BAC Information

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BAC

Clone NameB6Ng01-089D19
Chromosome15 (Build37)
Map Location 5,794,626 - 5,941,800
singlet/doubletdoublet
Overlap geneLOC666319, LOC100039358
Upstream geneLOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291
Downstream geneLOC666323, Dab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089D19.bB6Ng01-089D19.g
ACCDH901867DH901868
length1,197893
definitionDH901867|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D19, 5' end.DH901868|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,794,626 - 5,795,333)(5,941,211 - 5,941,800)
sequence
gaattcattctctatgcagccatcagctgtcaataccctctgagctaaag
gtgaaacttcttacaccctctctgatccacgctggaatattggctgattt
gatcttgtgaaattcttgcatatgcagtcatagcctctgtaaattcatgt
gtgtcatggtcccaatgcatggtagtgtcaagaacagcaaataatagttt
tgctgcagatgtttgttacctgaagttattacaatttttctaacacactt
cactttcaaaataatctgagaaccttggactaagggaatgtgatgtatat
accccatttagagtaaacacaacactacacactcttatttatctctgcac
attgaccagttgtgggtctcggtgttaattgttgtctattgcaaaatgaa
gcttttttgatgattgaatgactaatctatgggtaacaacattcagaatc
aatttaattctgcccatttagcagaattacaggaataggttctccactag
agcctatggcctagccagccatagattttcatcatagttaacagtaccag
gccttacgttctatcttttggaccagaatttaaatccaatcaaaaaatga
ttgtttattcttataatttgtgtgctactattgtaccagagggcacgtct
tgctaagctaattatacttctcagagttcccagataggtaatactgttaa
tatttttctctttcggtagcatacataagaccttttagcactatgaaagc
tagttattacggatcaagtgtcaagacatgtgatgaattcagctgtaggg
tcttaccaccatattctgcaatttttaggaatcaataggacccctctgac
taacaactcataaaagacttcaattctacacaagacctatagtcaattaa
gaaatactgagcatgatagaaatggtcttctcagagagaccacaccaatt
ggtttctggtactactggttaggcccagaacatacgttcagaacatacca
cctcagagtctctctcacacacacacagccatatgtaagaaacaacacac
tgagaggttctctctctcacacaataaacacacatatgatgttgttcgtg
tggttacattgatgtaccatggtggcaagcctttaaccttaagagcgtaa
ctgtagtagcctctggatggccaatccgtaatgtgtgtgtttgtgta
gaattcagtaaggcttgcttccccatcatctcctactaataccatcttta
cttctgtttctaggtctcaatatttatttactacattacagtgatgctgg
aggcctgctctggattagggaaaacacaggtgtgaattgggacaaagctt
tagacaaaggccaaatactgatgatctccagtcttttaactctctaacta
tactggaaggtagaagctgatggcttctggagacttaacacactgttgct
tattctgtggctgcccctccccttgggattaacacctgcagcttaatagc
aggggtctgagaggattaagtaaagaagtttttattcttttcctctttca
ggtcctggcccaggcaggagtgaggcaaggagttccctaaatttttgtct
gataaagacagcttcagaaagtcaacttgcagaaacaggcactcactttt
aaaagaggatgaatccttatttctgaggggaaaaaaaggaaaactgcttt
ctatccctaaataaaagaagacttgtgctaagaagaacctgtccctgtct
gttcttcttattcttaacttttatattttctcaggatacatggtcacatg
gttttgcaagcatctagtttttaaaagtttcatgataaattcaaaacaaa
aatttaaattataaattgaataagtagtcacagtagaaatgtttacatat
atttccatagagactatgtaattaaaccttaactgtcactagcttcacag
gttcattaaaagtttcaaacaataattcttatgtcataagttagcaaggt
tttgtcaagaggcatatcatctgccttgggtctcattagttttgaagttt
tgtatagaaaattcagtcaacaattttattttctggccttgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_5794626_5795333
seq2: B6Ng01-089D19.b_567_1241

seq1  AGATTTTCATCATAGTTAACAGTACCAGGCCTTACGTTCTATCTTTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCATCATAGTTAACAGTACCAGGCCTTACGTTCTATCTTTTGGA  50

seq1  CCAGAATTTAAATCCAATCAAAAAATGATTGTTTATTCTTATAATTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTTAAATCCAATCAAAAAATGATTGTTTATTCTTATAATTTGTG  100

seq1  TGCTACTATTGTACCAGAGGGCACGTCTTGCTAAGCTAATTATACTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTATTGTACCAGAGGGCACGTCTTGCTAAGCTAATTATACTTCTC  150

seq1  AGAGTTCCCAGATAGGTAATACTGTTAATATTTTTCTCTTTCGGTAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCCCAGATAGGTAATACTGTTAATATTTTTCTCTTTCGGTAGCAT  200

seq1  ACATAAGACCTTTTAGCACTATGAAAGCTAGTTATTACGGATCAAGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGACCTTTTAGCACTATGAAAGCTAGTTATTACGGATCAAGTGTC  250

seq1  AAGACATGTGATGAATTCAGCTGTAGGGTCTTACCACCATATTCTGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGTGATGAATTCAGCTGTAGGGTCTTACCACCATATTCTGCAAT  300

seq1  TTTTAGGAATCAATAGGACCCCTCTGACTAACAACTCATAAAAAGACTTC  350
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTTAGGAATCAATAGGACCCCTCTGACTAACAACTCAT-AAAAGACTTC  349

seq1  AATTCTACACAAAGACCTATAGTCAATTAAGAAATACTGAGCATGATAGA  400
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATTCTACAC-AAGACCTATAGTCAATTAAGAAATACTGAGCATGATAGA  398

seq1  AATGGTCTTCTCCAGAGAAGACCACACCAATTGGTTTTCTGGTACTAACT  450
      ||||||||||| ||||| |||||||||||||||| ||||||||||| |||
seq2  AATGGTCTTCT-CAGAG-AGACCACACCAATTGG-TTTCTGGTACT-ACT  444

seq1  GGTTAGGCCCCAGAACATACGTTCAAGAAACATACACACTCAGAAGGTCT  500
      ||||||| |||||||||||||||||   |||||||   ||||||  ||||
seq2  GGTTAGG-CCCAGAACATACGTTCA--GAACATACCACCTCAGA--GTCT  489

seq1  CTCTCACACACACACAAGCACATATTGTAAGAAACATACACACTGAGAAG  550
      ||||||||||||||| ||| |||| ||||||||||| ||||||||||| |
seq2  CTCTCACACACACAC-AGC-CATA-TGTAAGAAACA-ACACACTGAGAGG  535

seq1  TTCTCTCTCTCACACATATACACACACATATGTGTGTGTGTGTGTGTGTG  600
      |||||||||||||||| ||| |||||||||||    ||| |||  |||||
seq2  TTCTCTCTCTCACACA-ATAAACACACATATG---ATGT-TGTTCGTGTG  580

seq1  TATACATTTGTTGTATACATTTGTTGGCCAGGGCCTTAAAACTCTAGAGA  650
        |||| ||| ||||  ||  || |||| |  ||||| || ||  |||| 
seq2  GTTACA-TTGATGTA-CCA--TGGTGGCAA--GCCTTTAACCTTAAGAG-  623

seq1  AGCTGTAGCTGTAAGGATGCTTTCTGAATTGCCAATCATGTATGTGTGTG  700
          ||| |||||  |  ||  |||| || |||||||    |||||||||
seq2  ---CGTAACTGTA--GTAGC-CTCTGGATGGCCAATCCGTAATGTGTGTG  667

seq1  TTTGTGTA  708
      ||||||||
seq2  TTTGTGTA  675

seq1: chr15_5941211_5941800
seq2: B6Ng01-089D19.g_66_655 (reverse)

seq1  TGTATCCTGAGAAAATATAAAAGTTAAGAATAAGAAGAACAGACAGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCTGAGAAAATATAAAAGTTAAGAATAAGAAGAACAGACAGGGAC  50

seq1  AGGTTCTTCTTAGCACAAGTCTTCTTTTATTTAGGGATAGAAAGCAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTTCTTAGCACAAGTCTTCTTTTATTTAGGGATAGAAAGCAGTTT  100

seq1  TCCTTTTTTTCCCCTCAGAAATAAGGATTCATCCTCTTTTAAAAGTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTTTCCCCTCAGAAATAAGGATTCATCCTCTTTTAAAAGTGAGT  150

seq1  GCCTGTTTCTGCAAGTTGACTTTCTGAAGCTGTCTTTATCAGACAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTCTGCAAGTTGACTTTCTGAAGCTGTCTTTATCAGACAAAAAT  200

seq1  TTAGGGAACTCCTTGCCTCACTCCTGCCTGGGCCAGGACCTGAAAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAACTCCTTGCCTCACTCCTGCCTGGGCCAGGACCTGAAAGAGGA  250

seq1  AAAGAATAAAAACTTCTTTACTTAATCCTCTCAGACCCCTGCTATTAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAAAAACTTCTTTACTTAATCCTCTCAGACCCCTGCTATTAAGC  300

seq1  TGCAGGTGTTAATCCCAAGGGGAGGGGCAGCCACAGAATAAGCAACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGTTAATCCCAAGGGGAGGGGCAGCCACAGAATAAGCAACAGTG  350

seq1  TGTTAAGTCTCCAGAAGCCATCAGCTTCTACCTTCCAGTATAGTTAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGTCTCCAGAAGCCATCAGCTTCTACCTTCCAGTATAGTTAGAGA  400

seq1  GTTAAAAGACTGGAGATCATCAGTATTTGGCCTTTGTCTAAAGCTTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGACTGGAGATCATCAGTATTTGGCCTTTGTCTAAAGCTTTGTC  450

seq1  CCAATTCACACCTGTGTTTTCCCTAATCCAGAGCAGGCCTCCAGCATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCACACCTGTGTTTTCCCTAATCCAGAGCAGGCCTCCAGCATCAC  500

seq1  TGTAATGTAGTAAATAAATATTGAGACCTAGAAACAGAAGTAAAGATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGTAGTAAATAAATATTGAGACCTAGAAACAGAAGTAAAGATGGT  550

seq1  ATTAGTAGGAGATGATGGGGAAGCAAGCCTTACTGAATTC  590
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAGGAGATGATGGGGAAGCAAGCCTTACTGAATTC  590