BAC Information

Click to search

BAC

Clone NameB6Ng01-096K01
Chromosome15 (Build37)
Map Location 77,387,050 - 77,549,337
singlet/doubletdoublet
Overlap gene9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679
Upstream geneAdck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik
Downstream gene2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096K01.bB6Ng01-096K01.g
ACCDH907226DH907227
length792637
definitionDH907226|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K01, 5' end.DH907227|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,387,050 - 77,387,839)(77,548,702 - 77,549,337)
sequence
gaattcacaagacagagaagagaacaagacatggagagaacccaggagtc
tgcaggagatctgctgtgagtgaagtacatgctgacacaggatagatgga
ggaggctagcccagactggaggatcaggcatttggaactactggggttca
gtatcttctgagccatggaggatgaaggaaaagggggaaggtcctacatg
ccaaagtgagaaaatttcctccttcagtgagcactgaggaggggataaat
gaaaaactaatagaaataaaaaaggaaaggccataactgcttctcggtat
ggtggaggaaaccatttactgtaggtaaaagggagagcatagccagaggt
gggacatctgggagaggccagagtggacatcaccctgatggggtaggcag
tgtaggctgaggggagagttaacagggaggagagagtggagccagctgca
gcagccaggaggcccaatgtacaaaaggggtgggtaaccaaaatggctgg
actatataaggaagattctgtgggggaagggcagctcagtccctgggctg
gagagttggggtagagggcagagtatgccagccatatcctgtaaagggta
gggaatgaaggatgctgggagaacctgataggcaggtctgctttgatctc
ttaaataggcccctaattccttttgtcctgggttttgagagttaacagaa
gcctgcataagatgagtccttgactaaataatttctcagatgctcatggg
aaaggagtagagagaggatctgggtgggtcaggttaaactgt
gaattcagtgtggggaggggtagggggattcctctgggagctgctatctt
gttatggttatttctctgagaaaagctaatattgttttggcagcttgtag
gctcagtcatttcgactgctaaaactgtttttacatttgtttagtcagcc
agcttccttaaatggctttgcacttagcctgttagtatagtttggaaagt
ccttttcgaagggggaaggtactgggtggtcttgaattaattttggatat
tacaattcttcccttcaccatcttctggatggcaatggaacaaggccatc
cctacactatagccagtgatggagaaggttaactctatgaatccacccac
aaagtttccagagtttttaaaaaaagtctacattttttccttgcatagct
ctgaatgagtcataggcaaaagtagggcagcaggcagaagggaggcgtga
acggtcaccgcgattgtccacttggctgaactgcaaggctgtatagagcc
tagaagggatacagtcagggactcccatgtgtgcatggctctgtccagca
cattccctcccccagtcctctgcactacactgaaggggaaatggtcactg
aatcatgctgttcatggaccctaatgagctcctgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_77387050_77387839
seq2: B6Ng01-096K01.b_43_834

seq1  GAATTCACAAGACAGAGAAGAGAACAAGACATGGAGAGAACCCAGGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGACAGAGAAGAGAACAAGACATGGAGAGAACCCAGGAGTC  50

seq1  TGCAGGAGATCTGCTGTGAGTGAAGTACATGCTGACACAGGATAGATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGATCTGCTGTGAGTGAAGTACATGCTGACACAGGATAGATGGA  100

seq1  GGAGGCTAGCCCAGACTGGAGGATCAGGCATTTGGAACTACTGGGGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTAGCCCAGACTGGAGGATCAGGCATTTGGAACTACTGGGGTTCA  150

seq1  GTATCTTCTGAGCCATGGAGGATGAAGGAAAAGGGGGAAGGTCCTACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTCTGAGCCATGGAGGATGAAGGAAAAGGGGGAAGGTCCTACATG  200

seq1  CCAAAGTGAGAAAATTTCCTCCTTCAGTGAGCACTGAGGAGGGGATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTGAGAAAATTTCCTCCTTCAGTGAGCACTGAGGAGGGGATAAAT  250

seq1  GAAAAACTAATAGAAATAAAAAAGGAAAGGCCATAACTGCTTCTCGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTAATAGAAATAAAAAAGGAAAGGCCATAACTGCTTCTCGGTAT  300

seq1  GGTGGAGGAAACCATTTACTGTAGGTAAAAGGGAGAGCATAGCCAGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGAAACCATTTACTGTAGGTAAAAGGGAGAGCATAGCCAGAGGT  350

seq1  GGGACATCTGGGAGAGGCCAGAGTGGACATCACCCTGATGGGGTAGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATCTGGGAGAGGCCAGAGTGGACATCACCCTGATGGGGTAGGCAG  400

seq1  TGTAGGCTGAGGGGAGAGTTAACAGGGAGGAGAGAGTGGAGCCAGCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCTGAGGGGAGAGTTAACAGGGAGGAGAGAGTGGAGCCAGCTGCA  450

seq1  GCAGCCAGGAGGCCCAATGTACAAAAGGGGTGGGTAACCAAAATGGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGGAGGCCCAATGTACAAAAGGGGTGGGTAACCAAAATGGCTGG  500

seq1  ACTATATAAGGAAGATTCTGTGGGGGAAGGGCAGCTCAGTCCCTGGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATAAGGAAGATTCTGTGGGGGAAGGGCAGCTCAGTCCCTGGGCTG  550

seq1  GAGAGTTGGGGTAGAGGGCAGAGTATGCCAGCCATATCCTGTAAAGGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTGGGGTAGAGGGCAGAGTATGCCAGCCATATCCTGTAAAGGGTA  600

seq1  GGGAATGAAGGATGCTGGGAGAACCTGATAGGCAGGTCTGCTTTGATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGAAGGATGCTGGGAGAACCTGATAGGCAGGTCTGCTTTGATCTC  650

seq1  TTAAATAGGCCCCTAA-TCCTTTTGTCCTGGGTTTTGAGAGTTAACAGAA  699
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTAAATAGGCCCCTAATTCCTTTTGTCCTGGGTTTTGAGAGTTAACAGAA  700

seq1  GCCTGCATAAGATGAGTCCTTGACTAAATAA-TTCTCAGATGCTCATGGG  748
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCCTGCATAAGATGAGTCCTTGACTAAATAATTTCTCAGATGCTCATGGG  750

seq1  AAAGGAGTAGAGAGAGGATCTGGGTGGGTCAGGTTGAACTGT  790
      ||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAGGAGTAGAGAGAGGATCTGGGTGGGTCAGGTTAAACTGT  792

seq1: chr15_77548702_77549337
seq2: B6Ng01-096K01.g_65_701 (reverse)

seq1  TTACAGGAGCTCATTCGGGTCCATG-ACAGCCTGATTCAGTGACCATTTC  49
      ||||||||||||||| ||||||||| ||||| ||||||||||||||||||
seq2  TTACAGGAGCTCATTAGGGTCCATGAACAGCATGATTCAGTGACCATTTC  50

seq1  CCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGAGC  100

seq1  CATGCACACATGGGAGTCCCTGACTGTATCCCTTCTAGGCTCTATACAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACACATGGGAGTCCCTGACTGTATCCCTTCTAGGCTCTATACAGC  150

seq1  CTTGCAGTTCAGCCAAGTGGACAATCGCGGTGACCGTTCACGCCTCCCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGTTCAGCCAAGTGGACAATCGCGGTGACCGTTCACGCCTCCCTT  200

seq1  CTGCCTGCTGCCCTACTTTTGCCTATGACTCATTCAGAGCTATGCAAGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCTGCCCTACTTTTGCCTATGACTCATTCAGAGCTATGCAAGGA  250

seq1  AAAAATGTAGACTTTTTTTAAGAACTCTGGAAACTTTGTGGGTGGATTCA  299
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAATGTAGACTTTTTTTAAAAACTCTGGAAACTTTGTGGGTGGATTCA  300

seq1  TAGAGTTAACCTTCTCCATCACTGGCTATAGTGTAGGGATGGCCTTGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTAACCTTCTCCATCACTGGCTATAGTGTAGGGATGGCCTTGTTC  350

seq1  CATTGCCATCCAGAAGATGGTGAAGGGAAGAATTGTAATATCCAAAATTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCATCCAGAAGATGGTGAAGGGAAGAATTGTAATATCCAAAATTA  400

seq1  ATTCAAGACCACCCAGTACCTTCCCCCTTCGAAAAGGACTTTCCAAACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGACCACCCAGTACCTTCCCCCTTCGAAAAGGACTTTCCAAACTA  450

seq1  TACTAACAGGCTAAGTGCAAAGCCATTTAAGGAAGCTGGCTGACTAAACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACAGGCTAAGTGCAAAGCCATTTAAGGAAGCTGGCTGACTAAACA  500

seq1  AATGTAAAAACAGTTTTAGCAGTCGAAATGACTGAGCCTACAAGCTGCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAAACAGTTTTAGCAGTCGAAATGACTGAGCCTACAAGCTGCCA  550

seq1  AAACAATATTAGCTTTTCTCAGAGAAATAACCATAACAAGATAGCAGCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATATTAGCTTTTCTCAGAGAAATAACCATAACAAGATAGCAGCTC  600

seq1  CCAGAGGAATCCCCCTACCCCTCCCCACACTGAATTC  636
      |||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAATCCCCCTACCCCTCCCCACACTGAATTC  637