BAC Information

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BAC

Clone NameB6Ng01-085P15
Chromosome15 (Build37)4 (Build37)
Map Location 65,617,967 - 65,619,10137,541,422 - 37,541,776
singlet/doubletsingletsinglet
Overlap geneC920006C10Rik
Upstream geneAdcy8, LOC268812, LOC100040790, LOC665836
Downstream geneOc90, F930104E18Rik, LOC100040835, Kcnq3, Lrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085P15.bB6Ng01-085P15.g
ACCDH899498DH899499
length1,119968
definitionDH899498|Mus musculus domesticus DNA, BAC clone: B6Ng01-085P15, 5' end.DH899499|Mus musculus domesticus DNA, BAC clone: B6Ng01-085P15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,617,967 - 65,619,101)(37,541,422 - 37,541,776)
sequence
gaattccatgtctcttaaatgagccactttggaaacacagtattggactt
ctggacattgcttttatttctctaaaggggctgtggccagagtatggtgt
ctggccaatgttatgtgtactgcccacattagagatgccctggctctagg
gttgacccagatttgtgattcccaatagacccatcaagtagaatattaat
gatacccagagctaagaacagggttagccaagtgttcagaacttgttcga
aagaagaagaccaagtcctgaggactgtctcactttgaaagttacgggaa
gccccaggagaaatgacattttcttctgtcctcagagaaaatgctcaact
atcaccccagataacccaagtgcatttcaaaagcattgggctttccgaca
caaatctggcagttaaatagatccgaacgggagcctggggaaagtcacta
cactcaagactattggccttaccctcacagtcctaaagtgaccttggagt
taaaacagccagccttcctgctgcccactctgcaggtaagggccaagcca
agcagtcaccgcttgggggccgagcttagcgcttgggggcggagcctccc
agcggcaacgcgctgacgtcacgggcgtgggtcggcccaccgcgtcgtcg
acggggcgcggatcacggccggtggtcgctgtacccggtcggcgtccgct
ctctcggcaattcgtcctccgccccgacgaggcgtccgtggccgggcttc
cgcagtcatgctgcggtcggcgcggctcgcgcttcccctctgagtcccgg
gacggcggcgagcgcggcgaactcgggtcgccatgcctacccgtgagtgt
cgggccaggccgggcgggcgggcagcgcctccaggaagcgccggtccgcc
ctgagttagtttcgcttagacttcagcgtcccgtggcggggagcgcggga
tctctgtgcaccctcgggaaactgaggcggagcgttacgggactgacgcg
cccgcgtgacggcgcggtaacgagacagtgcgacccgggaagcccgggct
gtcactcgccgcgcggtcccactcgactgtgggccaagtcgagcttgcct
ggctattcggagggactta
gaattcagaaaccaggggagagtgaggaacgtcttcagtgccctttgatt
gtgcctcatgtgatgagcaggctaggccaaactgagtcaaggtcaaggct
tttcaacagcgaccacacatggtgtaaagattcagcgcatttcagaagaa
tggagaaggctctgcagttggagtatagtagcccagaggagcagagttct
actggaccatcctgctgtgctccctctaatgcagcatggagttttatagc
tgaacttattcacttttgtctctttcttatctgaaaaactctctgctgtc
ccaggtcatcttcagagagcccctaccaactgagtgatgattacctgata
gcagcaagccaggtttgctccctgcctttctcttgtcatcaaaggaacag
gtagaaaattgagggcactgacctttgatctgtgaaggttcatggaaagt
ttttagctcctgttctatccttaaaagtgaaaaacccaagacataagata
cagtttgctaaacacatgaaactcaagaagaacgaagaccaaagtgtgga
cactttgccccttcttagaattggaaacaatcatccatggaaggaattac
agagacaaagttttggagctgtaacgaaaggatggaccatctagagactg
ccatatccggggatccatcccataatcagcttccaaacgctgacactatt
gcatacactagcaagattttgctgaaaagacccagatatagctgtctctt
ttgagactatgccagggcctagcaaacacagaaagtggatgatcacagtc
agctattggatggatcacagggcccccaatggaggagctagagaaagtac
ccaaggagctaaagggatctgcaaccctataggtgggaacaacattatga
actaccagtaccctggagctcttgacttctagctgcatatgtatcaaaga
tggcctagtcggccatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_65617967_65619101
seq2: B6Ng01-085P15.b_52_1170

seq1  GAATTCCATGTCTCTTAAATGAGCCACTTTGGAAACACAGTATTGGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTCTCTTAAATGAGCCACTTTGGAAACACAGTATTGGACTT  50

seq1  CTGGACATTGCTTTTATTTCTCTAAAGGGGCTGTGGCCAGAGTATGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACATTGCTTTTATTTCTCTAAAGGGGCTGTGGCCAGAGTATGGTGT  100

seq1  CTGGCCAATGTTATGTGTACTGCCCACATTAGAGATGCCCTGGCTCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAATGTTATGTGTACTGCCCACATTAGAGATGCCCTGGCTCTAGG  150

seq1  GTTGACCCAGATTTGTGATTCCCAATAGACCCATCAAGTAGAATATTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCCAGATTTGTGATTCCCAATAGACCCATCAAGTAGAATATTAAT  200

seq1  GATACCCAGAGCTAAGAACAGGGTTAGCCAAGTGTTCAGAACTTGTTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCAGAGCTAAGAACAGGGTTAGCCAAGTGTTCAGAACTTGTTCGA  250

seq1  AAGAAGAAGACCAAGTCCTGAGGACTGTCTCACTTTGAAAGTTACGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGACCAAGTCCTGAGGACTGTCTCACTTTGAAAGTTACGGGAA  300

seq1  GCCCCAGGAGAAATGACATTTTCTTCTGTCCTCAGAGAAAATGCTCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGAGAAATGACATTTTCTTCTGTCCTCAGAGAAAATGCTCAACT  350

seq1  ATCACCCCAGATAACCCAAGTGCATTTCAAAAGCATTGGGCTTTCCGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCCAGATAACCCAAGTGCATTTCAAAAGCATTGGGCTTTCCGACA  400

seq1  CAAATCTGGCAGTTAAATAGATCCGAACGGGAGCCTGGGGAAAGTCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGGCAGTTAAATAGATCCGAACGGGAGCCTGGGGAAAGTCACTA  450

seq1  CACTCAAGACTATTGGCCTTACCCTCACAGTCCTAAAGTGACCTTGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAGACTATTGGCCTTACCCTCACAGTCCTAAAGTGACCTTGGAGT  500

seq1  TAAAACAGCCAGCCTTCCTGCTGCCCACTCTGCAGGTAAGGGCCAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGCCAGCCTTCCTGCTGCCCACTCTGCAGGTAAGGGCCAAGCCA  550

seq1  AGCAGTCACCGCTTGGGGGCCGAGCTTAGCGCTTGGGGGCGGAGCCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCACCGCTTGGGGGCCGAGCTTAGCGCTTGGGGGCGGAGCCTCCC  600

seq1  AGCGGCAACGCGCTGACGTCACGGGCGTGGGTCGGCCCACCGCGTCGTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCAACGCGCTGACGTCACGGGCGTGGGTCGGCCCACCGCGTCGTCG  650

seq1  ACGGGGCGCGGATCACGGCCGGTGGTCGCTGTACCCGGTCGGCGTCCGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGCGCGGATCACGGCCGGTGGTCGCTGTACCCGGTCGGCGTCCGCT  700

seq1  CTCTCGGCAATTCGTCCTCCGCCCCGACGAGGCGTCCGTGGCCGGGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGGCAATTCGTCCTCCGCCCCGACGAGGCGTCCGTGGCCGGGCTTC  750

seq1  CGCAGTCATGCTGCGGTCGGCGCGGCTCGCGCTTCCCCTCTGAGTCCCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTCATGCTGCGGTCGGCGCGGCTCGCGCTTCCCCTCTGAGTCCCGG  800

seq1  GACGGCGGCGAGCGCGGCGAACTCGGGTCGCCATGCCTACCCGTGAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCGGCGAGCGCGGCGAACTCGGGTCGCCATGCCTACCCGTGAGTGT  850

seq1  CGGGCCAGGCCGGGCGGGCGGGCAGCGCCTCCAGGAAGCGCCGGTCCGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCAGGCCGGGCGGGCGGGCAGCGCCTCCAGGAAGCGCCGGTCCGCC  900

seq1  CTGAGTTAGTTTCGCTTAGACTTCAGCGTCCCGTGGGCGGGGAGCGCGGG  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGAGTTAGTTTCGCTTAGACTTCAGCGTCCCGT-GGCGGGGAGCGCGGG  949

seq1  ATCTCTGTGCACCCTCGGGGAAACTGAGGCGGGAGCGTTACGGGAACTGA  1000
      |||||||||||||||| ||||||||||||| ||||||||||||| |||||
seq2  ATCTCTGTGCACCCTC-GGGAAACTGAGGC-GGAGCGTTACGGG-ACTGA  996

seq1  CGGCGGCCCGCGGTGACGGCGCGGTAACGGAGACCAGTGCGACCCGGGAA  1050
      ||   |||||| |||||||||||||||| |||| ||||||||||||||||
seq2  CG--CGCCCGC-GTGACGGCGCGGTAAC-GAGA-CAGTGCGACCCGGGAA  1041

seq1  GCCCGGGCTGGTCCACTCGCCGCGCGGGCCCACTCGACTGTGGCCCCAAG  1100
      ||||||||||   |||||||||||||| ||||||||||||||| ||  | 
seq2  GCCCGGGCTG--TCACTCGCCGCGCGGTCCCACTCGACTGTGGGCC--AA  1087

seq1  GTCGAGGCCTGTGCTGCCTTAGTTTGAGGGACTTA  1135
      ||||||  ||   ||| | || |  ||||||||||
seq2  GTCGAG--CTTGCCTGGC-TATTCGGAGGGACTTA  1119

seq1: chr4_37541422_37541776
seq2: B6Ng01-085P15.g_698_1037 (reverse)

seq1  TGATGGCCGACTAGGCCATCTGCTGCTACATATGCAGCTAG-AGACACGA  49
      |||||||||||||||||||||  || ||||||||||||||| || || ||
seq2  TGATGGCCGACTAGGCCATCT-TTGATACATATGCAGCTAGAAGTCAAGA  49

seq1  GCTCCTGGGGGTACTGGTTAGTTCATATTGTTGTT-CCACCTATAGTGTT  98
      |||||   ||||||||| ||||||||| ||||||| |||||||||| |||
seq2  GCTCC--AGGGTACTGG-TAGTTCATAATGTTGTTCCCACCTATAGGGTT  96

seq1  GCAGACCCCATTAGCTCCTTGGGTACTTTCTCTAGCTCCTAAATTGGGGG  148
      ||||| ||| ||||||||||||||||||||||||||||||  ||||||||
seq2  GCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGG  146

seq1  CCCTGTGATCCAACCAATAGCTGACTGTGAGCATCCAC-TTCTGTGTTTG  197
      |||||||||||| ||||||||||||||||| ||||||| |||||||||||
seq2  CCCTGTGATCCATCCAATAGCTGACTGTGATCATCCACTTTCTGTGTTTG  196

seq1  CTAGGCCCCAGCATAGTTTCACAAGAGACAACTTTATCAGGGTCCTTTCA  247
      ||||||||  ||||||| ||| |||||||| || |||| ||||| |||||
seq2  CTAGGCCCTGGCATAGTCTCAAAAGAGACAGCTATATCTGGGTCTTTTCA  246

seq1  GCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAGGCTAATTA  297
      ||||||||||||||||||||||||| ||||||||||||||| ||| ||||
seq2  GCAAAATCTTGCTAGTGTATGCAATAGTGTCAGCGTTTGGAAGCTGATTA  296

seq1  TGGGATGGATCCCTGGATATGGCAGTCTCTAGATGGGAGTCTCTAGATGG  347
      ||||||||||||| |||||||||              |||||||||||||
seq2  TGGGATGGATCCCCGGATATGGC--------------AGTCTCTAGATGG  332

seq1  TCCATCCT  355
      ||||||||
seq2  TCCATCCT  340