BAC Information

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BAC

Clone NameB6Ng01-087C21
Chromosome15 (Build37)
Map Location 18,155,131 - 18,272,042
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040162, LOC666835
Downstream geneLOC666839, Cdh10, EG666857
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087C21.bB6Ng01-087C21.g
ACCDH900381DH900382
length7071,152
definitionDH900381|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C21, 5' end.DH900382|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,271,336 - 18,272,042)(18,155,131 - 18,156,291)
sequence
gaattccttctatttaaaattattactttggaaattcttttctttataaa
tgttttgtttgctgggctattgcctgggtgttaacttcatgtaagccttc
aaggttacttgttttcctgtaacttgatgacagtcttaaaaagggaaaac
ggattacctcaactaattaaaaagggcaataaaatcgcattttgtattag
tttaaaaacgatctaacatataagtggttcttggaaattgtaggtgatgc
aacatatttctggaagcatcatgattaatttcatacatatttgtgtatct
ctctagataggtgcctatgtagtttactaaccctgacagtttgtattaca
tactacctccaggtagcttggtaatttttctttattgttcaacagtttca
gttctacttccttgattaaggacattcaaattgctcttcgggttcagatc
agtaaaactctttgggtggcttttttaagaaagtaaaaagcaaatttcct
tcccatcttatttttggtagaacttgacgtagctaaagaaaaaaaaaccc
tcaaaactaactaaactataaagacacacacgcacacacacacgcacaca
cacacacacacacacacacacacacacacacacacacacatatatatatg
tcacacatatatgtgacttatatatgtgtgtatatatgtgtgtgtgtgtg
tgtgtgt
gaattccattgtcttcaggagtgacatacaagatacttacatcctggtac
taaagaaaggaataatattctcaggagtgctttagaaacaaagcctaatg
tcagcgaagacaaaataggatttataatagacttctgaagtcataatact
caagcttagcacatgtaacctacacattttgcagtgcataattaattttc
aatagctgttgtcattaaaataatgtgaataattacttgcccacccacaa
actattttatatatcttcaacactttaatctaaacgcttaaatgtcttaa
aaataagacacatgttacatctcattttaaaaacactgaattacatgtca
gtaaaggaagcaattagatttgataatgaaaataattaattcaacataga
gtacaagtttgccaacagaaaacacagaaataatttgattcatgccttcc
tcagctgtcttcagagatgcttcctcttgcagcagagataacaaatacag
agagcccatggccaggtattatttagaaaagttagagacattgaaacact
ctgccccaaaagggatgtctccctcaaatctctcccttcagagcacagga
tactacctccccctcgccttccacaacctggcagaagaggatgcaaaagg
accctaagagccagagaggattgaagacacaaaagaaggccttgtaaaac
caacatgagtaacacttaaatgaactcacaaagatggagccagtaagcac
agggcttgcattagtcagcatcacgtcctctgcctacatagtccggcttc
aagtttagtgtttttagctttctatggtttccctgcaaatgtgtggattt
cttggggcttcacctttcactgttctccatctgtttgtttgtcttgtcca
actctatagtgatagcatatatatatattcccgagaaccctgtatttttc
taaagagaaaagaatgggagtggaaactgtaattgagtatgttagataag
aaaagatctattttgaataaatttaaacactatcaaagcagtgaaagtat
acataaaaatagcatggattatagttatgccacaggtaaatatgaaatat
taacttcatagagaaaaatgacaactgagttggagttaatcttatggatg
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_18271336_18272042
seq2: B6Ng01-087C21.b_45_751 (reverse)

seq1  ACACACACACACACACACACATATATACACACATATATAAGTCACATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACATATATACACACATATATAAGTCACATATA  50

seq1  TGTGTGACATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  100

seq1  GTGTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTCTTTATAGTTTAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTCTTTATAGTTTAGTTA  150

seq1  GTTTTGAGGGTTTTTTTTTCTTTAGCTACGTCAAGTTCTACCAAAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGGGTTTTTTTTTCTTTAGCTACGTCAAGTTCTACCAAAAATAA  200

seq1  GATGGGAAGGAAATTTGCTTTTTACTTTCTTAAAAAAGCCACCCAAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAAGGAAATTTGCTTTTTACTTTCTTAAAAAAGCCACCCAAAGAG  250

seq1  TTTTACTGATCTGAACCCGAAGAGCAATTTGAATGTCCTTAATCAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGATCTGAACCCGAAGAGCAATTTGAATGTCCTTAATCAAGGAA  300

seq1  GTAGAACTGAAACTGTTGAACAATAAAGAAAAATTACCAAGCTACCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTGAAACTGTTGAACAATAAAGAAAAATTACCAAGCTACCTGGA  350

seq1  GGTAGTATGTAATACAAACTGTCAGGGTTAGTAAACTACATAGGCACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTATGTAATACAAACTGTCAGGGTTAGTAAACTACATAGGCACCTA  400

seq1  TCTAGAGAGATACACAAATATGTATGAAATTAATCATGATGCTTCCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGAGATACACAAATATGTATGAAATTAATCATGATGCTTCCAGAA  450

seq1  ATATGTTGCATCACCTACAATTTCCAAGAACCACTTATATGTTAGATCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGCATCACCTACAATTTCCAAGAACCACTTATATGTTAGATCGT  500

seq1  TTTTAAACTAATACAAAATGCGATTTTATTGCCCTTTTTAATTAGTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACTAATACAAAATGCGATTTTATTGCCCTTTTTAATTAGTTGAG  550

seq1  GTAATCCGTTTTCCCTTTTTAAGACTGTCATCAAGTTACAGGAAAACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCGTTTTCCCTTTTTAAGACTGTCATCAAGTTACAGGAAAACAAG  600

seq1  TAACCTTGAAGGCTTACATGAAGTTAACACCCAGGCAATAGCCCAGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTGAAGGCTTACATGAAGTTAACACCCAGGCAATAGCCCAGCAAA  650

seq1  CAAAACATTTATAAAGAAAAGAATTTCCAAAGTAATAATTTTAAATAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATTTATAAAGAAAAGAATTTCCAAAGTAATAATTTTAAATAGAA  700

seq1  GGAATTC  707
      |||||||
seq2  GGAATTC  707

seq1: chr15_18155131_18156291
seq2: B6Ng01-087C21.g_66_1217

seq1  GAATTCCATTGTCTTCAGGAGTGACATACAAGATACTTACATCCTGGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGTCTTCAGGAGTGACATACAAGATACTTACATCCTGGTAC  50

seq1  TAAAGAAAGGAATAATATTCTCAGGAGTGCTTTAGAAACAAAGCCTAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAGGAATAATATTCTCAGGAGTGCTTTAGAAACAAAGCCTAATG  100

seq1  TCAGCGAAGACAAAATAGGATTTATAATAGACTTCTGAAGTCATAATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGAAGACAAAATAGGATTTATAATAGACTTCTGAAGTCATAATACT  150

seq1  CAAGCTTAGCACATGTAACCTACACATTTTGCAGTGCATAATTAATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTAGCACATGTAACCTACACATTTTGCAGTGCATAATTAATTTTC  200

seq1  AATAGCTGTTGTCATTAAAATAATGTGAATAATTACTTGCCCACCCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTGTTGTCATTAAAATAATGTGAATAATTACTTGCCCACCCACAA  250

seq1  ACTATTTTATATATCTTCAACACTTTAATCTAAACGCTTAAATGTCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTATATATCTTCAACACTTTAATCTAAACGCTTAAATGTCTTAA  300

seq1  AAATAAGACACATGTTACATCTCATTTTAAAAACACTGAATTACATGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGACACATGTTACATCTCATTTTAAAAACACTGAATTACATGTCA  350

seq1  GTAAAGGAAGCAATTAGATTTGATAATGAAAATAATTAATTCAACATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGAAGCAATTAGATTTGATAATGAAAATAATTAATTCAACATAGA  400

seq1  GTACAAGTTTGCCAACAGAAAACACAGAAATAATTTGATTCATGCCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGTTTGCCAACAGAAAACACAGAAATAATTTGATTCATGCCTTCC  450

seq1  TCAGCTGTCTTCAGAGATGCTTCCTCTTGCAGCAGAGATAACAAATACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTCTTCAGAGATGCTTCCTCTTGCAGCAGAGATAACAAATACAG  500

seq1  AGAGCCCATGGCCAGGTATTATTTAGAAAAGTTAGAGACATTGAAACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCATGGCCAGGTATTATTTAGAAAAGTTAGAGACATTGAAACACT  550

seq1  CTGCCCCAAAAGGGATGTCTCCCTCAAATCTCTCCCTTCAGAGCACAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCAAAAGGGATGTCTCCCTCAAATCTCTCCCTTCAGAGCACAGGA  600

seq1  TACTACCTCCCCCTCGCCTTCCACAACCTGGCAGAAGAGGATGCAAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCTCCCCCTCGCCTTCCACAACCTGGCAGAAGAGGATGCAAAAGG  650

seq1  ACCCTAAGAGCCAGAGAGGATTGAAGACACAAAAGAAGGCCTTGTAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAAGAGCCAGAGAGGATTGAAGACACAAAAGAAGGCCTTGTAAAAC  700

seq1  CAACATGAGTAACACTTAAATGAACTCACAAAGATGGAGCCAGTAAGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGAGTAACACTTAAATGAACTCACAAAGATGGAGCCAGTAAGCAC  750

seq1  AGGGCTTGCATTAGTCAGCATCACGTCCTCTGCCTACATAGTCCGGCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTGCATTAGTCAGCATCACGTCCTCTGCCTACATAGTCCGGCTTC  800

seq1  AAGTTTAGTGTTTTTAGCTTTCTATGGTTTCCCTGCAAATGTGTGGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAGTGTTTTTAGCTTTCTATGGTTTCCCTGCAAATGTGTGGATTT  850

seq1  CTT-GGGCTTCACCTTTCACTGTTCTCCATCTGTTTGTTTGTCTTGTCCA  899
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGCTTCACCTTTCACTGTTCTCCATCTGTTTGTTTGTCTTGTCCA  900

seq1  ACTCTATAGTGATAGCATATATATATATTCCCGAGAACCCTGTATTTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATAGTGATAGCATATATATATATTCCCGAGAACCCTGTATTTTTC  950

seq1  TAAAGAGAAAAAGAATGGGAGTGGAAACTGTAATTGAAGTATGTTAGATA  999
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  TAAAGAG-AAAAGAATGGGAGTGGAAACTGTAATTG-AGTATGTTAGATA  998

seq1  AGAAAAGGATCTATTTTGAATAAAATTTAAACACTAATCAAAGCAGTGAA  1049
      |||||| |||||||||||||| ||||||||||||| |||||||||||| |
seq2  AGAAAA-GATCTATTTTGAAT-AAATTTAAACACT-ATCAAAGCAGTG-A  1044

seq1  AAGTATACATAAAAATTAGCATGGATTATAGTTATGCCAACAGTAAATAT  1099
      ||||||||||||||| |||||||||||||||||||||||   ||||||||
seq2  AAGTATACATAAAAA-TAGCATGGATTATAGTTATGCCACAGGTAAATAT  1093

seq1  GAAATATT-ACTTCATAGAGAAAACATGAACAACTGAAGTTGGAAGGTTA  1148
      |||||||| ||||||||||||||| ||| ||||||| |||||||  ||||
seq2  GAAATATTAACTTCATAGAGAAAA-ATG-ACAACTG-AGTTGGA--GTTA  1138

seq1  ATCTAAT-GATGAA  1161
      |||| || ||||||
seq2  ATCTTATGGATGAA  1152