BAC Information

Click to search

BAC

Clone NameB6Ng01-089D01
Chromosome15 (Build37)
Map Location 16,966,941 - 17,165,440
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040087, LOC624183, LOC100040119, Cdh9
Downstream geneLOC100040162, LOC666835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089D01.bB6Ng01-089D01.g
ACCDH901831DH901832
length1,171775
definitionDH901831|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D01, 5' end.DH901832|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,966,941 - 16,968,116)(17,164,667 - 17,165,440)
sequence
gaattctctttaatatcctttagcacagaatttagcttcattccactttc
tggtaaccttactctttgtacaatacattttgtatttttcctttctctca
ttgctatttttcattaaaatactcttcataagagtgaactttagtaacca
cacaacagaatttataccaggctattttgagacttcctttgtcaaagcaa
ttaacttaaatctcttcaccttggcttcaggtagattctttggacaatgg
caaaaaacagtcacattcattaccaaagttatcataaaaagagtctctgg
gccacatactaaaagtcttttctgaaacctctagacctaggttctcacag
ttcaaaacacactgaggaactctgtcttccatgattctactagtatgacc
attaagccctagtaaagcattcagctgctttgcaaagtccccaaaccctg
gatcttgtgaaagaacagtaaatacttttaactgctaagccctctctcca
tcaccatatgtagggttcaaaatacttctatgcacatgaagtagataact
gttttcatgattttaaaaaaaaaacttatattatattttaattgattagt
tgtgattaaaaatatttctgtttcattactatacttgtattatgctcaca
aatatgtcatttttaagtttaattttaaaaatagttcaatttcatttatt
gaattttataagctgatatagtaagacttcaaaaccatattttctatcaa
caaatggttcatccagacaaaaactgaacagtgaaattctagaacttact
ggcattataaaccaaataacctaacagatattttcagaacaaatatcacc
caaattcataaaagaaacacttctacagcataaatcacatattgaccctc
atgctctgatggcaggagactttatacccccaaattaacatagacagatc
atcgagacaaaactacacagagaaattctgagcaaaacaagacatatagt
attatagagtatttcacccagacaaagaaaatatctattttctcagcacc
tctggatcttcttcaatattgatcacctatttgggaagcaaggtaggttt
caacgaattcaaaaaaaggttgttctttcaaaacttgaataattgtcttg
ccatatctgttgggaattgca
gaattcataaaccgccttataagaactttttaagttttgggggataaaat
gctagaggatcctcacccattcaaagcaaacaattttctacaaaagaaac
agtcctacttttgtttctttaatagcttgggagtagtaataatgtgcctt
tctgctctaagcacgttgaatagaaggaaatgttggaaaaaccaaatgaa
aaaaatggaaagtttttaacattcccatctgtcagaaatcacaagaagga
atttggtaataataaaagcagagactcttctaataatcaggatgtaatga
ctgctcctcttattttcacttttaaggagaacaggactaaaatagaaata
ttttaaatatcaaagccccaagcactagcaccttcagtagtacactgcct
ccaggaaaaaccagactaattagttatccattaccatgtaatggcaaaac
aacattaagctgatgttcttgatatttgttatacacaataattacattta
catatttgtgaattggagtaactgctactgtagctagagagcattacaca
tacccaagtgcttgtccagtttcctgaatctctacattcactaactcatt
gttacagggatactccagcagttatataccaaataatgagtataatgagt
ccagcaaaatgaacaccccaatatccgacaacaaatccttctaaattggt
gtcttagacccttatgggacatttggagactggggcctgaagaaaattaa
taatggtaaaatgagattgcacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16966941_16968116
seq2: B6Ng01-089D01.b_52_1215

seq1  CTTTAATATCCTTTAGCACAGAATTTAGCTTCATTCCACTTTCTGGTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATATCCTTTAGCACAGAATTTAGCTTCATTCCACTTTCTGGTAAC  50

seq1  CTTACTCTTTGTACAATACATTTTGTATTTTTCCTTTCTCTCATTGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCTTTGTACAATACATTTTGTATTTTTCCTTTCTCTCATTGCTAT  100

seq1  TTTTCATTAAAATACTCTTCATAAGAGTGAACTTTAGTAACCACACAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTAAAATACTCTTCATAAGAGTGAACTTTAGTAACCACACAACA  150

seq1  GAATTTATACCAGGCTATTTTGAGACTTCCTTTGTCAAAGCAATTAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATACCAGGCTATTTTGAGACTTCCTTTGTCAAAGCAATTAACTT  200

seq1  AAATCTCTTCACCTTGGCTTCAGGTAGATTCTTTGGACAATGGCAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTTCACCTTGGCTTCAGGTAGATTCTTTGGACAATGGCAAAAAA  250

seq1  CAGTCACATTCATTACCAAAGTTATCATAAAAAGAGTCTCTGGGCCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACATTCATTACCAAAGTTATCATAAAAAGAGTCTCTGGGCCACAT  300

seq1  ACTAAAAGTCTTTTCTGAAACCTCTAGACCTAGGTTCTCACAGTTCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGTCTTTTCTGAAACCTCTAGACCTAGGTTCTCACAGTTCAAAA  350

seq1  CACACTGAGGAACTCTGTCTTCCATGATTCTACTAGTATGACCATTAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGAGGAACTCTGTCTTCCATGATTCTACTAGTATGACCATTAAGC  400

seq1  CCTAGTAAAGCATTCAGCTGCTTTGCAAAGTCCCCAAACCCTGGATCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTAAAGCATTCAGCTGCTTTGCAAAGTCCCCAAACCCTGGATCTTG  450

seq1  TGAAAGAACAGTAAATACTTTTAACTGCTAAGCCCTCTCTCCATCACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAACAGTAAATACTTTTAACTGCTAAGCCCTCTCTCCATCACCAT  500

seq1  ATGTAGGGTTCAAAATACTTCTATGCACATGAAGTAGATAACTGTTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGGTTCAAAATACTTCTATGCACATGAAGTAGATAACTGTTTTCA  550

seq1  TGATTTTAAAAAAAAAACTTATATTATATTTTAATTGATTAGTTGTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAAAAAAAAAACTTATATTATATTTTAATTGATTAGTTGTGATT  600

seq1  AAAAATATTTCTGTTTCATTACTATACTTGTATTATGCTCACAAATATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTCTGTTTCATTACTATACTTGTATTATGCTCACAAATATGT  650

seq1  CATTTTTAAGTTTAATTTTAAAAATAGTTCAATTTCATTTATTGAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAGTTTAATTTTAAAAATAGTTCAATTTCATTTATTGAATTTT  700

seq1  ATAAGCTGATATAGTAAGACTTCAAAACCATATTTTCTATCAACAAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTGATATAGTAAGACTTCAAAACCATATTTTCTATCAACAAATGG  750

seq1  TTCATCCAGACAAAAACTGAACAGTGAAATTCTAGAACTTACTGGCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAGACAAAAACTGAACAGTGAAATTCTAGAACTTACTGGCATTA  800

seq1  TAAACCAAATAACCTAACAGATATTTTCAGAACAAATATCACCCAAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAAATAACCTAACAGATATTTTCAGAACAAATATCACCCAAATTC  850

seq1  ATAAAAGAAACACTTCTACAGCATAAATCACATATTGACCCTCATGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAACACTTCTACAGCATAAATCACATATTGACCCTCATGCTCT  900

seq1  GATGGCAGGAGACTTTAATACCCCCAAATTAACAATAGACAGATCATCGA  950
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  GATGGCAGGAGACTTT-ATACCCCCAAATTAAC-ATAGACAGATCATCGA  948

seq1  GACAAAAACTACACAGAGAAATTCTGAAGCAAAACAAAGAACATAATAGG  1000
      ||| |||||||||||||||||||||| ||||||||||   |||| ||| |
seq2  GAC-AAAACTACACAGAGAAATTCTG-AGCAAAACAA--GACAT-ATA-G  992

seq1  TATTTATAGAGTATTTCACCCAAGACAAAAAGAAAATATCTA-TTTCTCA  1049
      || |||||||||||||||||| ||||  |||||||||||||| |||||||
seq2  TA-TTATAGAGTATTTCACCC-AGAC--AAAGAAAATATCTATTTTCTCA  1038

seq1  GCACCTCCTGGATCTTCCTTCAATATTGATCACCTATTT-GGAAGCAAGG  1098
      |||||| ||||||||| |||||||||||||||||||||| ||||||||||
seq2  GCACCT-CTGGATCTT-CTTCAATATTGATCACCTATTTGGGAAGCAAGG  1086

seq1  TAAGTTTCAACAGATACAAAAAAAAGTTG-TCTTTCAAAAACTATGAATT  1147
      || ||||||||  || |||||||| |||| |||||| |||||| ||||| 
seq2  TAGGTTTCAACGAATTCAAAAAAAGGTTGTTCTTTC-AAAACT-TGAATA  1134

seq1  ATTGTCTTG-CATATTTTGTGGGAATTGCA  1176
      ||||||||| ||||| |  |||||||||||
seq2  ATTGTCTTGCCATATCTGTTGGGAATTGCA  1164

seq1: chr15_17164667_17165440
seq2: B6Ng01-089D01.g_67_841 (reverse)

seq1  TATGTGCAATCTCA-TTTAACATTATTTATTTTCTTCCAGGCCCAGTCTC  49
      |||||||||||||| |||| ||||||| |||||||||  | |||||||||
seq2  TATGTGCAATCTCATTTTACCATTATTAATTTTCTTCAGGCCCCAGTCTC  50

seq1  CAAATGTCCCATAAGGGTCTAAGACACCAATTTAGAAGGATTTGTTTGTC  99
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAATGTCCCATAAGGGTCTAAGACACCAATTTAGAAGGATTTG-TTGTC  99

seq1  -GATTTTGGGGTGTTCATTTTGCTGGACTCATTATACTCATTATTTGGTA  148
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTGGGGTGTTCATTTTGCTGGACTCATTATACTCATTATTTGGTA  149

seq1  TATAACTGCTGGAGTATCCCTGTAACAATGAGTTAGTGAATGTAGAGATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGCTGGAGTATCCCTGTAACAATGAGTTAGTGAATGTAGAGATT  199

seq1  CAGGAAACTGGACAAGCACTTGGGTATGTGTAATGCTCTCTAGCTACAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACTGGACAAGCACTTGGGTATGTGTAATGCTCTCTAGCTACAGT  249

seq1  AGCAGTTACTCCAATTCACAAATATGTAAATGTAATTATTGTGTATAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTACTCCAATTCACAAATATGTAAATGTAATTATTGTGTATAACA  299

seq1  AATATCAAGAACATCAGCTTAATGTTGTTTTGCCATTACATGGTAATGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAAGAACATCAGCTTAATGTTGTTTTGCCATTACATGGTAATGGA  349

seq1  TAACTAATTAGTCTGGTTTTTCCTGGAGGCAGTGTACTACTGAAGGTGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAATTAGTCTGGTTTTTCCTGGAGGCAGTGTACTACTGAAGGTGCT  399

seq1  AGTGCTTGGGGCTTTGATATTTAAAATATTTCTATTTTAGTCCTGTTCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGGGGCTTTGATATTTAAAATATTTCTATTTTAGTCCTGTTCTC  449

seq1  CTTAAAAGTGAAAATAAGAGGAGCAGTCATTACATCCTGATTATTAGAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGTGAAAATAAGAGGAGCAGTCATTACATCCTGATTATTAGAAG  499

seq1  AGTCTCTGCTTTTATTATTACCAAATTCCTTCTTGTGATTTCTGACAGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGCTTTTATTATTACCAAATTCCTTCTTGTGATTTCTGACAGAT  549

seq1  GGGAATGTTAAAAACTTTCCATTTTTTTCATTTGGTTTTTCCAACATTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTTAAAAACTTTCCATTTTTTTCATTTGGTTTTTCCAACATTTC  599

seq1  CTTCTATTCAACGTGCTTAGAGCAGAAAGGCACATTATTACTACTCCCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATTCAACGTGCTTAGAGCAGAAAGGCACATTATTACTACTCCCAA  649

seq1  GCTATTAAAGAAACAAAAGTAGGACTGTTTCTTTTGTAGAAAATTGTTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTAAAGAAACAAAAGTAGGACTGTTTCTTTTGTAGAAAATTGTTTG  699

seq1  CTTTGAATGGGTGAGGAACCACAAGCATTTTATCCCCCAAAACTTAAAAA  748
      ||||||||||||||||| || | |||||||||||||||||||||||||||
seq2  CTTTGAATGGGTGAGGATCCTCTAGCATTTTATCCCCCAAAACTTAAAAA  749

seq1  GTTCTTATAAGGAGGATTATGAATTC  774
      |||||||||||| || ||||||||||
seq2  GTTCTTATAAGGCGGTTTATGAATTC  775