BAC Information

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BAC

Clone NameB6Ng01-090L08
Chromosome15 (Build37)
Map Location 8,773,212 - 8,887,700
singlet/doubletdoublet
Overlap geneEG622770, LOC268781, LOC382969
Upstream geneGdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633, Slc1a3
Downstream geneLOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090L08.bB6Ng01-090L08.g
ACCDH902937DH902938
length1,162445
definitionDH902937|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L08, 5' end.DH902938|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,886,516 - 8,887,700)(8,773,212 - 8,773,662)
sequence
gaattccctctgcccatctgaaagggctctgagcaaggaggtctgtagtg
tccttcctcctgatacccgtgtatagttggtctcaagagaaaacagcaga
gatttggaggatgctgcatttctgtgctcagaacctacatgtctctggca
cggaaaagagaataggtgtaggtggagacctgagagggttaggtggctct
ggaagatcctaggattcatcatgaatggaatatatgacaagagcctcagg
cttcctccatcttcacatctcaccattgccacaggatgatactctgcagg
actctgaagatttttgtcatttctcactgtacccatagcttcccatagct
gttgtattaaccataagattgtggttagcaatgtaatattatatgaatgt
taaagaggtccctgtctcacacatgtctcaccattagagagactccgtca
cgctgatgagttccctagaaaacatcacatgcacggattttcaaaagaag
tgcttgtttacaggagatgtcctaggtccatttttccttctctcctccac
tcttatgccagccaccacctggcaataacacagtgctggctttcacccag
taatgtcccatggaagacagcatttttctgctctgttgttgaaagagcta
ggcatgcctcatttccacaacttctcagaacagtacagttgatctgttca
agctaaaccctcttgctcatactttgtctttcccctttactgaggggccc
aggaccctctgctcctttccaccccactttaaactttcttctgaaatgta
tttgatagcataggaatgggagcaaaacctggaaagctgagatgcaaaat
aatacactcaatattgggatttcaacaaacaaaggcagaaatgattatct
ggtataacttcatccttagtgcaactagtggtttaggtgtcagagagagg
aggaatataaatattcatttagttagtgagtaccccaacccataagagac
tttcaatgtagtgttaagaactccatctttgggactggagagagatggct
cagtggtaagaacattgttattcttccgagacaaaaagtttgtccagcac
ctcatgtactccagctctaggtaacacacacctctttgtctaggacctgc
atgcatgctaca
tccatgggctataaaaatgagttcttggggggggggcatctacaatgtat
ggttgtggcaaggatgtcccttctagcaaggatgtcctttctagcaggga
tgtccacatggagtggaccttgacaggtgaggaaaccagcagattttaac
actcgagtgggctggaatcagagatacacacagattggggtttgcagaaa
taacataactgggaactagctagccttatttgctaaatgaattccatggg
atatttctgaatgggtgattgttgggaactaaaaaggggagccctgggga
atagggggaaggggggagacccacaccccgccagagttctacctattctc
tggtcagtcaggcatgggagagctgccatacaatttccacttatccccag
gtgagcatctaagcctctgactcactcttggggggtgggggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_8886516_8887700
seq2: B6Ng01-090L08.b_46_1207 (reverse)

seq1  TGTATGCATGCATGCAAGTGTCCATAGAGACCAAAGAGAGTGTTGGTTAC  50
      |||| ||||||||||| ||   | ||||   ||||||| ||||  |||||
seq2  TGTA-GCATGCATGCAGGT---CCTAGA---CAAAGAG-GTGTGTGTTAC  42

seq1  CTAGAGCTGGAGTTACATGGAGTTGCTGGGAACCAAACTTTTGTCCTCTG  100
      |||||||||||| ||||| ||| ||||||    |||||||||   ||| |
seq2  CTAGAGCTGGAG-TACAT-GAGGTGCTGG---ACAAACTTTTTGTCTC-G  86

seq1  GAAGAATAACAAATGTTCTTAACCACTGAGCCA--TCTCTCCAGTCCCAA  148
      |||||||||| ||||||||| ||||||||||||  |||||||||||||||
seq2  GAAGAATAAC-AATGTTCTT-ACCACTGAGCCATCTCTCTCCAGTCCCAA  134

seq1  AGATGGAGTTCTTAACCACTACATTGGAAAGTCTCTTATTGGGGTTGGGG  198
      ||||||||||||||| ||||||||| |||||||||||||  ||||| |||
seq2  AGATGGAGTTCTTAA-CACTACATT-GAAAGTCTCTTAT--GGGTT-GGG  179

seq1  GTACTCACTAACTAAATGAATATTTTATTATTCCTCCTCTCTCTGACACC  248
      |||||||||||||||||||||||||   |||||||||||||||||||| |
seq2  GTACTCACTAACTAAATGAATATTT--ATATTCCTCCTCTCTCTGACA-C  226

seq1  CTAAACCACCTAGTTGCACTAAGGATGAAGTTATACCAGATAATCATTTC  298
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCA-CTAGTTGCACTAAGGATGAAGTTATACCAGATAATCATTTC  275

seq1  TGCCTTTGTTTGTTGAAATCCCAATATTGAGTGTATTATTTTGCATCTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGTTTGTTGAAATCCCAATATTGAGTGTATTATTTTGCATCTCA  325

seq1  GCTTTCCAGGTTTTGCTCCCATTCCTATGCTATCAAATACATTTCAGAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCAGGTTTTGCTCCCATTCCTATGCTATCAAATACATTTCAGAAG  375

seq1  AAAGTTTAAAGTGGGGTGGAAAGGAGCAGAGGGTCCTGGGCCCCTCAGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTAAAGTGGGGTGGAAAGGAGCAGAGGGTCCTGGGCCCCTCAGTA  425

seq1  AAGGGGAAAGACAAAGTATGAGCAAGAGGGTTTAGCTTGAACAGATCAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAAGACAAAGTATGAGCAAGAGGGTTTAGCTTGAACAGATCAAC  475

seq1  TGTACTGTTCTGAGAAGTTGTGGAAATGAGGCATGCCTAGCTCTTTCAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTTCTGAGAAGTTGTGGAAATGAGGCATGCCTAGCTCTTTCAAC  525

seq1  AACAGAGCAGAAAAATGCTGTCTTCCATGGGACATTACTGGGTGAAAGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGCAGAAAAATGCTGTCTTCCATGGGACATTACTGGGTGAAAGCC  575

seq1  AGCACTGTGTTATTGCCAGGTGGTGGCTGGCATAAGAGTGGAGGAGAGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTGTTATTGCCAGGTGGTGGCTGGCATAAGAGTGGAGGAGAGAA  625

seq1  GGAAAAATGGACCTAGGACATCTCCTGTAAACAAGCACTTCTTTTGAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATGGACCTAGGACATCTCCTGTAAACAAGCACTTCTTTTGAAAA  675

seq1  TCCGTGCATGTGATGTTTTCTAGGGAACTCATCAGCGTGACGGAGTCTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGCATGTGATGTTTTCTAGGGAACTCATCAGCGTGACGGAGTCTCT  725

seq1  CTAATGGTGAGACATGTGTGAGACAGGGACCTCTTTAACATTCATATAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGTGAGACATGTGTGAGACAGGGACCTCTTTAACATTCATATAAT  775

seq1  ATTACATTGCTAACCACAATCTTATGGTTAATACAACAGCTATGGGAAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTGCTAACCACAATCTTATGGTTAATACAACAGCTATGGGAAGC  825

seq1  TATGGGTACAGTGAGAAATGACAAAAATCTTCAGAGTCCTGCAGAGTATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTACAGTGAGAAATGACAAAAATCTTCAGAGTCCTGCAGAGTATC  875

seq1  ATCCTGTGGCAATGGTGAGATGTGAAGATGGAGGAAGCCTGAGGCTCTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGGCAATGGTGAGATGTGAAGATGGAGGAAGCCTGAGGCTCTTG  925

seq1  TCATATATTCCATTCATGATGAATCCTAGGATCTTCCAGAGCCACCTAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTCCATTCATGATGAATCCTAGGATCTTCCAGAGCCACCTAAC  975

seq1  CCTCTCAGGTCTCCACCTACACCTATTCTCTTTTCCGTGCCAGAGACATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGGTCTCCACCTACACCTATTCTCTTTTCCGTGCCAGAGACATG  1025

seq1  TAGGTTCTGAGCACAGAAATGCAGCATCCTCCAAATCTCTGCTGTTTTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCTGAGCACAGAAATGCAGCATCCTCCAAATCTCTGCTGTTTTCT  1075

seq1  CTTGAGACCAACTATACACGGGTATCAGGAGGAAGGACACTACAGACCTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACCAACTATACACGGGTATCAGGAGGAAGGACACTACAGACCTC  1125

seq1  CTTGCTCAGAGCCCTTTCAGATGGGCAGAGGGAATTC  1185
      |||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAGAGCCCTTTCAGATGGGCAGAGGGAATTC  1162

seq1: chr15_8773212_8773662
seq2: B6Ng01-090L08.g_68_518

seq1  GAATTCTCCATGGGCTATAAAAATGAGTTCTTGGGGGGGGGGCATCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGGGCTATAAAAATGAGTTCTTGGGGGGGGGGCATCTACA  50

seq1  ATGTATGGTTGTGGCAAGGATGTCCCTTCTAGCAAGGATGTCCTTTCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGTTGTGGCAAGGATGTCCCTTCTAGCAAGGATGTCCTTTCTAG  100

seq1  CAGGGATGTCCACATGGAGTGGACCTTGACAGGTGAGGAAACCAGCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGTCCACATGGAGTGGACCTTGACAGGTGAGGAAACCAGCAGAT  150

seq1  TTTAACACTCGAGTGGGCTGGAATCAGAGATACACACAGATTGGGGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACACTCGAGTGGGCTGGAATCAGAGATACACACAGATTGGGGTTTG  200

seq1  CAGAAATAACATAACTGGGAACTAGCTAGCCTTATTTGCTAAATGAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAACATAACTGGGAACTAGCTAGCCTTATTTGCTAAATGAATTC  250

seq1  CATGGGATATTTCTGAATGGGTGATTGTTGGGAACTAAAAAGGGGAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGATATTTCTGAATGGGTGATTGTTGGGAACTAAAAAGGGGAGCCC  300

seq1  TGGGGAATAGGGGGAAGGGGGGAGACCCACACCCCGCCAGAGTTCTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAATAGGGGGAAGGGGGGAGACCCACACCCCGCCAGAGTTCTACCT  350

seq1  ATTCTCTGGTCAGTCAGGCATGGGAGAGCTGCCATACAATTTCCACTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGGTCAGTCAGGCATGGGAGAGCTGCCATACAATTTCCACTTAT  400

seq1  CCCCAGGTGAGCATCTAAGCCTCTGACTCACTCTTGGGGGGTGGGGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGTGAGCATCTAAGCCTCTGACTCACTCTTGGGGGGTGGGGGGGA  450

seq1  G  451
      |
seq2  G  451