BAC Information

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BAC

Clone NameB6Ng01-090M01
Chromosome15 (Build37)
Map Location 92,688,055 - 92,862,184
singlet/doubletdoublet
Overlap geneLOC100042552
Upstream geneMuc19, Smgc, LOC100042529, Cntn1, Pdzrn4
Downstream geneLOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090M01.bB6Ng01-090M01.g
ACCDH902971DH902972
length1,1031,105
definitionDH902971|Mus musculus domesticus DNA, BAC clone: B6Ng01-090M01, 5' end.DH902972|Mus musculus domesticus DNA, BAC clone: B6Ng01-090M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,861,073 - 92,862,184)(92,688,055 - 92,689,164)
sequence
gaattctcactaccctctctgtccatagcatgctatatataaatatggtg
gacacctacaaatatatgtaacagttgaatgaacttttgcaaagtaaaac
ctctgcataattagaatccagttctggaaacagcatcaccagctcctaaa
tgctctgtgtttcctttacagaccccaaccttgcgttctctacaagggta
accgtaatctgactcctagcattgcagcctagatctgagactcagtacca
tgagattccagtactctgcagcatttttgctgtcactgctacgtagtatt
tggttgtgtgagttccctactcaaagtgaatgtcacagcactttttttct
gcatttcactactaagcagagtgtgttttgatactgggtgatctttcagg
tgggtgcatatatgcatttggttagatatggccttggcggtgggattgtg
gggctaccgcatgggttcacccttagaagatgttaatgctatagttggaa
actggaatgtcccccccagacccatgccttgaatgattagtatctagctc
tgtagtgccgtttcgaggccactcgaggaaagtaggtaagtagaggaggt
gacttgaagatgatacttgtttgtggtttctgcttcctggactatggcca
cagggtgaacaactgctgtcatgtgtaacctttgccactggccttaaccc
caactatgaaaggaaataccatgaaactaagaactgcaataaatctttcc
tcccataaattattcctgtcagaaattttgttacaataatgagaaaaaaa
ccccacaattgttaaatacttctccaatgtgattgtacccacctttatgt
aagtgttccagttgcccccctatgcttgagtcttggtattgaaatttttt
ttttatctgaaacaatctcatgatggttgtgtagtggtattcactatgat
ttgtctggacttctttgttgagtaattgagtcagccagcctttgtacact
aacgatccttcatgttagttgatgtgatatatgggaatatttgtattgga
aggaattcactggggcatgtgtaaaaatggaggctgttctgcagtccagg
tga
gaattcagttaagggatcaagaacccaccatagctacacataactagctt
cctaaatatccaatattcaaaatagtttccttcatttaataggcctttct
ccaagtctcgtatgactgttgcaacaaataactatgaacttagagttgaa
aactttagtaaggtcaaagttcatgcaaaatatatctgcatcctcaccac
ttcatgggttggactgaatgtccaagccatcctacactacatagtgacac
cagtttcagaaacaactaggtccatacactttaacgagcttcaggactag
tcagtgaaagatgtttcctgtagggggagatcagctccccttaccagcag
tcactgtgtacttgtgagggctattcctggttgtcaacttgactatatct
ggaatgaactccaatccagaattggagggctcacctgtgatccagatctt
gaagctggaagacacaagtttctgacctgaatcttgacgtggaaatcttg
aggcagtggctatgaacagcttaggctcaggcaaggtagtacattccgtt
aatgtacttaaaggagacagaggcaagcagatctctgagttcccggccag
cctggacaaagcaagctttagatccagtcatggtgggacacacctttcct
ctgggtcacatcttctgctggaggattacatgaggacattggaagaagga
agattcgctcttcttcaactgcttgcacttacttgccaacctgtctgttg
gaatctacttctacagaaggtcagctgaaacaactagcctcctgggactg
agcaactcctagatccttggacttctcattcacagctgcccattgttggg
ttagttggactgcagactataagtcatcacattaagttccctcatataga
gagacatcccataatttctgtgactctagagaaccctgactaagacagta
ctcaactgtgggagccattttgtctgcttctgtgacagcctgttttgtga
agcagagcaaatcaggtctactgcagatttcctgacctagtgagcatgga
accataagaagggatacccttggagctcaaagtaattaattgttctgtta
tctcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_92861073_92862184
seq2: B6Ng01-090M01.b_47_1149 (reverse)

seq1  TCACCTGGACTGCTAGAACAGCCTCCTATTTTTACACATGCCCCAGTAGA  50
      ||||||||||||| |||||||||||| |||||||||||||||||||| ||
seq2  TCACCTGGACTGC-AGAACAGCCTCC-ATTTTTACACATGCCCCAGT-GA  47

seq1  ATATCCTTTCAATACAAATA-TACCATATATCACATCAAACTATACATGA  99
      || ||||| ||||||||||| | |||||||||||||| ||||| ||||||
seq2  AT-TCCTTCCAATACAAATATTCCCATATATCACATC-AACTA-ACATGA  94

seq1  AGGATCCGTATGTGTACAAAGGCTGGCTGACTCAATTACTCAACAAAGAA  149
      ||||| |||  |||||||||||||||||||||||||||||||||||||||
seq2  AGGAT-CGTTAGTGTACAAAGGCTGGCTGACTCAATTACTCAACAAAGAA  143

seq1  GTCCAAGACAAAATCATAGTGAATACCACTACACAACCATCATGAGATTG  199
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTCC-AGAC-AAATCATAGTGAATACCACTACACAACCATCATGAGATTG  191

seq1  TTTCAGATAAAAAAAAAA-TTCAATACCAAGGACTTCAAGCATAGGGGGG  248
      |||||||||||||||||| ||||||||||| ||| |||||||||||||||
seq2  TTTCAGATAAAAAAAAAATTTCAATACCAA-GAC-TCAAGCATAGGGGGG  239

seq1  CAACTGGAACACTTACATAAAGGTGGGTACAATCACATTGGAGAAGTATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGAACACTTACATAAAGGTGGGTACAATCACATTGGAGAAGTATT  289

seq1  TAACAATTGTGGGGTTTTTTTCTCATTATTGTAACAAAATTTCTGACAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATTGTGGGGTTTTTTTCTCATTATTGTAACAAAATTTCTGACAGG  339

seq1  AATAATTTATGGGAGGAAAGATTTATTGCAGTTCTTAGTTTCATGGTATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTATGGGAGGAAAGATTTATTGCAGTTCTTAGTTTCATGGTATT  389

seq1  TCCTTTCATAGTTGGGGTTAAGGCCAGTGGCAAAGGTTACACATGACAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCATAGTTGGGGTTAAGGCCAGTGGCAAAGGTTACACATGACAGC  439

seq1  AGTTGTTCACCCTGTGGCCATAGTCCAGGAAGCAGAAACCACAAACAAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTCACCCTGTGGCCATAGTCCAGGAAGCAGAAACCACAAACAAGT  489

seq1  ATCATCTTCAAGTCACCTCCTCTACTTACCTACTTTCCTCGAGTGGCCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTCAAGTCACCTCCTCTACTTACCTACTTTCCTCGAGTGGCCTC  539

seq1  GAAACGGCACTACAGAGCTAGATACTAATCATTCAAGGCATGGGTCTGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGGCACTACAGAGCTAGATACTAATCATTCAAGGCATGGGTCTGGG  589

seq1  GGGGACATTCCAGTTTCCAACTATAGCATTAACATCTTCTAAGGGTGAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACATTCCAGTTTCCAACTATAGCATTAACATCTTCTAAGGGTGAAC  639

seq1  CCATGCGGTAGCCCCACAATCCCACCGCCAAGGCCATATCTAACCAAATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCGGTAGCCCCACAATCCCACCGCCAAGGCCATATCTAACCAAATG  689

seq1  CATATATGCACCCACCTGAAAGATCACCCAGTATCAAAACACACTCTGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGCACCCACCTGAAAGATCACCCAGTATCAAAACACACTCTGCT  739

seq1  TAGTAGTGAAATGCAGAAAAAAAGTGCTGTGACATTCACTTTGAGTAGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTGAAATGCAGAAAAAAAGTGCTGTGACATTCACTTTGAGTAGGG  789

seq1  AACTCACACAACCAAATACTACGTAGCAGTGACAGCAAAAATGCTGCAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACACAACCAAATACTACGTAGCAGTGACAGCAAAAATGCTGCAGA  839

seq1  GTACTGGAATCTCATGGTACTGAGTCTCAGATCTAGGCTGCAATGCTAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGAATCTCATGGTACTGAGTCTCAGATCTAGGCTGCAATGCTAGG  889

seq1  AGTCAGATTACGGTTACCCTTGTAGAGAACGCAAGGTTGGGGTCTGTAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATTACGGTTACCCTTGTAGAGAACGCAAGGTTGGGGTCTGTAAA  939

seq1  GGAAACACAGAGCATTTAGGAGCTGGTGATGCTGTTTCCAGAACTGGATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAGAGCATTTAGGAGCTGGTGATGCTGTTTCCAGAACTGGATT  989

seq1  CTAATTATGCAGAGGTTTTACTTTGCAAAAGTTCATTCAACTGTTACATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATGCAGAGGTTTTACTTTGCAAAAGTTCATTCAACTGTTACATA  1039

seq1  TATTTGTAGGTGTCCACCATATTTATATATAGCATGCTATGGACAGAGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAGGTGTCCACCATATTTATATATAGCATGCTATGGACAGAGAG  1089

seq1  GGTAGTGAGAATTC  1112
      ||||||||||||||
seq2  GGTAGTGAGAATTC  1103

seq1: chr15_92688055_92689164
seq2: B6Ng01-090M01.g_67_1171

seq1  GAATTCAGTTAAGGGATCAAGAACCCACCATAGCTACACATAACTAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAAGGGATCAAGAACCCACCATAGCTACACATAACTAGCTT  50

seq1  CCTAAATATCCAATATTCAAAATAGTTTCCTTCATTTAATAGGCCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATATCCAATATTCAAAATAGTTTCCTTCATTTAATAGGCCTTTCT  100

seq1  CCAAGTCTCGTATGACTGTTGCAACAAATAACTATGAACTTAGAGTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTCGTATGACTGTTGCAACAAATAACTATGAACTTAGAGTTGAA  150

seq1  AACTTTAGTAAGGTCAAAGTTCATGCAAAATATATCTGCATCCTCACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAGTAAGGTCAAAGTTCATGCAAAATATATCTGCATCCTCACCAC  200

seq1  TTCATGGGTTGGACTGAATGTCCAAGCCATCCTACACTACATAGTGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGGTTGGACTGAATGTCCAAGCCATCCTACACTACATAGTGACAC  250

seq1  CAGTTTCAGAAACAACTAGGTCCATACACTTTAACGAGCTTCAGGACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCAGAAACAACTAGGTCCATACACTTTAACGAGCTTCAGGACTAG  300

seq1  TCAGTGAAAGATGTTTCCTGTAGGGGGAGATCAGCTCCCCTTACCAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAAAGATGTTTCCTGTAGGGGGAGATCAGCTCCCCTTACCAGCAG  350

seq1  TCACTGTGTACTTGTGAGGGCTATTCCTGGTTGTCAACTTGACTATATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGTACTTGTGAGGGCTATTCCTGGTTGTCAACTTGACTATATCT  400

seq1  GGAATGAACTCCAATCCAGAATTGGAGGGCTCACCTGTGATCCAGATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAACTCCAATCCAGAATTGGAGGGCTCACCTGTGATCCAGATCTT  450

seq1  GAAGCTGGAAGACACAAGTTTCTGACCTGAATCTTGACGTGGAAATCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGAAGACACAAGTTTCTGACCTGAATCTTGACGTGGAAATCTTG  500

seq1  AGGCAGTGGCTATGAACAGCTTAGGCTCAGGCAAGGTAGTACATTCCGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTGGCTATGAACAGCTTAGGCTCAGGCAAGGTAGTACATTCCGTT  550

seq1  AATGTACTTAAAGGAGACAGAGGCAAGCAGATCTCTGAGTTCCCGGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACTTAAAGGAGACAGAGGCAAGCAGATCTCTGAGTTCCCGGCCAG  600

seq1  CCTGGACAAAGCAAGCTTTAGATCCAGTCATGGTGGGACACACCTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACAAAGCAAGCTTTAGATCCAGTCATGGTGGGACACACCTTTCCT  650

seq1  CTGGGTCACATCTTCTGCTGGAGGATTACATGAGGACATTGGAAGAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCACATCTTCTGCTGGAGGATTACATGAGGACATTGGAAGAAGGA  700

seq1  AGATTCGCTCTTCTTCAACTGCTTGCACTTACTTGCCAACCTGTCTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCGCTCTTCTTCAACTGCTTGCACTTACTTGCCAACCTGTCTGTTG  750

seq1  GAATCTACTTCTACAGAAGGTCAGCTGAAACAACTAGCCTCCTGGGACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTACTTCTACAGAAGGTCAGCTGAAACAACTAGCCTCCTGGGACTG  800

seq1  AGCAACTCCTAGATCCTTGGACTTCTCATTCACAGCTGCCCATTGTTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTCCTAGATCCTTGGACTTCTCATTCACAGCTGCCCATTGTTGGG  850

seq1  TTAGTTGGACTGCAGACTATAAGTCATCACATTAAGTTCCCTCAATATAG  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTAGTTGGACTGCAGACTATAAGTCATCACATTAAGTTCCCTC-ATATAG  899

seq1  AGAGACATCCCATAATTTCTGTGACTCTAGAGAACCCTGACTAAGACAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATCCCATAATTTCTGTGACTCTAGAGAACCCTGACTAAGACAGT  949

seq1  ACTCAACTGTTGGGAGCCATTTTGTCTGCTTCTGTGACAGCCTG-TCTGT  999
      ||||||||| |||||||||||||||||||||||||||||||||| | |||
seq2  ACTCAACTG-TGGGAGCCATTTTGTCTGCTTCTGTGACAGCCTGTTTTGT  998

seq1  GAAGCAGAGGCAAATCAGGGTCTACTGGCAGATTTCCTGACCTAGTGAGG  1049
      |||||||| |||||||| |||||||| ||||||||||||||||||||| |
seq2  GAAGCAGA-GCAAATCA-GGTCTACT-GCAGATTTCCTGACCTAGTGA-G  1044

seq1  CATGGAACCATAAGAGGGGATACCCTTGGAGCTCAAGGTAATTAA-TGTT  1098
      ||||||||||||||| |||||||||||||||||||| |||||||| ||||
seq2  CATGGAACCATAAGAAGGGATACCCTTGGAGCTCAAAGTAATTAATTGTT  1094

seq1  CTGTTAATCTCG  1110
      ||||| ||||||
seq2  CTGTT-ATCTCG  1105