BAC Information

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BAC

Clone NameB6Ng01-088I20
Chromosome15 (Build37)
Map Location 10,595,518 - 10,771,906
singlet/doubletdoublet
Overlap geneRai14
Upstream geneC230086A09Rik, Prlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579
Downstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772, Npr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088I20.bB6Ng01-088I20.g
ACCDH901373DH901374
length1,1621,130
definitionDH901373|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I20, 5' end.DH901374|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,595,518 - 10,596,713)(10,770,762 - 10,771,906)
sequence
gaattctgcagctgagaacttcaggccatgcctgggcagggtctgtacac
agtagcgtttccatactgcacactcctggtttgattgacattctacaaca
gaaagttcgttactattccacagcatcggattttgtgtctgggagatctt
ggttcctttcctgcccaataactacatctagttcaacattttgtatgacg
tatgatcaagacctcaacatcattatgaccttgactttagcaaggtgtga
aaccacttgactatgcaaatcaaacaagaggagtggtctgccttctttcc
tgcttgccgtgccagtcacaggcacaaacaatgacttcctccgctttcca
atcccagagagacaacaccacatttatacggtttctgctcttaaaatttg
atattactttaccgatatcatctctgttgagtacatgttagaggcttttc
taagccaggtgtgacagtatgtgcacaggcctcctgcagaggctggaggt
caccctaagccaagtagtgagtttcaaaccagcttaggctatggaatgag
tgtctttttccaaaaaccaaataagatagagaaacggctccgtggttaag
ggtgcttcctgctcttcccaggactcacagtggaaggcttacaactgcct
gccattccagttctaaggggtctagtgtcttgtctggtctctgcaggcat
cttcctatacatagcatacttataccaatacaaacacagggatatacaca
cacagataggcagacaccctccccccacaaataatatataataataataa
taataataatataataataatagtcatcatagtagtaatgggccagagca
tttgccaccctagtagaggaccaagctcaattcccagtacctgtgcacag
gctcaaatccatctgtcactccattttcataaccctcgtatccccttttt
ggcctcctcagtcacagacacccacatgacacacaaacatacatggagca
aaaccttcatacatataaaataaaagtttaaaatctttaaatagatgaat
attacattaatcagacgaatgctcttctgaacaaaagttggaacgagcta
acaaggtctagcatgcaaccttcaataaacatctgtgtaaagctttataa
taacacttcaca
gaattccttcaaaaagtagatactcgaagaaaacgtgcaatctgtctgta
gaattttttctcaagtcagctgactctcaaaggctgttagctcaaagtga
tgtacaggcgatgccacttgatgcagatagttgtccccaagtaggacata
tatttaggatggtacccctctgtaccctaggactttaagacatgggacca
ctggtctttaccaacaaaccacactgttttcttagtttcttgaactgtag
aagaagtgataccagccattaaaactaatgtgaatgcagtctacacacca
tgccgggagagtactccacacaagagctgataatgtggccctaaacctca
gagcacaaaaccttccagaacctctgacaggatgctgacttctcctaacc
tgatgtggatcggggatatcatcctctgcagctaggttcagggacatgga
tttgccctacaaatagtatatggggaacagcacacagtatgcagctgggt
tcaatcttggccaatgataagctgtgagatcttgagaagattccttaata
tatctgagtttctgtttcctcatgtggacttttttcctttatgttcctac
tgtaaaaactatagatgttcattttacccagaatccttagcccccccctc
ccctcccccatggcggctcaatgcatttgttattaatgtctgttgccaat
atgactgtgaagaacatgagctttctcagcagcccccacgatacatttca
caactctgccttagacacgttgtctaatctaccttgtgcctcagtttccc
cacccctaaattagggctgctaatagaaacttccctgtagcactgtcacg
agaactgcctgagatcatgtatttaaggtgctaattagaccggggcctat
cacatgctgagattcagtaaaagcttgccattgttttcctaggtttaata
tactcagccctgtcaacacatgaggttattatacttattacgtgctttct
atggctgaagtgatgtgctcactctggggaatacaagaaaattaagcttg
gagagcactagaagacctatccaccttgtgacttgttgttttactctggc
ttggagcatctcatcttcactcgacaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_10595518_10596713
seq2: B6Ng01-088I20.b_48_1209

seq1  GAATTCTGCAGCTGAGAACTTCAGGCCATGCCTGGGCAGGGTCTGTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGCTGAGAACTTCAGGCCATGCCTGGGCAGGGTCTGTACAC  50

seq1  AGTAGCGTTTCCATACTGCACACTCCTGGTTTGATTGACATTCTACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCGTTTCCATACTGCACACTCCTGGTTTGATTGACATTCTACAACA  100

seq1  GAAAGTTCGTTACTATTCCACAGCATCGGATTTTGTGTCTGGGAGATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCGTTACTATTCCACAGCATCGGATTTTGTGTCTGGGAGATCTT  150

seq1  GGTTCCTTTCCTGCCCAATAACTACATCTAGTTCAACATTTTGTATGACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTTCCTGCCCAATAACTACATCTAGTTCAACATTTTGTATGACG  200

seq1  TATGATCAAGACCTCAACATCATTATGACCTTGACTTTAGCAAGGTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCAAGACCTCAACATCATTATGACCTTGACTTTAGCAAGGTGTGA  250

seq1  AACCACTTGACTATGCAAATCAAACAAGAGGAGTGGTCTGCCTTCTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTTGACTATGCAAATCAAACAAGAGGAGTGGTCTGCCTTCTTTCC  300

seq1  TGCTTGCCGTGCCAGTCACAGGCACAAACAATGACTTCCTCCGCTTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCCGTGCCAGTCACAGGCACAAACAATGACTTCCTCCGCTTTCCA  350

seq1  ATCCCAGAGAGACAACACCACATTTATACGGTTTCTGCTCTTAAAATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGAGAGACAACACCACATTTATACGGTTTCTGCTCTTAAAATTTG  400

seq1  ATATTACTTTACCGATATCATCTCTGTTGAGTACATGTTAGAGGCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTTTACCGATATCATCTCTGTTGAGTACATGTTAGAGGCTTTTC  450

seq1  TAAGCCAGGTGTGACAGTATGTGCACAGGCCTCCTGCAGAGGCTGGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGGTGTGACAGTATGTGCACAGGCCTCCTGCAGAGGCTGGAGGT  500

seq1  CACCCTAAGCCAAGTAGTGAGTTTCAAACCAGCTTAGGCTATGGAATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTAAGCCAAGTAGTGAGTTTCAAACCAGCTTAGGCTATGGAATGAG  550

seq1  TGTCTTTTTCCAAAAACCAAATAAGATAGAGAAACGGCTCCGTGGTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTTCCAAAAACCAAATAAGATAGAGAAACGGCTCCGTGGTTAAG  600

seq1  GGTGCTTCCTGCTCTTCCCAGGACTCACAGTGGAAGGCTTACAACTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCCTGCTCTTCCCAGGACTCACAGTGGAAGGCTTACAACTGCCT  650

seq1  GCCATTCCAGTTCTAAGGGGTCTAGTGTCTTGTCTGGTCTCTGCAGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCAGTTCTAAGGGGTCTAGTGTCTTGTCTGGTCTCTGCAGGCAT  700

seq1  CTTCCTATACATAGCATACTTATACCAATACAAACACAGGGATATACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTATACATAGCATACTTATACCAATACAAACACAGGGATATACACA  750

seq1  CACAGATAGGCAGACACCCTCCCCCCACAAAATAATAATAATAATAATAA  800
      |||||||||||||||||||||||||||| ||||||||   ||||||||||
seq2  CACAGATAGGCAGACACCCTCCCCCCAC-AAATAATA--TATAATAATAA  797

seq1  TAATAATAATAATAATAATAATAATAGTCATCATAGTAGTAATGGGCCAG  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAAT-ATAATAATAATAGTCATCATAGTAGTAATGGGCCAG  846

seq1  AGCATTTGCCACCCTAGTAGAGGACCAAGGCTCAATTCCCAGTACCTGTG  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCATTTGCCACCCTAGTAGAGGACCAA-GCTCAATTCCCAGTACCTGTG  895

seq1  CACAGGCTCAAATCCATCTGTCACTCCATTTTCATAACCCCTCGTATCCC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CACAGGCTCAAATCCATCTGTCACTCCATTTTCATAA-CCCTCGTATCCC  944

seq1  CTTTTTTGGCCTCCTCAGTCACCAGACACCCACATGACACACAAACATAC  1000
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  C-TTTTTGGCCTCCTCAGTCA-CAGACACCCACATGACACACAAACATAC  992

seq1  ATGGAGGCAAAACACTCATACATATAAAATAAAAGTTTAAAAATCTTTAA  1050
      ||||| |||||||  ||||||||||||||||||||||| ||||||||| |
seq2  ATGGA-GCAAAACCTTCATACATATAAAATAAAAGTTT-AAAATCTTT-A  1039

seq1  AATAGATGAATTAATTACATTAACCAGACAGAAGTGCTCTTCTGAGAACA  1100
      |||||||||||  |||||||||| ||||| ||| |||||||||  |||||
seq2  AATAGATGAAT--ATTACATTAATCAGAC-GAA-TGCTCTTCT--GAACA  1083

seq1  ACAGGTTAGAGAACAGAAGCTAACCAAAGTCTAGCATGCACACCTTCAAA  1150
      | | ||| ||    |  |||||| ||| |||||||||||| ||||||  |
seq2  A-AAGTTGGA----ACGAGCTAA-CAAGGTCTAGCATGCA-ACCTTC--A  1124

seq1  ATAAAAACAATCTGGTTGTAAAGCTTTTATAATTTAACACTTCACA  1196
      |||||    |||||  |||||||| |||||||  ||||||||||||
seq2  ATAAA---CATCTG--TGTAAAGC-TTTATAA--TAACACTTCACA  1162

seq1: chr15_10770762_10771906
seq2: B6Ng01-088I20.g_68_1197 (reverse)

seq1  CCTTTGTGCTCGA-TGAAGATGTAGATGCTCAAGGCTCAGAGTTAAAAAC  49
      ||||||   |||| |||||||| |||||||| | || |||||| |||   
seq2  CCTTTG---TCGAGTGAAGATG-AGATGCTCCAAGC-CAGAGTAAAA---  42

seq1  CCAACAAGTCACAAAGTTGGATAAGGTCTTCTAGTGCTCTTCCAAGCCTA  99
       ||||||||||| ||| ||||| |||||||||||||||| ||||||| ||
seq2  -CAACAAGTCAC-AAGGTGGAT-AGGTCTTCTAGTGCTC-TCCAAGCTTA  88

seq1  ATTTTCTTGTATTCCCCAGAGGTTGGAGCACATCACCTCAGCCATAGAAA  149
      |||||||||||||||||||||    ||||||||||| |||||||||||||
seq2  ATTTTCTTGTATTCCCCAGAG---TGAGCACATCACTTCAGCCATAGAAA  135

seq1  GCACGTAATAAGTATTAATAACCTCATGTGTTGACAGGGCTGAGTATATT  199
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  GCACGTAATAAGTA-TAATAACCTCATGTGTTGACAGGGCTGAGTATA-T  183

seq1  TAAACCTAGGAAAACAATGGCAAGCTTTTACTGAATCTCAGCATGTGATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTAGGAAAACAATGGCAAGCTTTTACTGAATCTCAGCATGTGATA  233

seq1  GGCCCCGGTCTAATTAGCACCTTAAATACATGATCTCAGGCAGTTCTCGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCGGTCTAATTAGCACCTTAAATACATGATCTCAGGCAGTTCTCGT  283

seq1  GACAGTGCTACAGGGAAGTTTCTATTAGCAGCCCTAATTTAGGGGTGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGCTACAGGGAAGTTTCTATTAGCAGCCCTAATTTAGGGGTGGGG  333

seq1  AAACTGAGGCACAAGGTAGATTAGACAACGTGTCTAAGGCAGAGTTGTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGGCACAAGGTAGATTAGACAACGTGTCTAAGGCAGAGTTGTGA  383

seq1  AATGTATCGTGGGGGCTGCTGAG-AAGCTCATGTTCTTCACAGTCATATT  448
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATGTATCGTGGGGGCTGCTGAGAAAGCTCATGTTCTTCACAGTCATATT  433

seq1  GGCAACAGACATTAATAACAAATGCATTGAGCCGCCATGGGGGAGGGGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAGACATTAATAACAAATGCATTGAGCCGCCATGGGGGAGGGGAG  483

seq1  GGGGGGGCTAAGGATTCTGGGTAAAATGAACATCTATAGTTTTTACAGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGCTAAGGATTCTGGGTAAAATGAACATCTATAGTTTTTACAGTA  533

seq1  GGAACATAAAGGAAAAAAGTCCACATGAGGAAACAGAAACTCAGATATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATAAAGGAAAAAAGTCCACATGAGGAAACAGAAACTCAGATATAT  583

seq1  TAAGGAATCTTCTCAAGATCTCACAGCTTATCATTGGCCAAGATTGAACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATCTTCTCAAGATCTCACAGCTTATCATTGGCCAAGATTGAACC  633

seq1  CAGCTGCATACTGTGTGCTGTTCCCCATATACTATTTGTAGGGCAAATCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCATACTGTGTGCTGTTCCCCATATACTATTTGTAGGGCAAATCC  683

seq1  ATGTCCCTGAACCTAGCTGCAGAGGATGATATCCCCGATCCACATCAGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTGAACCTAGCTGCAGAGGATGATATCCCCGATCCACATCAGGT  733

seq1  TAGGAGAAGTCAGCATCCTGTCAGAGGTTCTGGAAGGTTTTGTGCTCTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAAGTCAGCATCCTGTCAGAGGTTCTGGAAGGTTTTGTGCTCTGA  783

seq1  GGTTTAGGGCCACATTATCAGCTCTTGTGTGGAGTACTCTCCCGGCATGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGGGCCACATTATCAGCTCTTGTGTGGAGTACTCTCCCGGCATGG  833

seq1  TGTGTAGACTGCATTCACATTAGTTTTAATGGCTGGTATCACTTCTTCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGACTGCATTCACATTAGTTTTAATGGCTGGTATCACTTCTTCTA  883

seq1  CAGTTCAAGAAACTAAGAAAACAGTGTGGTTTGTTGGTAAAGACCAGTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAAGAAACTAAGAAAACAGTGTGGTTTGTTGGTAAAGACCAGTGG  933

seq1  TCCCATGTCTTAAAGTCCTAGGGTACAGAGGGGTACCATCCTAAATATAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGTCTTAAAGTCCTAGGGTACAGAGGGGTACCATCCTAAATATAT  983

seq1  GTCCTACTTGGGGACAACTATCTGCATCAAGTGGCATCGCCTGTACATCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACTTGGGGACAACTATCTGCATCAAGTGGCATCGCCTGTACATCA  1033

seq1  CTTTGAGCTAACAGCCTTTGAGAGTCAGCTGACTTGAGAAAAAATTCTAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGCTAACAGCCTTTGAGAGTCAGCTGACTTGAGAAAAAATTCTAC  1083

seq1  AGACAGATTGCACGTTTTCTTCGAGTATCTACTTTTTGAAGGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATTGCACGTTTTCTTCGAGTATCTACTTTTTGAAGGAATTC  1130