BAC Information

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BAC

Clone NameB6Ng01-093M05
Chromosome15 (Build37)
Map Location 82,122,569 - 82,205,346
singlet/doubletdoublet
Overlap geneSept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22
Upstream geneSlc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik
Downstream geneLOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093M05.bB6Ng01-093M05.g
ACCDH905156DH905157
length1,144721
definitionDH905156|Mus musculus domesticus DNA, BAC clone: B6Ng01-093M05, 5' end.DH905157|Mus musculus domesticus DNA, BAC clone: B6Ng01-093M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,122,569 - 82,123,737)(82,204,627 - 82,205,346)
sequence
gaattcagttatagagaagatgactaggaaagccagtttctgcagctgac
cactgaaatttgctctgacttgggaatagcctggggaaatgggagaattt
ggtagcttgggctgctctgggtgttctgttcaagaagcacatctattggg
caaatgaggcaaactttaggtggaggaaattatattcacaaactaattct
gaagaatcggaaaaaatatacagagtttcttaggcggctggacttgtgag
acaaactaacacagtttcccgttttctagcagccttctgtccatgttaag
ctggcttctctgtggctttgtttcttacaaacccaactcactctttctct
gttctcatttgtctgtctgtctttctcggcttctcccctccctgcattct
ctcaccatccaatcctgtagatgttcccaggaatacccacagccatacat
ttagccttctcttgccttctcaggagccttgtatttattaatgcatactt
taactgctccttgcacattcaagttttttttttttccctacagtttctaa
ggctgctttaaggaaagccatttagccataggaaagggaagataccacaa
aattctgtttagaactgatctatccactatgccacctcccggtccagcct
gggtgtagaactggtcttcactgacttcagccctttattacccagtcact
aggaaaacaaacacacagacaaacaaaaaacaaaaagagatggaagaccc
acaattcagtggaccaagcagaagtggtcctaatcctatggtcttagcct
ttcctggagactgctctgtctctagtcctcatctataacgtcactaaaga
gtggccagctgtcagctagagtggtagcaacatagagctcgctgacagct
ctagtgagctgccctgtatggtgacatgggattgggcacctacggccagc
aagggataagatggtgggtgttgagagtctaagtaggagaatgctgctgt
ctccactaagctgtgtctcacttctcctggagagctgtttatgtgtctgc
tgcgctgcgtcttcaacctcaccgttcccactccccctgcaggaagctcc
tgggacatgttctttcacctgtaccagcaccctgccactgctga
gaattcaattccctcttctgatgtgtctggagatagcaccaatgtattca
tatacattaagtctttttataaaaaaaaaaaaaaagggggggtggagagg
ccatgatcctaaacaggtgtttctgtcaggaaatcaaagctgagagatgg
gaaatgccggcctccatccttttgctgtttcagattctcagactccctta
catctgtgagccttagtttcttcatctagacatggggatgctagtgggac
cagctggcagatgtgtgacagacactagcaaggtcatgatgaggtgattg
acagagtccaaggtggttccccagacaaatagtagcagatgccaaccttc
tgtggtgctcaccctgggtctcccctgccaagtcctatccggtacagcta
agtgcaggaatccaggcttgcccgtaatgcattctccttgcctacagctg
cggggtcgctatggggacctgttcagcctacagctggcctctgagtcagt
ggttgtactaaatgggctgacggccctgcgagaggcactggtgaaacaca
gcgaggacactgctgaccggccaccgctgcatttcaatgacctgctgggc
tttggaccacgctctcaaggcaaatgcagacagtggcgggagtggtgggc
aaatgggcactagagagagtttggggattggaggcactctgggacctaat
tgaggtgggggggggggggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_82122569_82123737
seq2: B6Ng01-093M05.b_47_1190

seq1  GAATTCAGTTATAGAGAAGATGACTAGGAAAGCCAGTTTCTGCAGCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTATAGAGAAGATGACTAGGAAAGCCAGTTTCTGCAGCTGAC  50

seq1  CACTGAAATTTGCTCTGACTTGGGAATAGCCTGGGGAAATGGGAGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAATTTGCTCTGACTTGGGAATAGCCTGGGGAAATGGGAGAATTT  100

seq1  GGTAGCTTGGGCTGCTCTGGGTGTTCTGTTCAAGAAGCACATCTATTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTTGGGCTGCTCTGGGTGTTCTGTTCAAGAAGCACATCTATTGGG  150

seq1  CAAATGAGGCAAACTTTAGGTGGAGGAAATTATATTCACAAACTAATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGGCAAACTTTAGGTGGAGGAAATTATATTCACAAACTAATTCT  200

seq1  GAAGAATCGGAAAAAATATACAGAGTTTCTTAGGCGGCTGGACTTGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATCGGAAAAAATATACAGAGTTTCTTAGGCGGCTGGACTTGTGAG  250

seq1  ACAAACTAACACAGTTTCCCGTTTTCTAGCAGCCTTCTGTCCATGTTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTAACACAGTTTCCCGTTTTCTAGCAGCCTTCTGTCCATGTTAAG  300

seq1  CTGGCTTCTCTGTGGCTTTGTTTCTTACAAACCCAACTCACTCTTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCTCTGTGGCTTTGTTTCTTACAAACCCAACTCACTCTTTCTCT  350

seq1  GTTCTCATTTGTCTGTCTGTCTTTCTCGGCTTCTCCCCTCCCTGCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATTTGTCTGTCTGTCTTTCTCGGCTTCTCCCCTCCCTGCATTCT  400

seq1  CTCACCATCCAATCCTGTAGATGTTCCCAGGAATACCCACAGCCATACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATCCAATCCTGTAGATGTTCCCAGGAATACCCACAGCCATACAT  450

seq1  TTAGCCTTCTCTTGCCTTCTCAGGAGCCTTGTATTTATTAATGCATACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTTCTCTTGCCTTCTCAGGAGCCTTGTATTTATTAATGCATACTT  500

seq1  TAACTGCTCCTTGCACATTCAAGTTTTTTTTTTTTCCCTACAGTTTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTCCTTGCACATTCAAGTTTTTTTTTTTTCCCTACAGTTTCTAA  550

seq1  GGCTGCTTTAAGGAAAGCCATTTAGCCATAGGAAAGGGAAGATACCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTTTAAGGAAAGCCATTTAGCCATAGGAAAGGGAAGATACCACAA  600

seq1  AATTCTGTTTAGAACTGATCTATCCACTATGCCACCTCCCGGTCCAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTTTAGAACTGATCTATCCACTATGCCACCTCCCGGTCCAGCCT  650

seq1  GGGTGTAGAACTGGTCTTCACTGACTTCAGCCCTTTATTACCCAGTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAGAACTGGTCTTCACTGACTTCAGCCCTTTATTACCCAGTCACT  700

seq1  AGGAAAACAAACACACAGACAAACAAAAAACAAAAAGAGATGGAAGACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACAAACACACAGACAAACAAAAAACAAAAAGAGATGGAAGACCC  750

seq1  ACAATTCAGTGGACCAAGCAGAAGTGGTCCTAATCCTATGGTCTTAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCAGTGGACCAAGCAGAAGTGGTCCTAATCCTATGGTCTTAGCCT  800

seq1  TTCCTGGAGACTGCTCTGTCTCTAGTCCTCATCTATAACGTCACTAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAGACTGCTCTGTCTCTAGTCCTCATCTATAACGTCACTAAAGA  850

seq1  GTGGCCAGCTGTCAGGCTAGAGTGGTAGCAACATAGAGCTCGCTGACAGC  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGGCCAGCTGTCA-GCTAGAGTGGTAGCAACATAGAGCTCGCTGACAGC  899

seq1  TCTAGTGAGCTGCCCTGTATGGTGACATGGGATTGGGCACCTAGGGCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTAGTGAGCTGCCCTGTATGGTGACATGGGATTGGGCACCTACGGCCAG  949

seq1  CAAGGGATAAGAATGGTGGGTGTTGGAGAGTCTAAGTAGGAGAATGCTGC  1000
      ||||||||||| |||||||||||| |||||||||||||||||||||||| 
seq2  CAAGGGATAAG-ATGGTGGGTGTT-GAGAGTCTAAGTAGGAGAATGCTG-  996

seq1  CTGTCTCCACTAAGCTGTGGTCTCACTCTCCCTGGAGAAGCTGTTTTATG  1050
      |||||||||||||||||| ||||||||   ||||||| ||||| ||||||
seq2  CTGTCTCCACTAAGCTGT-GTCTCACTTCTCCTGGAG-AGCTG-TTTATG  1043

seq1  TGTCTGCTGCCGGCTGCCGGTCTCCACACCCTCAACCGTTCTCAACTCCC  1100
      ||||||||||  |||||  ||||   || |||| ||||||| | ||||||
seq2  TGTCTGCTGC--GCTGC--GTCT--TCAACCTC-ACCGTTC-CCACTCCC  1085

seq1  CCTGCAGGGAGAAGGCCTCCTGGGCACTGTCCTTCCACCTGTACCAGCCA  1150
      |||||||| ||     ||||||||   ||| ||| ||||||||||||   
seq2  CCTGCAGGAAG-----CTCCTGGGACATGTTCTTTCACCTGTACCAG---  1127

seq1  CCCCCTGCCCCACTGCTGA  1169
      | |||||  ||||||||||
seq2  CACCCTG--CCACTGCTGA  1144

seq1: chr15_82204627_82205346
seq2: B6Ng01-093M05.g_70_790 (reverse)

seq1  GT-CCCCCCCCCCCCACCTCAATTAGGTCCCAGAGTGCCTCCAATCCCCA  49
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCCCCCCCCCACCTCAATTAGGTCCCAGAGTGCCTCCAATCCCCA  50

seq1  AACTCTCTCTAGTGCCCATTTGCCCACCACTCCCGCCACTGTCTGCATTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTCTAGTGCCCATTTGCCCACCACTCCCGCCACTGTCTGCATTT  100

seq1  GCCTTGAGAGCGTGGTCCAAAGCCCAGCAGGTCATTGAAATGCAGCGGTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAGAGCGTGGTCCAAAGCCCAGCAGGTCATTGAAATGCAGCGGTG  150

seq1  GCCGGTCAGCAGTGTCCTCGCTGTGTTTCACCAGTGCCTCTCGCAGGGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGTCAGCAGTGTCCTCGCTGTGTTTCACCAGTGCCTCTCGCAGGGCC  200

seq1  GTCAGCCCATTTAGTACAACCACTGACTCAGAGGCCAGCTGTAGGCTGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCCATTTAGTACAACCACTGACTCAGAGGCCAGCTGTAGGCTGAA  250

seq1  CAGGTCCCCATAGCGACCCCGCAGCTGTAGGCAAGGAGAATGCATTACGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCCCATAGCGACCCCGCAGCTGTAGGCAAGGAGAATGCATTACGG  300

seq1  GCAAGCCTGGATTCCTGCACTTAGCTGTACCGGATAGGACTTGGCAGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCTGGATTCCTGCACTTAGCTGTACCGGATAGGACTTGGCAGGGG  350

seq1  AGACCCAGGGTGAGCACCACAGAAGGTTGGCATCTGCTACTATTTGTCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGGGTGAGCACCACAGAAGGTTGGCATCTGCTACTATTTGTCTG  400

seq1  GGGAACCACCTTGGACTCTGTCAATCACCTCATCATGACCTTGCTAGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCACCTTGGACTCTGTCAATCACCTCATCATGACCTTGCTAGTGT  450

seq1  CTGTCACACATCTGCCAGCTGGTCCCACTAGCATCCCCATGTCTAGATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACACATCTGCCAGCTGGTCCCACTAGCATCCCCATGTCTAGATGA  500

seq1  AGAAACTAAGGCTCACAGATGTAAGGGAGTCTGAGAATCTGAAACAGCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTAAGGCTCACAGATGTAAGGGAGTCTGAGAATCTGAAACAGCAA  550

seq1  AAGGATGGAGGCCGGCATTTCCCATCTCTCAGCTTTGATTTCCTGACAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGAGGCCGGCATTTCCCATCTCTCAGCTTTGATTTCCTGACAGA  600

seq1  AACACCTGTTTAGGATCATGGCCTCTCCACCCCCCCTTTTTTTTTTTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTGTTTAGGATCATGGCCTCTCCACCCCCCCTTTTTTTTTTTTTT  650

seq1  TATAAAAAGACTTAATGTATATGAATACATTGGTGCTATCTCCAGACACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAAGACTTAATGTATATGAATACATTGGTGCTATCTCCAGACACA  700

seq1  TCAGAAGAGGGAATTGAATTC  720
      |||||||||||||||||||||
seq2  TCAGAAGAGGGAATTGAATTC  721