BAC Information

Click to search

BAC

Clone NameB6Ng01-094P12
Chromosome15 (Build37)
Map Location 45,537,944 - 45,539,068
singlet/doubletsinglet
Overlap genenone
Upstream gene5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
Downstream geneLOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094P12.bB6Ng01-094P12.g
ACCDH906036DH906037
length8061,118
definitionDH906036|Mus musculus domesticus DNA, BAC clone: B6Ng01-094P12, 5' end.DH906037|Mus musculus domesticus DNA, BAC clone: B6Ng01-094P12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctagaaagttttttctttctttctttctttgtttctttgatccag
tgatcatttactagatagttgtttacttgtagtgagtttgtaggcttttt
gttgctttggttgttgttgaattcattgttgtcttataagatacaaggag
ttctttcagttttgttgtaactgttaaggattgctttgtgaccaactata
cgatcaatttttaagggtgttccatgaggtcctgagaagatattctttta
tgtttgggtgaaataatctgtagatatctgttaggtacatttaattcata
aactctgttagtttcattatctctctagttcctgtctcaatgtcccattg
gtgagaatggggtgttaaagtttcccactattagtgtatgatttaagctt
tagtagtgtttcttttacaaatgtgaatgtcctgcatttggggcatagat
attcagaactgatatgtcaccttggcgaatttttcactgatgcttatgac
atgccctgcaccatctcttttgattaaatttgtttgaaagtctattttat
taaatattagaattgacactctagcatgcatcttgcatctatttgcttgg
agaacctttttccagttgtaatcagaggtaatatttatctgtgttcctga
gatatgtttctagcatgtagcacagtaaaggatcctgttttctcatccag
tatcttagtctgaatctttttattgggtattgagtacattgatgttgaga
gatatttatgaccagcagttttaaatttcagttattttgatggtggttgg
gttagt

gaattcactttggtttatgtatattgctatctcacggtctcatttaagtt
aataacatcaaataatattaatatcttaagacacttccatttttgtaaat
ctgaacttgtgtttaagtccctgagttattgttttaaggtatataatatt
aggtgataaaaatgtttagaattgatgacatgtgttttatatggcaagaa
tatttcatattttagagagattaaaatctttactgttgggagctattaag
acaactctattgtcttgatctctgaattgggcctctccccccaagaagaa
aagggggtcaaaagcgggccactgacgcaccattccaagaacaaccacaa
tatgttctggccctaagtcagcgccagatgtcctgaccacaagatgtacc
ctgatatcaccaagttcctgcttccacgtggtgtagttgccaaaagaaaa
atatccctgccccatccctcctgctgagaagtatttcctcttttgcttgt
gcatccctcctgctgaaagtacttcctcttttgcttgtgcatttaagcct
tgagccttgctgaatacagtgacaccttgatgctactcagactgcttccg
ccatgtcgttcctgcacttggtgtccatctctctctctccccatttggtt
cttaggagaaggtcccctcgagaccctcgagtaactggacctgctggaca
ggtcactgtacattgatagtatacattaattacatacatgatttttaatt
tcttcatttcttcttgcttgtagtttaaactgctactaacacagtcattc
ctcttattaaacagcaaccatttcacaatattgctaatacttaaaaccag
gaaagtattcttgattattttcaatccaataccttttattttaatatatg
agctaactttatgttttaattttagaaattattatagtatttatttttat
tgtaagaataaagagcatacaaaagtttcttaaagcatactactaatttg
tatccattagatttgagtttatagtgattaagctgtccattctactaatt
agaaacagaatgcctttgaaaataaatacctctaagaatatctatctcat
ctaccacatttaataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_45537944_45539068
seq2: B6Ng01-094P12.g_69_1186 (reverse)

seq1  ATTTATTTAAATGTGGTAGAATGAGATTAGATATTCTTAGA-GTATTTAT  49
      ||||| ||||||||||||| |||||| |||||||||||||| ||||||||
seq2  ATTTA-TTAAATGTGGTAG-ATGAGA-TAGATATTCTTAGAGGTATTTAT  47

seq1  TTTCAAAGGCATTCTGTTTCT-ATTAGTAGAATGGACAGCTTAATCAACT  98
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  TTTCAAAGGCATTCTGTTTCTAATTAGTAGAATGGACAGCTTAATC-ACT  96

seq1  ATAAACTCAAAATTCTAATGGATACAAATTAGTAGTATGCTTTAAGAAAC  148
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCAAA--TCTAATGGATACAAATTAGTAGTATGCTTTAAGAAAC  144

seq1  TTTTTGTATGCTCTTTATTCTTACAATAAAAATAAATACTATAATAATTT  198
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  -TTTTGTATGCTCTTTATTCTTACAATAAAAATAAATACTATAATAA-TT  192

seq1  TCTAAAATTAAAAACATAAAGTTAGCTCATATATTAAAATAAAAGGTATT  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATT-AAAACATAAAGTTAGCTCATATATTAAAATAAAAGGTATT  241

seq1  GGATTGAAAATAATCAAGAATACTTTCCTGGTTTTAAGTATTAGCAATAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAAAATAATCAAGAATACTTTCCTGGTTTTAAGTATTAGCAATAT  291

seq1  TGTGAAATGGTTGCTGTTTAATAAGAGGAATGACTGTGTTAGTAGCAGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATGGTTGCTGTTTAATAAGAGGAATGACTGTGTTAGTAGCAGTT  341

seq1  TAAACTACAAGCAAGAAGAAATGAAGAAATTAAAAATCATGTATGTAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTACAAGCAAGAAGAAATGAAGAAATTAAAAATCATGTATGTAATT  391

seq1  AATGTATACTATCAATGTACAGTGACCTGTCCAGCAGGTCCAGTTACTCG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATACTATCAATGTACAGTGACCTGTCCAGCAGGTCCAGTTACTCG  441

seq1  AGGGTCTCGAGGGGACCTTCTCCTAAGAACCAAATGGGGAGAGAGAGAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCGAGGGGACCTTCTCCTAAGAACCAAATGGGGAGAGAGAGAGA  491

seq1  TGGACACCAAGTGCAGGAACGACATGGCGGAAGCAGTCTGAGTAGCATCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACCAAGTGCAGGAACGACATGGCGGAAGCAGTCTGAGTAGCATCA  541

seq1  AGGTGTCACTGTATTCAGCAAGGCTCAAGGCTTAAATGCACAAGCAAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCACTGTATTCAGCAAGGCTCAAGGCTTAAATGCACAAGCAAAAG  591

seq1  AGGAAGTACTTTCAGCAGGAGGGATGCACAAGCAAAAGAGGAAATACTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTACTTTCAGCAGGAGGGATGCACAAGCAAAAGAGGAAATACTTC  641

seq1  TCAGCAGGAGGGATGGGGCAGGGATATTTTTCTTTTGGCAACTACACCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGAGGGATGGGGCAGGGATATTTTTCTTTTGGCAACTACACCAC  691

seq1  GTGGAAGCAGGAACTTGGTGATATCAGGGTACATCTTGTGGTCAGGACAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGCAGGAACTTGGTGATATCAGGGTACATCTTGTGGTCAGGACAT  741

seq1  CTGGCGCTGACTTAGGGCCAGAACATATTGTGGTTGTTCTTGGAATGGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGCTGACTTAGGGCCAGAACATATTGTGGTTGTTCTTGGAATGGTG  791

seq1  CGTCAGTGGCCCGCTTTTGACCCCCTTTTCTTCTTGGGGGGAGAGGCCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGTGGCCCGCTTTTGACCCCCTTTTCTTCTTGGGGGGAGAGGCCCA  841

seq1  ATTCAGAGATCAAGACAATAGAGTTGTCTTAATAGCTCCCAACAGTAAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGATCAAGACAATAGAGTTGTCTTAATAGCTCCCAACAGTAAAG  891

seq1  ATTTTAATCTCTCTAAAATATGAAATATTCTTGCCATATAAAACACATGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATCTCTCTAAAATATGAAATATTCTTGCCATATAAAACACATGT  941

seq1  CATCAATTCTAAACATTTTTATCACCTAATATTATATACCTTAAAACAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTCTAAACATTTTTATCACCTAATATTATATACCTTAAAACAAT  991

seq1  AACTCAGGGACTTAAACACAAGTTCAGATTTACAAAAATGGAAGTGTCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGGACTTAAACACAAGTTCAGATTTACAAAAATGGAAGTGTCTT  1041

seq1  AAGATATTAATATTATTTGATGTTATTAACTTAAATGAGACCGTGAGATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTAATATTATTTGATGTTATTAACTTAAATGAGACCGTGAGATA  1091

seq1  GCAATATACATAAACCAAAGTGAATTC  1125
      |||||||||||||||||||||||||||
seq2  GCAATATACATAAACCAAAGTGAATTC  1118


| Home | SequenceCutter | Blast | Download |