BAC Information

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BAC

Clone NameB6Ng01-093L13
Chromosome15 (Build37)
Map Location 76,992,441 - 77,110,305
singlet/doubletdoublet
Overlap geneRbm9
Upstream genePlec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6
Downstream geneLOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093L13.bB6Ng01-093L13.g
ACCDH905131DH905132
length1,151935
definitionDH905131|Mus musculus domesticus DNA, BAC clone: B6Ng01-093L13, 5' end.DH905132|Mus musculus domesticus DNA, BAC clone: B6Ng01-093L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,992,441 - 76,993,603)(77,109,363 - 77,110,305)
sequence
gaattcaaaaaatcaataaaaatgaagttatgtgagcatagctgtgtaga
ataactaccctagctggagccagaatccaggacgcttctccatttattcc
ccatactgttgccaattgaaaggcacttatacaatgtaatatgctttata
atggcttaaccttttctggttctgtattttaacaacttaacaatgaaaat
gtcactaattctaccacagaataattggaaatggtaggctaaaaccagat
taaaatagtctaggcatggcctgatttatgtattacctttctgaaaaata
cagttacatttggacactgccacctgaacctctcagttgcctccagagat
cctcaagtttattctatcatggaggcatggtaaatacatttatattgccc
agcctatcgtgcacccacattctctgaagcgtcagaatttctaatactga
aaagctaaccacttctgtctagttattcaacactattaaaataaaatctt
ttgctacagcaaattagaaaaaaaaattctcgagaagttcggcccaaatg
tacaatgtcacatgagaggaaacctgtactcataaaatcataaaatgttc
acgtcaatcaaatattgtttgtaaaacgagtcataacccagcttacctgg
acaagaggatactgataatccatgcaatatacaccatacatagcagaggg
agagactccagatctggacggcacagaaagcacctcaagtttttgtctag
tctgacgtgtcctgtccaagggaactagaagcaccttcaaaaaaaaaaaa
ttcccccactttccctgtctacacagacaggtgtgctggctcagctggtg
aagtcacaggttagttcagagcaacaggattcagtagtacatacaagaga
tgttaaaaaaaaaaaaagcaaaatattccaactaagttagctgtacacgc
taaagacagtgctagggattagttttaactgacagctccaccagaaatgc
aagaggcagaagatgatagccagggaagaggcctctggctccttaaagca
caacagggcagagtgcagcatccaaggcctgaagtgttaacgtccaggct
tggttgtcaaggaaagctctccagcctagacattgaagcaatgggactgt
a
gaattcaccccctcctcccattctcaccagatgggggatcatgggcgaca
cactgaattcaccccctcctcccactctcaccagatggggggggatcatg
ggtgacacactgaattcaccccctcctcccgctctcaccagatgggatca
tgggtgacacactgaattcaccccctcctcccactctcaccagatggggg
atcatgggtgacacactgaattcaccccctcctcccactctcaccagatg
ggggatcatgggtgacacactgaattcgccccctcctcccgctctcacca
gatgggatcatgggtgacacactgaattcaccccttcctcctgctctcat
cagatgggggatcatgggtgacacactgaatccaccccctcctctcgctc
tcaccagatgggatcatgggtgacacactgaattcaccccctcctcctgc
tctcaccagatgggatcatgggtgacacactgaatttaccccctcctccc
actctcaccagatgggggatcatgggtgacacactgaattcaccccctcc
tcccactctcaccagatgggggatcatgggtgacacactgaaattcaccc
cctcctccccgctctcaccagatgggatcatgggtgacacactgaattta
cccctttcctcctgctctcatcagatggggggatcatgggtggacacact
gaattcaccccctcctcccgctctcaccagatgggatatgggtgacacac
tgaatttaccccctcctcccgctctcactgcaattgatctcactgcagat
gtttccaactggcttctgcagtttgtccaaggcccttgggatgggtgcag
tgactacacagcgggctttttcctgtcatgtctgagtgagaacaaggaga
tgcgcaaaggtgatttggcacactataggattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_76992441_76993603
seq2: B6Ng01-093L13.b_49_1199

seq1  GAATTCAAAAAATCAATAAAAATGAAGTTATGTGAGCATAGCTGTGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAAATCAATAAAAATGAAGTTATGTGAGCATAGCTGTGTAGA  50

seq1  ATAACTACCCTAGCTGGAGCCAGAATCCAGGACGCTTCTCCATTTATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTACCCTAGCTGGAGCCAGAATCCAGGACGCTTCTCCATTTATTCC  100

seq1  CCATACTGTTGCCAATTGAAAGGCACTTATACAATGTAATATGCTTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTGTTGCCAATTGAAAGGCACTTATACAATGTAATATGCTTTATA  150

seq1  ATGGCTTAACCTTTTCTGGTTCTGTATTTTAACAACTTAACAATGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTAACCTTTTCTGGTTCTGTATTTTAACAACTTAACAATGAAAAT  200

seq1  GTCACTAATTCTACCACAGAATAATTGGAAATGGTAGGCTAAAACCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAATTCTACCACAGAATAATTGGAAATGGTAGGCTAAAACCAGAT  250

seq1  TAAAATAGTCTAGGCATGGCCTGATTTATGTATTACCTTTCTGAAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGTCTAGGCATGGCCTGATTTATGTATTACCTTTCTGAAAAATA  300

seq1  CAGTTACATTTGGACACTGCCACCTGAACCTCTCAGTTGCCTCCAGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACATTTGGACACTGCCACCTGAACCTCTCAGTTGCCTCCAGAGAT  350

seq1  CCTCAAGTTTATTCTATCATGGAGGCATGGTAAATACATTTATATTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGTTTATTCTATCATGGAGGCATGGTAAATACATTTATATTGCCC  400

seq1  AGCCTATCGTGCACCCACATTCTCTGAAGCGTCAGAATTTCTAATACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATCGTGCACCCACATTCTCTGAAGCGTCAGAATTTCTAATACTGA  450

seq1  AAAGCTAACCACTTCTGTCTAGTTATTCAACACTATTAAAATAAAATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAACCACTTCTGTCTAGTTATTCAACACTATTAAAATAAAATCTT  500

seq1  TTGCTACAGCAAATTAGAAAAAAAAATTCTCGAGAAGTTCGGCCCAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACAGCAAATTAGAAAAAAAAATTCTCGAGAAGTTCGGCCCAAATG  550

seq1  TACAATGTCACATGAGAGGAAACCTGTACTCATAAAATCATAAAATGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGTCACATGAGAGGAAACCTGTACTCATAAAATCATAAAATGTTC  600

seq1  ACGTCAATCAAATATTGTTTGTAAAACGAGTCATAACCCAGCTTACCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAATCAAATATTGTTTGTAAAACGAGTCATAACCCAGCTTACCTGG  650

seq1  ACAAGAGGATACTGATAATCCATGCAATATACACCATACATAGCAGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGATACTGATAATCCATGCAATATACACCATACATAGCAGAGGG  700

seq1  AGAGACTCCAGATCTGGACGGCACAGAAAGCACCTCAAGTTTTTGTCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCCAGATCTGGACGGCACAGAAAGCACCTCAAGTTTTTGTCTAG  750

seq1  TCTGACGTGTCCTGTCCAAGGGAACTAGAAGCACCTTCAAAAAAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACGTGTCCTGTCCAAGGGAACTAGAAGCACCTTCAAAAAAAAAAAA  800

seq1  TTCCCCCACTTTCCCTGTCTACACAGACAGGTGTGCTGGCTCAGCTGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCACTTTCCCTGTCTACACAGACAGGTGTGCTGGCTCAGCTGGTG  850

seq1  AAGTCACAGGTTAGTTCAGAGCAACAGGATTCAGTAGTACATACAAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACAGGTTAGTTCAGAGCAACAGGATTCAGTAGTACATACAAGAGA  900

seq1  TGTTAAAAAAAAAAAAAGCAAAATATTCCAACTAAGTTAGCTGTACACGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAAAAAAAAAAAGCAAAATATTCCAACTAAGTTAGCTGTACACGC  950

seq1  TAAAGACAGTGCTAGGGATTAGTTTTTAACTGACAGCTCCACCAGAAAGG  1000
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  TAAAGACAGTGCTAGGGATTAG-TTTTAACTGACAGCTCCACCAGAAATG  999

seq1  CAAGAGGCAGAAGATGATAGCCAGGGAAGAGGCCTCTGGCTCCTTAAAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGCAGAAGATGATAGCCAGGGAAGAGGCCTCTGGCTCCTTAAAGC  1049

seq1  AACAAACAAGGGCAGAAGTGCAAGGCATCC-AGAGCTGAAGTGCTATAAC  1099
       ||||   ||||||| ||||||  |||||| ||  ||||||||   ||||
seq2  -ACAA--CAGGGCAG-AGTGCA--GCATCCAAGGCCTGAAGTG--TTAAC  1091

seq1  GTCCCAGGC-TGTGTGTCAAAGGGAAAGCTC-CCAGCCTAGGACATTGGA  1147
      || |||||| ||  ||||||  ||||||||| |||||||| ||||||| |
seq2  GT-CCAGGCTTGGTTGTCAA--GGAAAGCTCTCCAGCCTA-GACATTGAA  1137

seq1  GGCAAATGGGACTGTA  1163
      |   ||||||||||||
seq2  G--CAATGGGACTGTA  1151

seq1: chr15_77109363_77110305
seq2: B6Ng01-093L13.g_70_1004 (reverse)

seq1  AAAAATCCACTATAGTGTACCCAACTCACCCTTTGCCGCCTCCTCCATCG  50
      |||||||  |||||||||  |||| ||| |||||| ||| | |||| |  
seq2  AAAAATC--CTATAGTGT-GCCAAATCA-CCTTTG-CGCAT-CTCCTT--  42

seq1  TTTCTACATTCAGACCATGACAGGAAAAAGCCCAGCTGTGTTAGTCACTG  100
       |||| || ||||| |||||||||||||||||| |||||| |||||||||
seq2  GTTCT-CACTCAGA-CATGACAGGAAAAAGCCC-GCTGTG-TAGTCACTG  88

seq1  CAGCCATCCCAAGGGCCCTGGGCAAAACGCAGAAGCCAGCTGGAAACAGC  150
      || |||||||||||||| ||| ||||  ||||||||||| |||||||| |
seq2  CACCCATCCCAAGGGCCTTGGACAAACTGCAGAAGCCAGTTGGAAACATC  138

seq1  TGCAGTGAGATCAACTGCAGTGAGAGCGGGAGGAGGGGGTAAATTCAGTG  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAGATCAATTGCAGTGAGAGCGGGAGGAGGGGGTAAATTCAGTG  188

seq1  TGTCACCCATGATCCCATCTGGTGAGAGCGGGAGGAGGGGGTGGATTCAG  250
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  TGTCACCCAT-ATCCCATCTGGTGAGAGCGGGAGGAGGGGGTGAATTCAG  237

seq1  TGTGT-CACCCATGAT-CCCCCATCTGATGAGAGCAGGAGG-AAGGGGTG  297
      ||||| |||||||||| |||||||||||||||||||||||| ||||||| 
seq2  TGTGTCCACCCATGATCCCCCCATCTGATGAGAGCAGGAGGAAAGGGGTA  287

seq1  AATTCAGTGTGTCACCCATGATCCCATCTGGTGAGAGC-GGGAGGAGGGG  346
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATTCAGTGTGTCACCCATGATCCCATCTGGTGAGAGCGGGGAGGAGGGG  337

seq1  GTGAA-TTCAGTGTGTCACCCATGATCCCCCATCTGGTGAGAGTGGGAGG  395
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTTCAGTGTGTCACCCATGATCCCCCATCTGGTGAGAGTGGGAGG  387

seq1  AGGGGGTGAATTCAGTGTGTCACCCATGATCCCCCATCTGGTGAGAGTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGAATTCAGTGTGTCACCCATGATCCCCCATCTGGTGAGAGTGG  437

seq1  GAGGAGGGGGTAAATTCAGTGTGTCACCCATGATCCCATCTGGTGAGAGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGGGTAAATTCAGTGTGTCACCCATGATCCCATCTGGTGAGAGC  487

seq1  AGGAGGAGGGGGTGAATTCAGTGTGTCACCCATGATCCCATCTGGTGAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGGGGTGAATTCAGTGTGTCACCCATGATCCCATCTGGTGAGA  537

seq1  GCGAGAGGAGGGGGTGGATTCAGTGTGTCACCCATGATCCCCCATCTGAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAGGAGGGGGTGGATTCAGTGTGTCACCCATGATCCCCCATCTGAT  587

seq1  GAGAGCAGGAGGAAGGGGTGAATTCAGTGTGTCACCCATGATCCCATCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGGAGGAAGGGGTGAATTCAGTGTGTCACCCATGATCCCATCTG  637

seq1  GTGAGAGCGGGAGGAGGGGGCGAATTCAGTGTGTCACCCATGATCCCCCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGCGGGAGGAGGGGGCGAATTCAGTGTGTCACCCATGATCCCCCA  687

seq1  TCTGGTGAGAGTGGGAGGAGGGGGTGAATTCAGTGTGTCACCCATGATCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGAGAGTGGGAGGAGGGGGTGAATTCAGTGTGTCACCCATGATCC  737

seq1  CCCATCTGGTGAGAGTGGGAGGAGGGGGTGAATTCAGTGTGTCACCCATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGGTGAGAGTGGGAGGAGGGGGTGAATTCAGTGTGTCACCCATG  787

seq1  ATCCCATCTGGTGAGAGCGGGAGGAGGGGGTGAATTCAGTGTGTCACCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATCTGGTGAGAGCGGGAGGAGGGGGTGAATTCAGTGTGTCACCCA  837

seq1  TGATCCCCCCCCATCTGGTGAGAGTGGGAGGAGGGGGTGAATTCAGTGTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCCCCCCATCTGGTGAGAGTGGGAGGAGGGGGTGAATTCAGTGTG  887

seq1  TCGCCCATGATCCCCCATCTGGTGAGAATGGGAGGAGGGGGTGAATTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCATGATCCCCCATCTGGTGAGAATGGGAGGAGGGGGTGAATTC  935