BAC Information

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BAC

Clone NameB6Ng01-089F22
Chromosome15 (Build37)
Map Location 80,564,763 - 80,711,571
singlet/doubletdoublet
Overlap geneTnrc6b
Upstream geneUnc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981
Downstream geneAdsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089F22.bB6Ng01-089F22.g
ACCDH901966DH901967
length1,1001,080
definitionDH901966|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F22, 5' end.DH901967|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,710,478 - 80,711,571)(80,564,763 - 80,565,850)
sequence
gaattcttatcccaaaggttcacattcttgtagttataactgttagggtc
tccccaagctgaagtgccatcatcaatgtccattttccgactaattgact
gtggggatggctcctcccaaccactgggttcatcatccttaggggttgta
ggctggggtccactgctccagttggaattagaaggtcgaacattgccttg
aggtggcgggggtgggcctccccatgaaccagaagcctctggctgtggtg
gcggtggctgctgctgctgttggtgttgtttattccaggaattgggctgt
ctgcctgtctcattccatgcaggggatcttttgcaatcttcccacccacc
ttttgatgctaggtttgtattcccaccattaccccaagttccaatttcat
tctgtcctccttcaccccacccagacacaggcttattggcagaactttcc
caattattatttttcacttgatccacctcctcgccccaaccattcttccc
agaagtccatccttggttgggttggcgcccacctccccacccctgatcct
tacaagaactctcattccaagaggaaggtgtcttttcatctgctcggcct
cctccccagttagaagagttgttgttcttatagtcattccagcctcctgt
gctcttggggtcttttccactctgtcgaggctgagagctccccccatcca
gacttcatttgattgctttggctgggtgcatctccccagccccctgagtt
cttggtctgtgtggcagcgctctcccacccctcagttcctttgtcagatt
tcctctcagggccttggcacctcttcaatatcccaacacttgtgtctgct
ttatttgaggttgggcctcagccagttgtttgagaagcactctagggatc
caatccattcggctccaaaaagagtctgcagataaagtcttgggcaatca
gatgcgttgggcctatatgatcgacgaccagaatatgactgtcactactt
tctgctttgtggttgcttccagtgctttgacttccacttcacttctgcga
acttggagatctttcccactagggagcttggcattgctgggtttttcagg

gaattcttgttagaattcattgaacagagtgtgcatgggcagtaagaagg
tgcagatagcagtagacttctaatgcttgacagtttggctgtgaagggag
cagagaaacagtgttagctgaaggtgatgtggggtgagagagggccaaag
aattttccccaagtaggcgttctcactactcatattcacccctctttttt
atagacacctctctccttcctttccttttccctctatgcccgcctctttt
ctcccttttttgacaggatctaatttggtagcccagtttgacttcaagct
ctcagtcctgcttctgcctccctactttttggattacaggtatgtgatgc
agtatctgtctagggagacagtcttgagcttcaaagttgttgagaagaat
gttctaagacagagggagttatggctagttgcagaattggagtttataag
gagaataatatcattttggtatttgaattttggtatttgagaggaggaac
cttggaagagagtggagtgttccttcatgggaatggatctttgattaact
gacatttaggaaaaagttaagtgaaagaagaggaaagtgaggcccagaca
tagccagcatcatggcagttacaaagttgttttcaggggtacttgagtta
gtcggccagaagggccaaagggcagactaggggtcagagagggtcgttgt
tgacaatgactccactttcattcttttacactgaatttaaactataactt
ctcttttgagttaaagttcccagtcactgttacaataaaagtctttacag
catcacattggtagggagctggaggtaaagtacttgttgcacaagcttca
tacagccaagtgttggccatgtgcatttgcatcttcagtgcttggatgca
tgggagagaacagttgggtttctggagaggcttctactcaggtagtctgg
tttagcccgtgatctgcagtaccagtgagagatgtctctaaaatatggtt
ggagaatgcagaggaagacacccaagtgactcagcttctatcccactttg
tactccactacacatttttaaaaggggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_80710478_80711571
seq2: B6Ng01-089F22.b_48_1147 (reverse)

seq1  CCTGAAAACCAAGGCAATGCCCAGGCTCCCTGTTGGGGAAGATCTTCCAG  50
      |||||||| |   |||||| ||| |||||||  |||| |||||| |||| 
seq2  CCTGAAAAACCCAGCAATG-CCAAGCTCCCTAGTGGGAAAGATC-TCCAA  48

seq1  CTCCGCAGGAAGTGAAGTTGGAGGTCAAAGCACTGGAAGCAACCACAAAG  100
       | |||| ||||||||| |||| |||||||||||||||||||||||||||
seq2  GTTCGCA-GAAGTGAAG-TGGAAGTCAAAGCACTGGAAGCAACCACAAAG  96

seq1  CAGGAAGTAGTGACAGTCATAATTCTGGTCGTCGGTCATATAGGCCC-AC  149
      ||| |||||||||||||||| ||||||||||||| |||||||||||| ||
seq2  CAGAAAGTAGTGACAGTCAT-ATTCTGGTCGTCGATCATATAGGCCCAAC  145

seq1  GCATCCTGATTGCC--AGGCTGTCT-TGCAGACTCTTTT--GAGCCGGAC  194
      |||| |||||||||  || || | | |||||||||||||  |||||| | 
seq2  GCAT-CTGATTGCCCAAGACTTTATCTGCAGACTCTTTTTGGAGCCGAAT  194

seq1  TGATTTGGACCCTAGGGTGC-TCTCAAAC-ACTGGCTG-GGGCCAAACTC  241
       |||| |  |||||| |||| |||||||| |||||||| || |||| |||
seq2  GGATTGGATCCCTAGAGTGCTTCTCAAACAACTGGCTGAGGCCCAACCTC  244

seq1  AAATTAAGCAGGACAC-AGTG-TGGGATATTGAAGAGGTGCCAAGG-CCT  288
      |||| ||||| ||||| |||| |||||||||||||||||||||||| |||
seq2  AAATAAAGCA-GACACAAGTGTTGGGATATTGAAGAGGTGCCAAGGCCCT  293

seq1  GAGGGGAAATCTGACAAAGGAACTGAGGGGTGGGAGAGCGCTGCCACACA  338
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAAATCTGACAAAGGAACTGAGGGGTGGGAGAGCGCTGCCACACA  343

seq1  GACCAAGAACTCAGGGGGCTGGGGAGATGCACCCAGCCAAAGCAATCAAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGAACTCAGGGGGCTGGGGAGATGCACCCAGCCAAAGCAATCAAA  393

seq1  TGAAGTCTGGATGGGGGGAGCTCTCAGCCTCGACAGAGTGG-AAAGACCC  437
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGAAGTCTGGATGGGGGGAGCTCTCAGCCTCGACAGAGTGGAAAAGACCC  443

seq1  CAAGAGCACAGGAGGCTGGAATGACTATAAGAACAACAACTCTTCTAACT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCACAGGAGGCTGGAATGACTATAAGAACAACAACTCTTCTAACT  493

seq1  GGGGAGGAGGCCGAGCAGATGAAAAGACACCTTCCTCTTGGAATGAGAGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAGGCCGAGCAGATGAAAAGACACCTTCCTCTTGGAATGAGAGT  543

seq1  TCTTGTAAGGATCAGGGGTGGGGAGGTGGGCGCCAACCCAACCAAGGATG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAAGGATCAGGGGTGGGGAGGTGGGCGCCAACCCAACCAAGGATG  593

seq1  GACTTCTGGGAAGAATGGTTGGGGCGAGGAGGTGGATCAAGTGAAAAATA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGGGAAGAATGGTTGGGGCGAGGAGGTGGATCAAGTGAAAAATA  643

seq1  ATAATTGGGAAAGTTCTGCCAATAAGCCTGTGTCTGGGTGGGGTGAAGGA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGGGAAAGTTCTGCCAATAAGCCTGTGTCTGGGTGGGGTGAAGGA  693

seq1  GGACAGAATGAAATTGGAACTTGGGGTAATGGTGGGAATACAAACCTAGC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAATGAAATTGGAACTTGGGGTAATGGTGGGAATACAAACCTAGC  743

seq1  ATCAAAAGGTGGGTGGGAAGATTGCAAAAGATCCCCTGCATGGAATGAGA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGGTGGGTGGGAAGATTGCAAAAGATCCCCTGCATGGAATGAGA  793

seq1  CAGGCAGACAGCCCAATTCCTGGAATAAACAACACCAACAGCAGCAGCAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGACAGCCCAATTCCTGGAATAAACAACACCAACAGCAGCAGCAG  843

seq1  CCACCGCCACCACAGCCAGAGGCTTCTGGTTCATGGGGAGGCCCACCCCC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGCCACCACAGCCAGAGGCTTCTGGTTCATGGGGAGGCCCACCCCC  893

seq1  GCCACCTCAAGGCAATGTTCGACCTTCTAATTCCAACTGGAGCAGTGGAC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTCAAGGCAATGTTCGACCTTCTAATTCCAACTGGAGCAGTGGAC  943

seq1  CCCAGCCTACAACCCCTAAGGATGATGAACCCAGTGGTTGGGAGGAGCCA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTACAACCCCTAAGGATGATGAACCCAGTGGTTGGGAGGAGCCA  993

seq1  TCCCCACAGTCAATTAGTCGGAAAATGGACATTGATGATGGCACTTCAGC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACAGTCAATTAGTCGGAAAATGGACATTGATGATGGCACTTCAGC  1043

seq1  TTGGGGAGACCCTAACAGTTATAACTACAAGAATGTGAACCTTTGGGATA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGACCCTAACAGTTATAACTACAAGAATGTGAACCTTTGGGATA  1093

seq1  AGAATTC  1094
      |||||||
seq2  AGAATTC  1100

seq1: chr15_80564763_80565850
seq2: B6Ng01-089F22.g_71_1150

seq1  GAATTCTTGCTAGAATTCATTGAACAGAGTGTGCATGGGCAGTAAGAAGG  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTAGAATTCATTGAACAGAGTGTGCATGGGCAGTAAGAAGG  50

seq1  TGCAGATAGCAGTAGACTTCTAATGCTTGACAGTTTGGCTGTGAAGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATAGCAGTAGACTTCTAATGCTTGACAGTTTGGCTGTGAAGGGAG  100

seq1  CAGAGAAACAGTGTTAGCTGAAGGTGATGTGGGGTGAGAGAGGGCCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACAGTGTTAGCTGAAGGTGATGTGGGGTGAGAGAGGGCCAAAG  150

seq1  AATTTTCCCCAAGTAGGCGTTCTCACTACTCATATTCACCCCTCTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCCCAAGTAGGCGTTCTCACTACTCATATTCACCCCTCTTTTTT  200

seq1  ATAGACACCTCTCTCCTTCCTTTCCTTTTCCCTCTATGCCCGCCTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACACCTCTCTCCTTCCTTTCCTTTTCCCTCTATGCCCGCCTCTTTT  250

seq1  CTCCCTTTTTTGACAGGATCTAATTTGGTAGCCCAGTTTGACTTCAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTTTTGACAGGATCTAATTTGGTAGCCCAGTTTGACTTCAAGCT  300

seq1  CTCAGTCCTGCTTCTGCCTCCCTACTTTTTGGATTACAGGTATGTGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCTGCTTCTGCCTCCCTACTTTTTGGATTACAGGTATGTGATGC  350

seq1  AGTATCTGTCTAGGGAGACAGTCTTGAGCTTCAAAGTTGTTGAGAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGTCTAGGGAGACAGTCTTGAGCTTCAAAGTTGTTGAGAAGAAT  400

seq1  GTTCTAAGACAGAGGGAGTTATGGCTAGTTGCAGAATTGGAGTTTATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAGACAGAGGGAGTTATGGCTAGTTGCAGAATTGGAGTTTATAAG  450

seq1  GAGAATAATATCATTTTGGTATTTGAATTTTGGTATTTGAGAGGAGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAATATCATTTTGGTATTTGAATTTTGGTATTTGAGAGGAGGAAC  500

seq1  CTTGGAAGAGAGTGGAGTGTTCCTTCATGGGAATGGATCTTTGATTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAGAGAGTGGAGTGTTCCTTCATGGGAATGGATCTTTGATTAACT  550

seq1  GACATTTAGGAAAAAGTTAAGTGAAAGAAGAGGAAAGTGAGGCCCAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTAGGAAAAAGTTAAGTGAAAGAAGAGGAAAGTGAGGCCCAGACA  600

seq1  TAGCCAGCATCATGGCAGTTACAAAGTTGTTTTCAGGGGTACTTGAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGCATCATGGCAGTTACAAAGTTGTTTTCAGGGGTACTTGAGTTA  650

seq1  GTCGGCCAGAAGGGCCAAAGGGCAGACTAGGGGTCAGAGAGGGTCGTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGCCAGAAGGGCCAAAGGGCAGACTAGGGGTCAGAGAGGGTCGTTGT  700

seq1  TGACAATGACTCCACTTTCATTCTTTTACACTGAATTTAAACTATAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGACTCCACTTTCATTCTTTTACACTGAATTTAAACTATAACTT  750

seq1  CTCTTTTGAGTTAAAGTTTCCCAGTCACTGTTACATAAAAAGTCTTTACA  800
      |||||||||||||||| ||||||||||||||||||  |||||||||||||
seq2  CTCTTTTGAGTTAAAG-TTCCCAGTCACTGTTACAATAAAAGTCTTTACA  799

seq1  GCATCACATTGGTAGGGAGCTGGAGGTAAAGTACTTGTTGCACAAGCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACATTGGTAGGGAGCTGGAGGTAAAGTACTTGTTGCACAAGCTTC  849

seq1  ATACAAGCCAAGTG-TGGCCATGTGCATTTGCAACTTCAGTGCTTGGATG  899
      |||| ||||||||| |||||||||||||||||| ||||||||||||||||
seq2  ATAC-AGCCAAGTGTTGGCCATGTGCATTTGCATCTTCAGTGCTTGGATG  898

seq1  CATGGGAGAGACAAGT--GGGTTCTGGAGAGGCTCAGACTCAGGTCAGTC  947
      |||||||||||  |||  || |||||||||||||   |||||||| ||||
seq2  CATGGGAGAGAACAGTTGGGTTTCTGGAGAGGCTTCTACTCAGGT-AGTC  947

seq1  TGGTTAAGCCAGTGAACTGCAGTACCAGTGAGAGATGTCTCAAAAAATAT  997
      ||||| |||| |||| |||||||||||||||||||||||||  |||||||
seq2  TGGTTTAGCCCGTGATCTGCAGTACCAGTGAGAGATGTCTC-TAAAATAT  996

seq1  GG-TGGAGAAGGCAGAGGAAAGACACCCAAAGTTGACCTCCAGCTTCTA-  1045
      || ||||||| ||||||| |||||||||||   ||||   ||||||||| 
seq2  GGTTGGAGAATGCAGAGG-AAGACACCCAA--GTGAC--TCAGCTTCTAT  1041

seq1  CCCAC-TTGTACTCACACATACAACATTTTTAAAAATGGGGAAA  1088
      ||||| |||||||| ||| ||| ||||||||||||  |||||||
seq2  CCCACTTTGTACTC-CAC-TAC-ACATTTTTAAAA--GGGGAAA  1080