BAC Information

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BAC

Clone NameB6Ng01-096P13
Chromosome15 (Build37)
Map Location 36,146,889 - 36,148,061
singlet/doubletsinglet
Overlap geneSpag1
Upstream geneOsr2, Vps13b, EG666183, Cox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k
Downstream geneRnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz, Zfp706, LOC670911, LOC667492, LOC100041288
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P13.bB6Ng01-096P13.g
ACCDH907468DH907469
length1,2221,168
definitionDH907468|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P13, 5' end.DH907469|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgttagcatgttttagtttcaagcttctggaaatgggtagtag
agatgtctcacaacattgtgaaggtacctactgttgctaaattcaactat
taaaatagtaaattttatgtcatgtgtattttatcacaccaaaacctcct
tttcattctctctcctaagtaacaagccttaaaacatgtgttttgtggtt
caccaagctgtacctgttttaagattacttggttaaatagcaaagaagtt
tatgcaaggggttttaggtagccgaagaattatcaggaagattggagaat
taggcaaggggttttgttttgagaaataacattcccatctatgctacaga
gctgagttgtctccagtgccctcagggcttcgagatacagttacagagtt
gctacttaagccagggttccttcacagttcctgcaccaggaactggactt
ttcggacagcactactgccaaaacccctgcatctttaccagaaactagat
tctggatggcatgttggcattcttacattgtctactttcaaagtaggtca
atgtgagtccccttctagacatctctggtgagtatattaaggcgatgaag
aacaaactacatgcctgggtttagctacaaagaaatcttaagaaaaagtc
accataattctacattaggaagccagaactcctaagatgggattttctcc
atagcaaaggttttcagcaggaaccataagtctagggagtgacaagggac
ttattttcttcttttttttcctcctcttagtcacagtttcttttctccaa
agtttcacttatatcctttttaaaaagaaaaaacgatgttgtttcctttc
attgtgtgtgtgtatgacagtaggtgcctgcagatatcagaagtgtattg
tgtccctggacctggagtcacacagttgtaagtttccagttgtggatact
gtcaaaccaaacatgtgtcctctacagaagccatatgtgctttcaatcac
tgagccatctctccagccccgtaccccatttctttagacactaaagtaat
tggagtcttcccacaatttctgcatcagtggaggtgccaggtttcacttg
ctgaagagaatcagaacataaagttgcttctattggcaaacgaggcccag
cctccgaccagtcgaattcagtcaggtcaagaatgaaccaatgaagtata
atgtgagactcgtactgggcgc
gaattcctgggctgtcctggaccctgtgtgctggtcttagtgtgctgtgc
acacatctgcaaaaggcaaaaggcaggtctcagtggcgtggtctctgcct
ctcagcaagctagaatatagttaggggacagcgtaagattgaagacccca
ggtaggaccgagtgatgaacagtgagatggatggattgtagctggctctg
gccacatagccatggctactgcagaggaaccactagaagtatctctgacg
agtgctgagagagtgccagaaggatgtgagcacagctggacagtgagaac
ggcctggctcacagtcattcatgctgtcacagtcattcgtgctggcattc
cctggggccccagcctgctttgcccagagctttcccttggcagtcactca
gctctttggaagaaaggtacatacagagtcccagcatccaaacccgtaaa
gattcagaattggaaactttctgaatgccttcctgagttttaggtttaga
actgagtcctggacctcagcagttaagagcactggctgctcttgcagaag
tcctgagttcagttcccaacaatacaaggtggctcatgatcatctgcaat
gggatctgatgccctcttttgccaagtaggcatacatgcaaatagagact
aacatacataaaatacataaataaatgcatcttagaattgagtgccatct
taacacatgcgtatgtgtatgctcatgcgtgtacacacataccccctcac
ctatacatgcaactattccaacaacaacagcagcaacgaaagtcaccagg
cagagtggcatatatctagaagacagagagttcaaagccagctaggtcta
catagcaagttccacctagccatggcttgatagtgatatcctaactcaaa
aaaataataatgataatgataataatataattcctaaaccaagaacactc
ttagtaccaagttctcaggcattggcttttattggttacccatggcaaca
ctagacaacccagcctcagttattctactagcttctttgttagtgagcaa
cagaaccagaaggccttaccacgtatcacgcagcatgccacattgccagt
cattgcttcctggaggcttggaatgccgttggctctagctctcttgaagg
aagagacatgctttcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_36146889_36148061
seq2: B6Ng01-096P13.g_67_1234

seq1  GAATTCCTGGGCTGTCCTGGACCCTGTGTGCTGGTCTTAGTGTGCTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGCTGTCCTGGACCCTGTGTGCTGGTCTTAGTGTGCTGTGC  50

seq1  ACACATCTGCAAAAGGCAAAAGGCAGGTCTCAGTGGCGTGGTCTCTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTGCAAAAGGCAAAAGGCAGGTCTCAGTGGCGTGGTCTCTGCCT  100

seq1  CTCAGCAAGCTAGAATATAGTTAGGGGACAGCGTAAGATTGAAGACCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAAGCTAGAATATAGTTAGGGGACAGCGTAAGATTGAAGACCCCA  150

seq1  GGTAGGACCGAGTGATGAACAGTGAGATGGATGGATTGTAGCTGGCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGACCGAGTGATGAACAGTGAGATGGATGGATTGTAGCTGGCTCTG  200

seq1  GCCACATAGCCATGGCTACTGCAGAGGAACCACTAGAAGTATCTCTGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATAGCCATGGCTACTGCAGAGGAACCACTAGAAGTATCTCTGACG  250

seq1  AGTGCTGAGAGAGTGCCAGAAGGATGTGAGCACAGCTGGACAGTGAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGAGAGAGTGCCAGAAGGATGTGAGCACAGCTGGACAGTGAGAAC  300

seq1  GGCCTGGCTCACAGTCATTCATGCTGTCACAGTCATTCGTGCTGGCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCTCACAGTCATTCATGCTGTCACAGTCATTCGTGCTGGCATTC  350

seq1  CCTGGGGCCCCAGCCTGCTTTGCCCAGAGCTTTCCCTTGGCAGTCACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCCCCAGCCTGCTTTGCCCAGAGCTTTCCCTTGGCAGTCACTCA  400

seq1  GCTCTTTGGAAGAAAGGTACATACAGAGTCCCAGCATCCAAACCCGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTGGAAGAAAGGTACATACAGAGTCCCAGCATCCAAACCCGTAAA  450

seq1  GATTCAGAATTGGAAACTTTCTGAATGCCTTCCTGAGTTTTAGGTTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGAATTGGAAACTTTCTGAATGCCTTCCTGAGTTTTAGGTTTAGA  500

seq1  ACTGAGTCCTGGACCTCAGCAGTTAAGAGCACTGGCTGCTCTTGCAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTCCTGGACCTCAGCAGTTAAGAGCACTGGCTGCTCTTGCAGAAG  550

seq1  TCCTGAGTTCAGTTCCCAACAATACAAGGTGGCTCATGATCATCTGCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTCAGTTCCCAACAATACAAGGTGGCTCATGATCATCTGCAAT  600

seq1  GGGATCTGATGCCCTCTTTTGCCAAGTAGGCATACATGCAAATAGAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTGATGCCCTCTTTTGCCAAGTAGGCATACATGCAAATAGAGACT  650

seq1  AACATACATAAAATACATAAATAAATGCATCTTAGAATTGAGTGCCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACATAAAATACATAAATAAATGCATCTTAGAATTGAGTGCCATCT  700

seq1  TAACACATGCGTATGTGTATGCTCATGCGTGTACACACATACCCCCTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATGCGTATGTGTATGCTCATGCGTGTACACACATACCCCCTCAC  750

seq1  CTATACATGCAACTATTCCAACAACAACAGCAGCAACGAAAGTCACCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATGCAACTATTCCAACAACAACAGCAGCAACGAAAGTCACCAGG  800

seq1  CAGAGTGGCATATATCTAGAAGACAGAGAGTTCAAAGCCAGCTAGGTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGCATATATCTAGAAGACAGAGAGTTCAAAGCCAGCTAGGTCTA  850

seq1  CATAGCAAGTTCCACCTAGCCATGGCTTGATAGTGATATCCTAACTC-AA  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATAGCAAGTTCCACCTAGCCATGGCTTGATAGTGATATCCTAACTCAAA  900

seq1  AAAATAATAATGATAATGATAATAATATAAATTCCTAAACCAAGAACACT  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAAATAATAATGATAATGATAATAATAT-AATTCCTAAACCAAGAACACT  949

seq1  CTTAGTACCAAGTTCTCCAGGCATTGGCTTTTATTGGTTACCCATGGCAA  999
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTAGTACCAAGTTCT-CAGGCATTGGCTTTTATTGGTTACCCATGGCAA  998

seq1  CACTAGACAAAACCCAGCCTCAGTTA-TCCACAAGC-TCCTTGGTAGTGA  1047
      ||||||||  |||||||||||||||| || || ||| || ||| ||||||
seq2  CACTAGAC--AACCCAGCCTCAGTTATTCTACTAGCTTCTTTGTTAGTGA  1046

seq1  GCCAACAGAACCAGAAAGCCTTACCACGTATCACGCAGCATGCCACACTG  1097
      | |||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  G-CAACAGAACCAGAAGGCCTTACCACGTATCACGCAGCATGCCACATTG  1095

seq1  CCAGTCATTTGCTTCCCTGAAGGCTGGGATGGCGTTTGGTCTCCTAGCTC  1147
      ||||||| |||||| |||| ||||| |||  ||  |||| || |||||||
seq2  CCAGTCA-TTGCTT-CCTGGAGGCTTGGAATGCCGTTGG-CT-CTAGCTC  1141

seq1  TCTTGTAGGAGAGAG-CATGC-TTCTTC  1173
      ||||| |||| |||| ||||| ||||||
seq2  TCTTGAAGGA-AGAGACATGCTTTCTTC  1168