BAC Information

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BAC

Clone NameB6Ng01-086K05
Chromosome15 (Build37)
Map Location 101,534,130 - 101,535,331
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a
Downstream geneKrt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086K05.bB6Ng01-086K05.g
ACCDH899981DH899982
length1,2301,198
definitionDH899981|Mus musculus domesticus DNA, BAC clone: B6Ng01-086K05, 5' end.DH899982|Mus musculus domesticus DNA, BAC clone: B6Ng01-086K05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttgaatcttg
tcgaatgctttttccgtatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgagtatttttgc
atcgatattcataagggaaattggtctgaagttccctatctttgttggat
ctttctgtggtttatgtatcagagtaattgtggcttcttagaatgagttg
ggtagagttccctctacttctattttgtggaatagtttgtgcagaactgg
aattagatattctttgaaggtctggtagaactctgcactaaacccatctg
gtcctgggctttattttggcttggagactattaatgactgcttctatttc
tttaggggatatgggactgtttagatcgttaacttgatcctgatttaact
ttggtacctggtatctgtctagaaatttgtccatttcgtccaggttttcc
agttttgttgagtatagccttttttagaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctcccttttcatttctgattttgctaa
ttaggatgttgtccctgtgccctctagtgagtctagctaagggtttatct
atcttgttgattttctcaaagaaccaactcctcgtttggttaattctttg
aatagttcttcttgtttccacttggttgatttcacccctgagtttgatta
tttcctgccttctactcctcttgggtgaatttgcttccttttttctagag
cttttagatgtgtgtcagctgctagtgtgtgctcttcttggaggcactca
gagctattagtttccctcttagaatgctttcattgtgtcccataggtttg
ggaatgttgtgggcttcatttcattaatccaaaaagtctttaatttcttt
cttattccttcctgaccaggatcattgagaaagagtgtgtcaatttcaat
gattggcttcttattaagtttttattgaagatagcttagtccagggtctg
aaggagcatgggcaattccatttgacgtgagccgttttgacaatatgcca
attgagtctagggtaagagtatcttttagt
gaattcaaagatattttaatgagagacccaaccctacaaacctgctctta
agcagcaatgactctgtcttgtgattcagatcagtgagatctataaagtg
gaacttacaaatgtaacccagagcaacagagatccacgtgtaaagcctgc
cactcgcacaatgtgcagctccagctcaccgaggcctcacagcagcttga
agagcacactgcaagctgacacagagccaggttgcaagccacagcaaaag
acagaagaccatcatggcggtacagttggggaatgacagtcaaggaggga
aagtcaccgccccaccctgaagactgtcctgaacccttttagcatctaga
cccttgcccacctgtgatctgtgggaatttactcaaagctgaacacaggg
aaggtgacaacagttcttccttactcagaggagaacgaagccatcagagc
cgatcgctgtctctcagatgagagagacagatgatggcagagaagtccag
tttgctgggacctaccagaagaaagatcaaaactctactggacagactgc
agagtggctccagggatgggaagcagccatgctttagtgaattttgcctc
taggggctctaccacgtctgtgtagagaagcctggagaagaatcccctct
cacttccagcagggggagtggacactgttttgaatctgccagagttctgt
tcttacctgcctgcccctctctggagctctggacaaaagattcagtcaca
atggattgtttttctgtaatgggatgccccagatgggctcctcaggaggc
agggcatggctatgaatccttccattagtgttctctggaatgagactgta
attatagaacccagcaaaatagaaaggagaaaaaaaagggggggggggct
cagagaaattgacagaagatgctagaactctggtcgtgagatatgaagct
atagaaagtgtgacactcagtgggactggactgagcacagcaggcatcct
agcaggaataatgggcaatgaccacataagtacttcttcaaagaacgtct
tcactctgggtcagaagaaggtggagctgaaaatagttcaatatgggaag
aaacaaggcccactaattccagaactctgtttgcctgttggttggttttt
ttgagcttggctacagagagatcaagaatcctggaagcttcactctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_101534130_101535331
seq2: B6Ng01-086K05.g_70_1267 (reverse)

seq1  ACAGAGTGA--GTTCCAGGATTCTTGAACTCTCTGTGTAGCCAGAGCTCA  48
      |||||||||   |||||||||||||||  ||||| |||||||| ||||||
seq2  ACAGAGTGAAGCTTCCAGGATTCTTGA--TCTCTCTGTAGCCA-AGCTCA  47

seq1  AAAAAACCAACCAACAGACAAACAGAATTTCTGG-ATTAGTGGGCTTTGT  97
      ||||||||||||||||| ||||||| | |||||| |||||||||| ||||
seq2  AAAAAACCAACCAACAGGCAAACAG-AGTTCTGGAATTAGTGGGCCTTGT  96

seq1  TTCTTCCAATATTG-ACTATCT--CGCTCCACTTTCTTCCTGACCCAGAG  144
      ||||||| |||||| ||||| |   ||||||| ||||| |||||||||||
seq2  TTCTTCCCATATTGAACTATTTTCAGCTCCACCTTCTT-CTGACCCAGAG  145

seq1  TGAAGACGTTCTTTGAAGAAGTTACTTATGTGGTCATTGCCCATTATTCC  194
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGAAGACGTTCTTTGAAGAAG-TACTTATGTGGTCATTGCCCATTATTCC  194

seq1  TTGCTAGGATGCCTGCTTGTGCTCAGTCCAGTCCCACTGAGTGTCACACT  244
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  -TGCTAGGATGCCTGC-TGTGCTCAGTCCAGTCCCACTGAGTGTCACACT  242

seq1  TTCTATAGCTTCATATTCTCACGACCAGAGTTCTAGCATCTTCTGTCCAT  294
      ||||||||||||||| |||||||||||||||||||||||||||||| || 
seq2  TTCTATAGCTTCATA-TCTCACGACCAGAGTTCTAGCATCTTCTGT-CAA  290

seq1  TTTCTCCTGAG-CCCCCCCCCCTTTTTTTTCTCCTTTCTATTTTGCTGGG  343
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTCT-CTGAGCCCCCCCCCCCTTTTTTTTCTCCTTTCTATTTTGCTGGG  339

seq1  TTCTATAATTACAGTCTCATTCCAGAGAACACTAATGGAAGGATTCATAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAATTACAGTCTCATTCCAGAGAACACTAATGGAAGGATTCATAG  389

seq1  CCATGCCCTGCCTCCTGAGGAGCCCATCTGGGGCATCCCATTACAGAAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCCTGCCTCCTGAGGAGCCCATCTGGGGCATCCCATTACAGAAAA  439

seq1  ACAATCCATTGTGACTGAATCTTTTGTCCAGAGCTCCAGAGAGGGGCAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCATTGTGACTGAATCTTTTGTCCAGAGCTCCAGAGAGGGGCAGG  489

seq1  CAGGTAAGAACAGAACTCTGGCAGATTCAAAACAGTGTCCACTCCCCCTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGAACAGAACTCTGGCAGATTCAAAACAGTGTCCACTCCCCCTG  539

seq1  CTGGAAGTGAGAGGGGATTCTTCTCCAGGCTTCTCTACACAGACGTGGTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTGAGAGGGGATTCTTCTCCAGGCTTCTCTACACAGACGTGGTA  589

seq1  GAGCCCCTAGAGGCAAAATTCACTAAAGCATGGCTGCTTCCCATCCCTGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCTAGAGGCAAAATTCACTAAAGCATGGCTGCTTCCCATCCCTGG  639

seq1  AGCCACTCTGCAGTCTGTCCAGTAGAGTTTTGATCTTTCTTCTGGTAGGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTCTGCAGTCTGTCCAGTAGAGTTTTGATCTTTCTTCTGGTAGGT  689

seq1  CCCAGCAAACTGGACTTCTCTGCCATCATCTGTCTCTCTCATCTGAGAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAAACTGGACTTCTCTGCCATCATCTGTCTCTCTCATCTGAGAGA  739

seq1  CAGCGATCGGCTCTGATGGCTTCGTTCTCCTCTGAGTAAGGAAGAACTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGATCGGCTCTGATGGCTTCGTTCTCCTCTGAGTAAGGAAGAACTGT  789

seq1  TGTCACCTTCCCTGTGTTCAGCTTTGAGTAAATTCCCACAGATCACAGGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTTCCCTGTGTTCAGCTTTGAGTAAATTCCCACAGATCACAGGT  839

seq1  GGGCAAGGGTCTAGATGCTAAAAGGGTTCAGGACAGTCTTCAGGGTGGGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGGGTCTAGATGCTAAAAGGGTTCAGGACAGTCTTCAGGGTGGGG  889

seq1  CGGTGACTTTCCCTCCTTGACTGTCATTCCCCAACTGTACCGCCATGATG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGACTTTCCCTCCTTGACTGTCATTCCCCAACTGTACCGCCATGATG  939

seq1  GTCTTCTGTCTTTTGCTGTGGCTTGCAACCTGGCTCTGTGTCAGCTTGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGTCTTTTGCTGTGGCTTGCAACCTGGCTCTGTGTCAGCTTGCA  989

seq1  GTGTGCTCTTCAAGCTGCTGTGAGGCCTCGGTGAGCTGGAGCTGCACATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTCTTCAAGCTGCTGTGAGGCCTCGGTGAGCTGGAGCTGCACATT  1039

seq1  GTGCGAGTGGCAGGCTTTACACGTGGATCTCTGTTGCTCTGGGTTACATT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGAGTGGCAGGCTTTACACGTGGATCTCTGTTGCTCTGGGTTACATT  1089

seq1  TGTAAGTTCCACTTTATAGATCTCACTGATCTGAATCACAAGACAGAGTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTTCCACTTTATAGATCTCACTGATCTGAATCACAAGACAGAGTC  1139

seq1  ATTGCTGCTTAAGAGCAGGTTTGTAGGGTTGGGTCTCTCATTAAAATATC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGCTTAAGAGCAGGTTTGTAGGGTTGGGTCTCTCATTAAAATATC  1189

seq1  TTTGAATTC  1202
      |||||||||
seq2  TTTGAATTC  1198