTTGTAAGGACCTGGGTTTCTCACTCCTAGAACGC  247
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTTGCTGCTCTGATC-TGTAAGGACCTGGGTTTCTCACTCCTAGAACGC  240

seq1  CAGTTTCAAGGGATCTGGTTGCTTTCTTCTGGGCGCTGCGTGCCCTGCCT  297
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGTTTCAAGGGATCTGGTTGCTTTCTTCTGGGCGCTGCGTGCCCTGCTT  290

seq1  GCGTGCGTGCGGTGCATTTAACATGCTTTCAAAACACTCATGCACATAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGTGCGGTGCATTTAACATGCTTTCAAAACACTCATGCACATAAT  340

seq1  AAAATAAAAATAAATCTTAAGCATAGTTTCAAATACCTGTATTATTCACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAATAAATCTTAAGCATAGTTTCAAATACCTGTATTATTCACT  390

seq1  ATGTAAAGAATCATCATAAAACAGGATATATATTTTATTCCTTAAGGTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGAATCATCATAAAACAGGATATATATTTTATTCCTTAAGGTGC  440

seq1  CTTACTAAATTATGACTATATTTTTCTTGGTATTTTCTAAAACAAACATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAAATTATGACTATATTTTTCTTGGTATTTTCTAAAACAAACATT  490

seq1  TAACTATCTAGAAAAAAGTGAAGAAAGGTTAATTAAACTGCTGCTAAATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATCTAGAAAAAAGTGAAGAAAGGTTAATTAAACTGCTGCTAAATA  540

seq1  ATTCAGGGTGTTTTAGTGACTTAGCAGATGAAAGCTAGCACTTTCAAAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGGTGTTTTAGTGACTTAGCAGATGAAAGCTAGCACTTTCAAAAT  590

seq1  GTCTATTTGGAAGTCCTCACAGGATGGGGAAAGCAATTACTTTTCTGTAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTTGGAAGTCCTCACAGGATGGGGAAAGCAATTACTTTTCTGTAG  640

seq1  GTCTGCACTGCCTTGCCCTCCCCTGCTGCTCTTCTCTTCCACTATGCCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCACTGCCTTGCCCTCCCCTGCTGCTCTTCTCTTCCACTATGCCTT  690

seq1  TCCCATTCTGTTGGAGACAGCTAGTTTTTTTCTGAAGTGGTTTTAATTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTCTGTTGGAGACAGCTAGTTTTTTTCTGAAGTGGTTTTAATTTT  740

seq1  CCTGCAGAAGTTATGTTTAATTGTAATTGCAAACTGTACATTAAGAATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGAAGTTATGTTTAATTGTAATTGCAAACTGTACATTAAGAATGT  790

seq1  AAACATTTTTATGTTTATGGATGTTTTTTCTGCATGTATGTCTGGTGACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTTATGTTTATGGATGTTTTTTCTGCATGTATGTCTGGTGACC  840

seq1  ACTTGCAAGCCTGGTGCCTGTGGAGACTAGAAGAAGGCATTGGATCCTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAAGCCTGGTGCCTGTGGAGACTAGAAGAAGGCATTGGATCCTGT  890

seq1  GGACTCGAGATGCAGACCAATTGTGAGCCGCCGTATGGGTGCTGGGAATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCGAGATGCAGACCAATTGTGAGCCGCCGTATGGGTGCTGGGAATT  940

seq1  GAACCTGAGTCTTCTGCAAGAGCAGCAAGTGTTCTTGTCTTAGTTAGGGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGAGTCTTCTGCAAGAGCAGCAAGTGTTCTTGTCTTAGTTAGGGT  990

seq1  GTCTGTTGCTGGGAAGAGACACCATGACAAGGTAACTCTTATAAAGGACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTGCTGGGAAGAGACACCATGACAAGGTAACTCTTATAAAGGACA  1040

seq1  ACGTTTGATTGAGGCGTACACAGATACGGAGGTTCAGTCCCTGGCGGGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTGATTGAGGCGTACACAGATACGGAGGTTCAGTCCCTGGCGGGAC  1090

seq1  TGTTCAGTTCATCAAGGTGGGAAGCAT-GGCGGGGTCCTGGAAGAGGAGC  1146
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  TGTTCAGTTCATCAAGGTGGGAAGCATGGGGGGGGTCCTGGAAGAGGAGC  1140

seq1  TGAGAATTC  1155
      |||||||||
seq2  TGAGAATTC  1149

seq1: chr15_98777536_98777691
seq2: B6Ng01-085K16.g_76_231

seq1  ACTAAGTAGACCAGGCTGGGCTTGAACTCACAGAGATCCACCTGCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTAGACCAGGCTGGGCTTGAACTCACAGAGATCCACCTGCCTCTG  50

seq1  CTTCCCAAGTGCAGAGATTATTAAAAGCGCATGCCACCATGTCCAGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAAGTGCAGAGATTATTAAAAGCGCATGCCACCATGTCCAGCCTC  100

seq1  ATTGCACTTGGTTTTAATTCTTTCCTGTGCGTGTATGTGGGGAGAGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACTTGGTTTTAATTCTTTCCTGTGCGTGTATGTGGGGAGAGGGGG  150

seq1  GAGGGG  156
      ||||||
seq2  GAGGGG  156