BAC Information

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BAC

Clone NameB6Ng01-089A01
Chromosome15 (Build37)
Map Location 57,038,489 - 57,131,971
singlet/doubletdoublet
Overlap geneBC026439
Upstream geneHas2, EG594843, LOC435442, LOC100040067, LOC100039984
Downstream geneZhx2, Derl1, Wdr67, BC030396, 9130401M01Rik, Zhx1, Atad2, LOC665244, 2410187C16Rik, Fbxo32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089A01.bB6Ng01-089A01.g
ACCDH901701DH901702
length1,0901,105
definitionDH901701|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A01, 5' end.DH901702|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,130,872 - 57,131,971)(57,038,489 - 57,039,605)
sequence
gaattcagttgggctgacatgcagtgagttgcttgtttgttttggaaagt
acatcttcaaagatttataagaggagtggatagcagatatttggtactta
gctaaaataaactctgagtgatattaacattaggttttattttgaaatga
taaactgctaccttttatctagctgatttcatatgtaactgagtaaggct
atggaatactgttcctccatgtgatttttctccctttgcaaaataaaatt
tctctctttgattttagtgtctgtgttcaatagtggctcatctggatcat
ggaagattttaacatctctgataacttctaagaacaataatagatttcaa
atggattctctggataaaacagattcctagcactgttataaaagttacag
gcacttggtagtggagaaattgtgaaatgtgagttaataatgaagcaata
tccttggtatgacatgaaacctaatggcacagcacgtatctctggaaatc
gtcaatatataaatagtcgttgagttcattctactctgtctttctgatgt
tcagggaagggaagacactgttctttatgtactcatcatgacttgacttc
cagcacattttccctatattttatctcccttcccctatctatgtaatgtt
catattcactgatttgtgaaacacagggttcctcacaatgaagtaagcac
atttttttttttttgtttttgaaattgatagcaatttaagagttgaaaga
aatgacatctttctcttctttttcctcctcctcctcctcccccccccctc
tttctccgagtcatcaaacatatgtgttaactggggtgattaatcatagc
acaatggtagtcactctacttaaatacactcatttataaatctgcttcta
gagttgaattttctggaaagctaagatttgttttagtgttggtatggtca
tcagtaacctatggtttatagatttaaatatgctacaaatttatttcact
catgatttattagagaaaatatttgggatgaagttgtggtcactatattt
tttaattttataaacattggtcaagtgtaaacctctcagc
gaattctctctgatgacaaatgaactaggaaccaatctgagtgtagcaga
atatcgttaggaataattttctaccctagttctctgggctatccagcctc
tgggtcatggctctccaaaaatgtcagcttgccattgtccatctttagag
ccatgccccctagatgcatagatattcctgctactgaattggaaccatac
atcacctattgcccacctttcctcttcccctcttctacatttcaaagata
tatgtgagtctatggtatattgaagaagaatggactctcttgctttgcga
ttcacataggttgtaaaacgcacaaaccatctcttttctttagacactcc
aatactgtcaggaagacaagaagagaatattcagcattctctactaacat
atctgtagtctgcatgtcctgataagtcacacatggaaactgtagaactg
aatacatttcagtgaacatcttgttgtatctacatgtttgagtctgtttc
ttgtatgaaaatgccaggggtggggggactatctgtgatctcagatttaa
atagagcaagatttctaaaatacatttaactgtgagcattggaagaaaga
gggggaataaaagtcaaaattcctttcagctgtaaatacattctgttctt
tgtaagaagtctatgagattatgcatcaaacttcaatgagaccatttact
accaccccataaaagagaatgatgaagttcccttccagataaatatctcc
ctaatgtaaacccaaactaattcctttacaatatgtgtgttttttctcta
ttgcctacttaaatacaatcttatttcctgtcaattctgactactggcat
cattaatgtagttctgaaaattacttacctagattcatgtctttaacttg
tgtggctttgggaaattgagaaatgacttagagcactgactactcttcca
gagtctgagttcattccacagccacatgatggctcacaacatctgtaagg
gatcaatgccctcttctggtgttctgagacagcacagtgacagtggactc
ccgtaaaataaaataaattttatgtctatgtcccaagctggatcctgtgc
ccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_57130872_57131971
seq2: B6Ng01-089A01.b_43_1132 (reverse)

seq1  GCTGAAGGAGG-TTACACTTGACCATTGTTATAAAAATTATAAAAATTAT  49
      |||||  |||| ||||||||||||| ||||   |||||  |||||| |||
seq2  GCTGA--GAGGTTTACACTTGACCAATGTTTATAAAAT--TAAAAAATAT  46

seq1  AGTTGACCCACAAACCTCATTCC-AATATTTTCTCCTAATTAAATCATGA  98
      || ||| |||| ||| |||| || |||||||||| |||| ||||||||||
seq2  AG-TGA-CCAC-AACTTCATCCCAAATATTTTCT-CTAA-TAAATCATGA  91

seq1  GGTGAAATAAATTTGTAGCATATTTAAATCTTATAAACCATAGGTTTACT  148
       ||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  -GTGAAATAAATTTGTAGCATATTTAAATC-TATAAACCATAGG-TTACT  138

seq1  GATGACCATACCAACACTAAAACAAATCTTAGCTTTTCCAGAAAATTCAA  198
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GATGACCATACCAACACTAAAACAAATCTTAGC-TTTCCAGAAAATTCAA  187

seq1  CTCTAGAAGCAGATTTATAAATGAGTGTATTTAAGTAGAGTGACTACCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAAGCAGATTTATAAATGAGTGTATTTAAGTAGAGTGACTACCAT  237

seq1  TGTGCTATGATTAATCACCCCAGTTAACACATATGTTTGATGACTCGGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTATGATTAATCACCCCAGTTAACACATATGTTTGATGACTCGGAG  287

seq1  AAAGAGGGGGGGGGGAGGAGGAGGAGGAGGAAAAAGAAGAGAAAGATGTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGGGGGGGGAGGAGGAGGAGGAGGAAAAAGAAGAGAAAGATGTC  337

seq1  ATTTCTTTCAACTCTTAAATTGCTATCAATTTCAAAAAC-AAAAAAAAAA  397
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTTCTTTCAACTCTTAAATTGCTATCAATTTCAAAAACAAAAAAAAAAA  387

seq1  AATGTGCTTACTTCATTGTGAGGAACCCTGTGTTTCACAAATCAGTGAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTTACTTCATTGTGAGGAACCCTGTGTTTCACAAATCAGTGAAT  437

seq1  ATGAACATTACATAGATAGGGGAAGGGAGATAAAATATAGGGAAAATGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATTACATAGATAGGGGAAGGGAGATAAAATATAGGGAAAATGTG  487

seq1  CTGGAAGTCAAGTCATGATGAGTACATAAAGAACAGTGTCTTCCCTTCCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTCAAGTCATGATGAGTACATAAAGAACAGTGTCTTCCCTTCCC  537

seq1  TGAACATCAGAAAGACAGAGTAGAATGAACTCAACGACTATTTATATATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATCAGAAAGACAGAGTAGAATGAACTCAACGACTATTTATATATT  587

seq1  GACGATTTCCAGAGATACGTGCTGTGCCATTAGGTTTCATGTCATACCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATTTCCAGAGATACGTGCTGTGCCATTAGGTTTCATGTCATACCAA  637

seq1  GGATATTGCTTCATTATTAACTCACATTTCACAATTTCTCCACTACCAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTGCTTCATTATTAACTCACATTTCACAATTTCTCCACTACCAAG  687

seq1  TGCCTGTAACTTTTATAACAGTGCTAGGAATCTGTTTTATCCAGAGAATC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAACTTTTATAACAGTGCTAGGAATCTGTTTTATCCAGAGAATC  737

seq1  CATTTGAAATCTATTATTGTTCTTAGAAGTTATCAGAGATGTTAAAATCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAATCTATTATTGTTCTTAGAAGTTATCAGAGATGTTAAAATCT  787

seq1  TCCATGATCCAGATGAGCCACTATTGAACACAGACACTAAAATCAAAGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGATCCAGATGAGCCACTATTGAACACAGACACTAAAATCAAAGAG  837

seq1  AGAAATTTTATTTTGCAAAGGGAGAAAAATCACATGGAGGAACAGTATTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTTATTTTGCAAAGGGAGAAAAATCACATGGAGGAACAGTATTC  887

seq1  CATAGCCTTACTCAGTTACATATGAAATCAGCTAGATAAAAGGTAGCAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCTTACTCAGTTACATATGAAATCAGCTAGATAAAAGGTAGCAGT  937

seq1  TTATCATTTCAAAATAAAACCTAATGTTAATATCACTCAGAGTTTATTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTTCAAAATAAAACCTAATGTTAATATCACTCAGAGTTTATTTT  987

seq1  AGCTAAGTACCAAATATCTGCTATCCACTCCTCTTATAAATCTTTGAAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTACCAAATATCTGCTATCCACTCCTCTTATAAATCTTTGAAGA  1037

seq1  TGTACTTTCCAAAACAAACAAGCAACTCACTGCATGTCAGCCCAACTGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTCCAAAACAAACAAGCAACTCACTGCATGTCAGCCCAACTGAA  1087

seq1  TTC  1100
      |||
seq2  TTC  1090

seq1: chr15_57038489_57039605
seq2: B6Ng01-089A01.g_70_1174

seq1  GAATTCTCTCTGATGACAAATGAACTAGGAACCAATCTGAGTGTAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGATGACAAATGAACTAGGAACCAATCTGAGTGTAGCAGA  50

seq1  ATATCGTTAGGAATAATTTTCTACCCTAGTTCTCTGGGCTATCCAGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGTTAGGAATAATTTTCTACCCTAGTTCTCTGGGCTATCCAGCCTC  100

seq1  TGGGTCATGGCTCTCCAAAAATGTCAGCTTGCCATTGTCCATCTTTAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCATGGCTCTCCAAAAATGTCAGCTTGCCATTGTCCATCTTTAGAG  150

seq1  CCATGCCCCCTAGATGCATAGATATTCCTGCTACTGAATTGGAACCATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCCCCTAGATGCATAGATATTCCTGCTACTGAATTGGAACCATAC  200

seq1  ATCACCTATTGCCCACCTTTCCTCTTCCCCTCTTCTACATTTCAAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTATTGCCCACCTTTCCTCTTCCCCTCTTCTACATTTCAAAGATA  250

seq1  TATGTGAGTCTATGGTATATTGAAGAAGAATGGACTCTCTTGCTTTGCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGTCTATGGTATATTGAAGAAGAATGGACTCTCTTGCTTTGCGA  300

seq1  TTCACATAGGTTGTAAAACGCACAAACCATCTCTTTTCTTTAGACACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATAGGTTGTAAAACGCACAAACCATCTCTTTTCTTTAGACACTCC  350

seq1  AATACTGTCAGGAAGACAAGAAGAGAATATTCAGCATTCTCTACTAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTCAGGAAGACAAGAAGAGAATATTCAGCATTCTCTACTAACAT  400

seq1  ATCTGTAGTCTGCATGTCCTGATAAGTCACACATGGAAACTGTAGAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAGTCTGCATGTCCTGATAAGTCACACATGGAAACTGTAGAACTG  450

seq1  AATACATTTCAGTGAACATCTTGTTGTATCTACATGTTTGAGTCTGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTTCAGTGAACATCTTGTTGTATCTACATGTTTGAGTCTGTTTC  500

seq1  TTGTATGAAAATGCCAGGGGTGGGGGGACTATCTGTGATCTCAGATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGAAAATGCCAGGGGTGGGGGGACTATCTGTGATCTCAGATTTAA  550

seq1  ATAGAGCAAGATTTCTAAAATACATTTAACTGTGAGCATTGGAAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCAAGATTTCTAAAATACATTTAACTGTGAGCATTGGAAGAAAGA  600

seq1  GGGGGAATAAAAGTCAAAATTCCTTTCAGCTGTAAATACATTCTGTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAATAAAAGTCAAAATTCCTTTCAGCTGTAAATACATTCTGTTCTT  650

seq1  TGTAAGAAGTCTATGAGATTATGCATCAAACTTCAATGAGACCATTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAGTCTATGAGATTATGCATCAAACTTCAATGAGACCATTTACT  700

seq1  ACCACCCCATAAAAGAGAATGATGAAGTTCCCTTCCAGATAAATATCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCCATAAAAGAGAATGATGAAGTTCCCTTCCAGATAAATATCTCC  750

seq1  CTAATGTAAACCCAAACTAATTCCTTTACAATATGTGTGTTTTTTCTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTAAACCCAAACTAATTCCTTTACAATATGTGTGTTTTTTCTCTA  800

seq1  TTGCCTACTTAAATACAATCTTATTTCCTGTCAATTCTGACTACTGGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTACTTAAATACAATCTTATTTCCTGTCAATTCTGACTACTGGCAT  850

seq1  CATTAATGTAGTTCTGAAAATTACTTACCTAGATTCATGTCTTTAACTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATGTAGTTCTGAAAATTACTTACCTAGATTCATGTCTTTAACTTG  900

seq1  TGTGGCTTTGGGAAATTGAGAAATGACTTAAGAGCACTGACTACTCTTCC  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTGGCTTTGGGAAATTGAGAAATGACTT-AGAGCACTGACTACTCTTCC  949

seq1  AGAAGTTCTGAGTTCAATTCCAACAGCCACATGATGGCTCACAACCATCT  1000
      |||   ||||||||| ||||| |||||||||||||||||||||| |||||
seq2  AGA--GTCTGAGTTC-ATTCC-ACAGCCACATGATGGCTCACAA-CATCT  994

seq1  GTAAAGGGATCCAATGCCCTCTTCTGGTGTTCTGAAGACAGCAACAGTGA  1050
      || ||||||| ||||||||||||||||||||||| ||||||| |||||||
seq2  GT-AAGGGAT-CAATGCCCTCTTCTGGTGTTCTG-AGACAGC-ACAGTGA  1040

seq1  CAGTGGACTCACGTAAAATAAAAATAAATTTTATGGTCTATGCCCAGAGC  1100
      |||||||||| |||||||| |||||||||||||| ||||||| ||  |||
seq2  CAGTGGACTCCCGTAAAAT-AAAATAAATTTTAT-GTCTATGTCCCAAGC  1088

seq1  T-GATCCTGTGCCACAGC  1117
      | ||||||||||| ||||
seq2  TGGATCCTGTGCC-CAGC  1105