BAC Information

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BAC

Clone NameB6Ng01-087P21
Chromosome15 (Build37)5 (Build37)
Map Location 30,523,861 - 30,525,003112,270,605 - 112,270,793
singlet/doubletsingletsinglet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087P21.bB6Ng01-087P21.g
ACCDH900968DH900969
length1,130170
definitionDH900968|Mus musculus domesticus DNA, BAC clone: B6Ng01-087P21, 5' end.DH900969|Mus musculus domesticus DNA, BAC clone: B6Ng01-087P21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,523,861 - 30,525,003)(112,270,605 - 112,270,793)
sequence
gaattccatgcaggaccttgaagtcacatccataaaccaggaatcagaca
atgaatgacaaacacatgcaagtggtcatctcattttctccattttatgt
agtccaagatccacagtccagggaatggccccatcacaaataagctgagt
ctttctgcatcaattaatgtaatgaagacaatcttcacagacgagatcta
cattctgtcgagtggacagttgtctccggttatcacagtatttggtttaa
cttgacacagggtcattgaaggtatgttagagtgaaatcccactggaatg
attatagagtccctcaatgtgagtggtgttatgatatgcaaagagatttc
tgacactgactaatgcagtgatgcaatgtagagagggaagagttccatca
aggaggacactaagaaagacaaggcaaagaccttcttctgaagcccttgg
agggagtgcagcctggctacctgatgccttcagacctgcaacctgaagaa
ttctgagaacatgcatgcctgtggttatgctgctccaaggacactcaaac
tcttctgttttgcctctgagtgtaagcagaactcacacactcatttggag
atggatgggccttctctgccgcaggcagaccccagcatgtttagccactc
ttccctgatttatataatgaatcccacatcactgagcaccaggggaggat
ctgtgaacacacaaatgctttgcatgcatctgatctggcttgggaagaac
tggggttacgtatgtttagtgagcatttgaatgaacacttaaaaaattat
ggatccataataagcttgatagcttttttccagtgtttgttttttgtttt
tgtttttgtttggttttttgtttgtttgcttgcttgcttgcttttgtcag
ttagggctggacatgtcaaaaaggattaccttttttaagtcaatgatttg
ggggtcaaccaatctttaaaaatggaaaatgcttgtgcatttgtcacata
aatctcaaattcaataattatttaagtgatcagttcttccaataggccta
gcatctattagctttactatcactacacagcagagtcactgagaagttgt
ctctatgaggaactcccatagattgatctg
tggcagatggattcctaggcaggtaccccctcctctgtctctgtctcctt
ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgt
gtatgtgtgtgtgtgtatgtgtgtgtgtgtatgtgtgtgtgtgtatgtgt
gtgtgtgcaagtgtgtgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_30523861_30525003
seq2: B6Ng01-087P21.b_46_1175

seq1  GAATTCCATGCAGGACCTTGAAGTCACATCCATAAACCAGGAATCAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCAGGACCTTGAAGTCACATCCATAAACCAGGAATCAGACA  50

seq1  ATGAATGACAAACACATGCAAGTGGTCATCTCATTTTCTCCATTTTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGACAAACACATGCAAGTGGTCATCTCATTTTCTCCATTTTATGT  100

seq1  AGTCCAAGATCCACAGTCCAGGGAATGGCCCCATCACAAATAAGCTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAGATCCACAGTCCAGGGAATGGCCCCATCACAAATAAGCTGAGT  150

seq1  CTTTCTGCATCAATTAATGTAATGAAGACAATCTTCACAGACGAGATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCATCAATTAATGTAATGAAGACAATCTTCACAGACGAGATCTA  200

seq1  CATTCTGTCGAGTGGACAGTTGTCTCCGGTTATCACAGTATTTGGTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTCGAGTGGACAGTTGTCTCCGGTTATCACAGTATTTGGTTTAA  250

seq1  CTTGACACAGGGTCATTGAAGGTATGTTAGAGTGAAATCCCACTGGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACACAGGGTCATTGAAGGTATGTTAGAGTGAAATCCCACTGGAATG  300

seq1  ATTATAGAGTCCCTCAATGTGAGTGGTGTTATGATATGCAAAGAGATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGAGTCCCTCAATGTGAGTGGTGTTATGATATGCAAAGAGATTTC  350

seq1  TGACACTGACTAATGCAGTGATGCAATGTAGAGAGGGAAGAGTTCCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGACTAATGCAGTGATGCAATGTAGAGAGGGAAGAGTTCCATCA  400

seq1  AGGAGGACACTAAGAAAGACAAGGCAAAGACCTTCTTCTGAAGCCCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGACACTAAGAAAGACAAGGCAAAGACCTTCTTCTGAAGCCCTTGG  450

seq1  AGGGAGTGCAGCCTGGCTACCTGATGCCTTCAGACCTGCAACCTGAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGCAGCCTGGCTACCTGATGCCTTCAGACCTGCAACCTGAAGAA  500

seq1  TTCTGAGAACATGCATGCCTGTGGTTATGCTGCTCCAAGGACACTCAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGAACATGCATGCCTGTGGTTATGCTGCTCCAAGGACACTCAAAC  550

seq1  TCTTCTGTTTTGCCTCTGAGTGTAAGCAGAACTCACACACTCATTTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTTTTGCCTCTGAGTGTAAGCAGAACTCACACACTCATTTGGAG  600

seq1  ATGGATGGGCCTTCTCTGCCGCAGGCAGACCCCAGCATGTTTAGCCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGGGCCTTCTCTGCCGCAGGCAGACCCCAGCATGTTTAGCCACTC  650

seq1  TTCCCTGATTTATATAATGAATCCCACATCACTGAGCACCAGGGGAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGATTTATATAATGAATCCCACATCACTGAGCACCAGGGGAGGAT  700

seq1  CTGTGAACACACAAATGCTTTGCATGCATCTGATCTGGCTTGGGAAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAACACACAAATGCTTTGCATGCATCTGATCTGGCTTGGGAAGAAC  750

seq1  TGGGGTTACGTATGTTTAGTGAGCATTTGAATGAACACTTAAAAAATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTACGTATGTTTAGTGAGCATTTGAATGAACACTTAAAAAATTAT  800

seq1  GGATCCATAATAAGCTTGATAGCTTTTTTCCAGTGTTTGTTTTTTGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCATAATAAGCTTGATAGCTTTTTTCCAGTGTTTGTTTTTTGTTTT  850

seq1  TGTTTTTGTTTGGTTTTTTGTTTGTTTGCTTGCTTGCTTGCTTTTGTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTGGTTTTTTGTTTGTTTGCTTGCTTGCTTGCTTTTGTCAG  900

seq1  TTAGGGCTGGACATGTCAAAAAGGATTACCTTTTTTAAGTCAATGATTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCTGGACATGTCAAAAAGGATTACCTTTTTTAAGTCAATGATTTG  950

seq1  GGGGTCAACCAATCTTTAAAAATGGAAAATGCTTTGTGCATTTGTCACAT  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGGTCAACCAATCTTTAAAAATGGAAAATGC-TTGTGCATTTGTCACAT  999

seq1  AAATCTCAAATTTCAATAATTTATTTAAGTGATCAGTTCTTCC-ATA-GC  1048
      |||||||||| |||||||| ||||||||||||||||||||||| ||| ||
seq2  AAATCTCAAA-TTCAATAA-TTATTTAAGTGATCAGTTCTTCCAATAGGC  1047

seq1  CTAGCATCCTATTAGCTTTAACTATCAACTACACAGCCAAGAGTCAACTG  1098
      ||||||| ||||||||||| |||||| ||||||||||  |||||| ||||
seq2  CTAGCAT-CTATTAGCTTT-ACTATC-ACTACACAGC--AGAGTC-ACTG  1091

seq1  AGAAGGTTGTCTCTATTGAGGGACTCCCCAAACCAGATTGATCTG  1143
      |||| |||||||||| ||||| ||||||      |||||||||||
seq2  AGAA-GTTGTCTCTA-TGAGGAACTCCC----ATAGATTGATCTG  1130

seq1: chr5_112270605_112270793
seq2: B6Ng01-087P21.g_124_244 (reverse)

seq1  AGACACACATTTACAAACACACACAGGCATACACATACATGCACACAGAC  50
                                                    ||||
seq2  ----------------------------------------------AGAC  4

seq1  ACAGACATACAGACACACACACATACACACACAGAGACACACATATACAA  100
      ||| || | |  ||||||||||||||||||      ||||||||| ||| 
seq2  ACACACTTGC--ACACACACACATACACAC------ACACACATACACAC  46

seq1  ACACAAACATAAGCGCACACACACACACACATACACAAAAACACAGACAC  150
      |||||          || ||||||||||||||||||    ||||| ||||
seq2  ACACA----------CATACACACACACACATACAC----ACACATACAC  82

seq1  ACACACACACACACACACACACACACACACACACACAGA  189
      |||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACAGA  121