BAC Information

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BAC

Clone NameB6Ng01-090L05
Chromosome15 (Build37)
Map Location 30,189,362 - 30,315,165
singlet/doubletdoublet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap, EG625796, 5730557B15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090L05.bB6Ng01-090L05.g
ACCDH902931DH902932
length6511,120
definitionDH902931|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L05, 5' end.DH902932|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,314,515 - 30,315,165)(30,189,362 - 30,190,492)
sequence
gaattcagagtagcctagagggaacacagcaagtcatactgtggggttat
tggcagggaagcagacataatagcatagaggacagatatctgctcagctc
tagtgctgattaaggcttgttataaataataaaagctatgtgtcttttat
ttaggaatcaaatgtcaaaggtgaggtagaagcccctaactgagattaat
tttttttacaacagattaatttcccactaatagttccttaagaataactt
taatcattagtttactttacagggagccagggtaatgtgtacgaccggta
catgctagctcttgtatcagagtataccagtgaaattacataactctgta
tgtgtgtgaggggggaggtggcagggacagtgagtctgtagactatctgg
cagcctagcctatgcatctcaggtccaccacttagcagttgtaaaatgac
cattcaatctggctgctttgctgctggaatgcgggcagcgaaactgatat
taaaaagttgtatttccatttcatacacattgttctgaatgtcacctagt
tataccatacagaggatcactaagagagagagagagagagagagagagag
agagagagagagagagatagatagagagagagatcgccaagattctggca
a
gaattcacccaactgagacaaagtgaactaagtatgttagatagacacca
ttgaaagtgtaggactgtttttatccattctttgctctgctgaggttccc
ttagtaacaaatcataggttggagtgggaatctactgagatgtttcctgg
agtgtatcaagatggctgccagggccctggtgaaggggacagggttaaag
aggcagaagtgctttctttgtcttggctttatccagactctttgaccatg
acaacagttgcttcagcagccatgcagggaagtgatctactctgagctca
ccaggcagaggattgaacaatcaccagctacccaggcttatgccgacagc
agtactgggggttagtttgctgttaaacccctctgggtaccctcattctc
cagcagatcattgaaaaggccaagatggggaggcagacttgctgttgcct
gtgacctactgacctactgacctactgacctactgacctactgagcggag
cacaggtaattgcaccaacctagttcccactttttctcagtattggggaa
aacgttccttacagttgtaccatggattttggtttttgttgtcgttttgt
tttgtttttccattatgaggtttaaagtggggctggagagatggtgccac
agggaagggcacatgctgctcttccaggaaggctgggtttggtttccagc
gctcacatcaggtcaccacagaccacctgtaaggacagcctcagatggtc
tcctgtgctcttttggcctctgcaggcaattgcatgcctatgtgcatatg
tgcacatgcacatacacacatactcatcatttaaaataaatctttaaagg
aaaaaatagatttaaaagacttttccatttctttttaaatttccatgccc
tttttttctttctgtatttccagacttgataatatgcactacttagatat
tattgattatcactgtgcagatatgtttatatagggacttcctagactac
ctcacacagctgggtataatgaacaccagcgaagagcaagcagcaaacaa
agccatttgtacacataggagaaggttctggctctgaacagttctagcct
ttttctgactctgtcccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_30314515_30315165
seq2: B6Ng01-090L05.b_45_695 (reverse)

seq1  TTGCAAGAATCTTGGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50
      |||| |||||||||||| ||||||||||| ||| ||||||||||||||||
seq2  TTGCCAGAATCTTGGCGATCTCTCTCTCTATCTATCTCTCTCTCTCTCTC  50

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTAGTGATCCTCTGTATGGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTAGTGATCCTCTGTATGGTAT  100

seq1  AACTAGGTGACATTCAGAACAATGTGTATGAAATGGAAATACAACTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTGACATTCAGAACAATGTGTATGAAATGGAAATACAACTTTTT  150

seq1  AATATCAGTTTCGCTGCCCGCATTCCAGCAGCAAAGCAGCCAGATTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGTTTCGCTGCCCGCATTCCAGCAGCAAAGCAGCCAGATTGAAT  200

seq1  GGTCATTTTACAACTGCTAAGTGGTGGACCTGAGATGCATAGGCTAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTTTACAACTGCTAAGTGGTGGACCTGAGATGCATAGGCTAGGCT  250

seq1  GCCAGATAGTCTACAGACTCACTGTCCCTGCCACCTCCCCCCTCACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATAGTCTACAGACTCACTGTCCCTGCCACCTCCCCCCTCACACAC  300

seq1  ATACAGAGTTATGTAATTTCACTGGTATACTCTGATACAAGAGCTAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGTTATGTAATTTCACTGGTATACTCTGATACAAGAGCTAGCAT  350

seq1  GTACCGGTCGTACACATTACCCTGGCTCCCTGTAAAGTAAACTAATGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCGGTCGTACACATTACCCTGGCTCCCTGTAAAGTAAACTAATGATT  400

seq1  AAAGTTATTCTTAAGGAACTATTAGTGGGAAATTAATCTGTTGTAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATTCTTAAGGAACTATTAGTGGGAAATTAATCTGTTGTAAAAAA  450

seq1  AATTAATCTCAGTTAGGGGCTTCTACCTCACCTTTGACATTTGATTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCTCAGTTAGGGGCTTCTACCTCACCTTTGACATTTGATTCCTA  500

seq1  AATAAAAGACACATAGCTTTTATTATTTATAACAAGCCTTAATCAGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGACACATAGCTTTTATTATTTATAACAAGCCTTAATCAGCACT  550

seq1  AGAGCTGAGCAGATATCTGTCCTCTATGCTATTATGTCTGCTTCCCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGAGCAGATATCTGTCCTCTATGCTATTATGTCTGCTTCCCTGCC  600

seq1  AATAACCCCACAGTATGACTTGCTGTGTTCCCTCTAGGCTACTCTGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCCCACAGTATGACTTGCTGTGTTCCCTCTAGGCTACTCTGAATT  650

seq1  C  651
      |
seq2  C  651

seq1: chr15_30189362_30190492
seq2: B6Ng01-090L05.g_69_1188

seq1  GAATTCACCCAACTGAGACAAAGTGAACTAAGTATGTTAGATAGACACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCAACTGAGACAAAGTGAACTAAGTATGTTAGATAGACACCA  50

seq1  TTGAAAGTGTAGGACTGTTTTTATCCATTCTTTGCTCTGCTGAGGTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTGTAGGACTGTTTTTATCCATTCTTTGCTCTGCTGAGGTTCCC  100

seq1  TTAGTAACAAATCATAGGTTGGAGTGGGAATCTACTGAGATGTTTCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAACAAATCATAGGTTGGAGTGGGAATCTACTGAGATGTTTCCTGG  150

seq1  AGTGTATCAAGATGGCTGCCAGGGCCCTGGTGAAGGGGACAGGGTTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATCAAGATGGCTGCCAGGGCCCTGGTGAAGGGGACAGGGTTAAAG  200

seq1  AGGCAGAAGTGCTTTCTTTGTCTTGGCTTTATCCAGACTCTTTGACCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAGTGCTTTCTTTGTCTTGGCTTTATCCAGACTCTTTGACCATG  250

seq1  ACAACAGTTGCTTCAGCAGCCATGCAGGGAAGTGATCTACTCTGAGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTTGCTTCAGCAGCCATGCAGGGAAGTGATCTACTCTGAGCTCA  300

seq1  CCAGGCAGAGGATTGAACAATCACCAGCTACCCAGGCTTATGCCGACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGAGGATTGAACAATCACCAGCTACCCAGGCTTATGCCGACAGC  350

seq1  AGTACTGGGGGTTAGTTTGCTGTTAAACCCCTCTGGGTACCCTCATTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGGGGGTTAGTTTGCTGTTAAACCCCTCTGGGTACCCTCATTCTC  400

seq1  CAGCAGATCATTGAAAAGGCCAAGATGGGGAGGCAGACTTGCTGTTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATCATTGAAAAGGCCAAGATGGGGAGGCAGACTTGCTGTTGCCT  450

seq1  GTGACCTACTGACCTACTGACCTACTGACCTACTGACCTACTGAGCGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTACTGACCTACTGACCTACTGACCTACTGACCTACTGAGCGGAG  500

seq1  CACAGGTAATTGCACCAACCTAGTTCCCACTTTTTCTCAGTATTGGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTAATTGCACCAACCTAGTTCCCACTTTTTCTCAGTATTGGGGAA  550

seq1  AACGTTCCTTACAGTTGTACCATGGATTTTGGTTTTTGTTGTCGTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTCCTTACAGTTGTACCATGGATTTTGGTTTTTGTTGTCGTTTTGT  600

seq1  TTTGTTTTTCCATTATGAGGTTTAAAGTGGGGCTGGAGAGATGGTGCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTCCATTATGAGGTTTAAAGTGGGGCTGGAGAGATGGTGCCAC  650

seq1  AGGGAAGGGCACATGCTGCTCTTCCAGGAAGGCTGGGTTTGGTTTCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGGCACATGCTGCTCTTCCAGGAAGGCTGGGTTTGGTTTCCAGC  700

seq1  GCTCACATCAGGTCACCACAGACCACCTGTAAGGACAGCCTCAGATGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACATCAGGTCACCACAGACCACCTGTAAGGACAGCCTCAGATGGTC  750

seq1  TCCTGTGCTCTTTTGGCCTCTGCAGGCAATTGCATGCCTATGTGCATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGCTCTTTTGGCCTCTGCAGGCAATTGCATGCCTATGTGCATATG  800

seq1  TGCACATGCACATACACACATACTCATCATTTAAAATAAATCTTTAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGCACATACACACATACTCATCATTTAAAATAAATCTTTAAAGG  850

seq1  AAAAAATAGATTTAAAAAGACTTTTCCATTTCTTTT--AAATTCCATGCC  898
      ||||||||||||| ||||||||||||||||||||||  || |||||||||
seq2  AAAAAATAGATTT-AAAAGACTTTTCCATTTCTTTTTAAATTTCCATGCC  899

seq1  CTTTTATTC-TTCTGTATTTCCAAGACTTGATATCATGCAACTACTTAAA  947
      ||||| ||| |||||||||||| ||||||||||  |||| |||||||| |
seq2  CTTTTTTTCTTTCTGTATTTCC-AGACTTGATAATATGC-ACTACTTAGA  947

seq1  TATTTATTGGATTATCACTGTGCAGATATGTTTATATAGGGACTTCCTAG  997
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TA-TTATT-GATTATCACTGTGCAGATATGTTTATATAGGGACTTCCTAG  995

seq1  ACTAACTCACACAGCCTGTGTATAAGGAACAACCAGCGAAAGAGCAAAGC  1047
      |||| ||||||||| ||| |||||| |||| ||||||| |||||| ||||
seq2  ACTACCTCACACAG-CTGGGTATAATGAAC-ACCAGCG-AAGAGC-AAGC  1041

seq1  AAGGCAAACAAAGGCCATTTGTACCACATAGGAGAAAGTTTCTGGGCTCT  1097
      |  ||||||||| |||||||||| |||||||||| ||| |||| ||||||
seq2  A--GCAAACAAA-GCCATTTGTA-CACATAGGAG-AAGGTTCT-GGCTCT  1085

seq1  GGAAACAGTTCTAGCCTTTTTCTGACTC---CCCTTC  1131
      |  |||||||||||||||||||||||||   ||||||
seq2  G--AACAGTTCTAGCCTTTTTCTGACTCTGTCCCTTC  1120