BAC Information

Click to search

BAC

Clone NameB6Ng01-097F09
ChromosomeX (Build37)15 (Build37)
Map Location 111,594,036 - 111,595,16013,331,937 - 13,332,486
singlet/doubletsingletsinglet
Overlap geneKlhl4
Upstream geneDach2, LOC237016, EG664945, EG634881, LOC100039201
Downstream geneGm1866, EG546361, EG237009, 4930524E20Rik, LOC237008, EG664969, EG546362, LOC100039255, LOC623913, LOC546363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097F09.bB6Ng01-097F09.g
ACCDH907739DH907740
length1,108979
definitionDH907739|Mus musculus domesticus DNA, BAC clone: B6Ng01-097F09, 5' end.DH907740|Mus musculus domesticus DNA, BAC clone: B6Ng01-097F09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,594,036 - 111,595,160)(13,331,937 - 13,332,486)
sequence
gaattctcaaaattataatattgtaagtatgataaatgggcagttggctt
attggacatctgtatttttaattacttttcattcattattactgtaagat
gtagttgtagttattactaaagtatggttactaaggaaccaatagaagca
ggaaagggaaccaatagaaataggcacagaaaagggtgagaggaaaattt
cttacatttgaaagcatacaatgaatgtaaataaagaaaatatctaacaa
caacaacaacaacaacaacaacaacaaacccatacaatgggtaagtaact
ataaccgataagagcaggctaataaaatgagcattactagagacttgaag
attcatttttggatgatgcataaagatgatcattggcatttatctcttcc
aatgtaaattataatgctatatgtattattatatctatttgttgatttgg
aaaacatctgttttatactgttttcacaacacacaaatatgtagtggatt
ttgtttaaaatgtcaacaattccttttgcagcattaaagttaaattaata
aaaataatttggtttagaattttctcacttccattttactttccttaggt
agtttaaaaaaaaaaacttgacatgctctttagtgaaattatctaaagta
aataaaataaccataaataaattatactcagtgactacaatatccattta
tcattgggggctaaagattttacagaatgattattgttttatatgcatga
atattttcttccaatcaaagtagtagacagcaatgcaaatgaattttgaa
ctgataggaaatatgtatttttgaaactatcaataaatattcactatgtc
actattgcccatgaaatactcagtaattaaaatgagattttctctatttg
ggaaactgtgatgttttaagttttatactcctgaaaaccgtacacattaa
atcataatcagattatttcatctgagaagcatattccatgtgtttgagaa
ctttagtatttcaccatgttgtctttagaaattttcttattgaaataaat
tatacctcattggagatgtaaattggatgatgatatattcattttaattg
tgtggaaa
gaattcttctttatgtctgtaccccatttttaatggggttatttgttttt
ctgaagtccatctttttgagttctttatatatatatattggatattagtc
ccctatctgatttaggatttgtaaagatttttttccaatcactaggtggc
ctttttgtcttattgacagtgtcttttgccttacagaaggtttgcaattt
tatgaggacccatttgtcgaatctcaatcttatagcaccagccattgctg
ttctgttcaggaattttccgcctgtgcccacatcttcgaggctttccccc
actttctcctctataagtttcagtgtctctggttttatttggagatcttt
gattcgcttagattttaccttagtaaaaggagataagaatggattaattc
taattcttctaaatgataactgtgagttgtgccagcaccatttgttgaaa
atgctgtcttttttccactggatggtttagatcccttgtcaaagattatg
tgactataggtgtgtgggttcatttctgggtattaaatttattccattgg
tctacctgtgtgtcactatacctgtaccatgaagattttgtcacaattgc
tctgcagtacagctttaagtcaggaatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgccctttctaattcgttgaaggattgagttggtatttt
gatggggattgcattgaatctgtagattgcttttgacaagatagccattt
ttactatatttgatcctgtcaatccatgagcatgggagatctttccgtct
tatgagatcttccttaatttctttcttcaaagacttgaagtcttaatcat
acgatctttcacttccttacttagagtcacaccaaggtatttatattatt
tgttactatgtggaagggtgttggtttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_111594036_111595160
seq2: B6Ng01-097F09.b_47_1154 (reverse)

seq1  TTTCCACAACAATTAAAATGATAATATTATCAATTCAATTCAATTTACCA  50
      ||||||| |||||||||||||  |||| |||      || ||||||| ||
seq2  TTTCCAC-ACAATTAAAATGAATATATCATC------ATCCAATTTA-CA  42

seq1  TCTCCAATGA-GTATAAATTTTATGTCAATAAGATAATATTCTAAAGACA  99
      |||||||||| ||||||  ||||| ||||||||| ||| |||||||||||
seq2  TCTCCAATGAGGTATAA--TTTATTTCAATAAGAAAAT-TTCTAAAGACA  89

seq1  ACCATGGTGAAATTAACTAAAGTTCTCAAAACAACATGGAATATGCTTCT  149
      | |||||||||||  |||||||||||||||   |||||||||||||||||
seq2  A-CATGGTGAAAT--ACTAAAGTTCTCAAA--CACATGGAATATGCTTCT  134

seq1  CCAGATGAAATTAATCCTGATTATGATTTAATGTGTACGGTTTTCAGGAG  199
       ||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  -CAGATGAAA-TAAT-CTGATTATGATTTAATGTGTACGGTTTTCAGGAG  181

seq1  TATAAAACTTAAAACATCACAGTTTCCCAAATAGAGAAAATCTCATTTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACTTAAAACATCACAGTTTCCCAAATAGAGAAAATCTCATTTTA  231

seq1  ATTACTGAGTATTTCATGGGCAATAGTGACATAGTGAATATTTATTGATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGAGTATTTCATGGGCAATAGTGACATAGTGAATATTTATTGATA  281

seq1  GTTTC-AAAATACATATTTCCTATCAGTTCAAAATTCATTTGCATTGCTG  348
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAAAATACATATTTCCTATCAGTTCAAAATTCATTTGCATTGCTG  331

seq1  TCTACTACTTTGATTGGAAGAAAATATTCATGCATATAAAACAATAATCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACTTTGATTGGAAGAAAATATTCATGCATATAAAACAATAATCA  381

seq1  TTCTGTAAAATCTTTAGCCCCCAATGATAAATGGATATTGTAGTCACTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAAATCTTTAGCCCCCAATGATAAATGGATATTGTAGTCACTGA  431

seq1  GTATAATTTATTTATGGTTATTTTATTTACTTTAGATAATTTCACTAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATTTATTTATGGTTATTTTATTTACTTTAGATAATTTCACTAAAG  481

seq1  AGCATGTCAAGTTTTTTTTTTTAAACTACCTAAGGAAAGTAAAATGGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTCAAGTTTTTTTTTTTAAACTACCTAAGGAAAGTAAAATGGAAG  531

seq1  TGAGAAAATTCTAAACCAAATTATTTTTATTAATTTAACTTTAATGCTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATTCTAAACCAAATTATTTTTATTAATTTAACTTTAATGCTGC  581

seq1  AAAAGGAATTGTTGACATTTTAAACAAAATCCACTACATATTTGTGTGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAATTGTTGACATTTTAAACAAAATCCACTACATATTTGTGTGTT  631

seq1  GTGAAAACAGTATAAAACAGATGTTTTCCAAATCAACAAATAGATATAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAACAGTATAAAACAGATGTTTTCCAAATCAACAAATAGATATAAT  681

seq1  AATACATATAGCATTATAATTTACATTGGAAGAGATAAATGCCAATGATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATATAGCATTATAATTTACATTGGAAGAGATAAATGCCAATGATC  731

seq1  ATCTTTATGCATCATCCAAAAATGAATCTTCAAGTCTCTAGTAATGCTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATGCATCATCCAAAAATGAATCTTCAAGTCTCTAGTAATGCTCA  781

seq1  TTTTATTAGCCTGCTCTTATCGGTTATAGTTACTTACCCATTGTATGGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAGCCTGCTCTTATCGGTTATAGTTACTTACCCATTGTATGGGT  831

seq1  TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGATATTTTCTTTATTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGATATTTTCTTTATTTA  881

seq1  CATTCATTGTATGCTTTCAAATGTAAGAAATTTTCCTCTCACCCTTTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTGTATGCTTTCAAATGTAAGAAATTTTCCTCTCACCCTTTTCT  931

seq1  GTGCCTATTTCTATTGGTTCCCTTTCCTGCTTCTATTGGTTCCTTAGTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTATTTCTATTGGTTCCCTTTCCTGCTTCTATTGGTTCCTTAGTAA  981

seq1  CCATACTTTAGTAATAACTACAACTACATCTTACAGTAATAATGAATGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTTTAGTAATAACTACAACTACATCTTACAGTAATAATGAATGAA  1031

seq1  AAGTAATTAAAAATACAGATGTCCAATAAGCCAACTGCCCATTTATCATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATTAAAAATACAGATGTCCAATAAGCCAACTGCCCATTTATCATA  1081

seq1  CTTACAATATTATAATTTTGAGAATTC  1125
      |||||||||||||||||||||||||||
seq2  CTTACAATATTATAATTTTGAGAATTC  1108

seq1: chr15_13331937_13332486
seq2: B6Ng01-097F09.g_492_1046 (reverse)

seq1  GGAAA-CAACACCCTTCTCAATAGTCACGAATAATATAAAATACCTTGGT  49
      ||||| |||||||||||   ||||| || |||||||| ||||||||||||
seq2  GGAAACCAACACCCTTCCACATAGTAACAAATAATAT-AAATACCTTGGT  49

seq1  GTGACT-AAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTC  98
      ||||||  || ||||||||||||||||| ||||||| |  ||||||||||
seq2  GTGACTCTAAGTAAGGAAGTGAAAGATC-GTATGATTAAGACTTCAAGTC  98

seq1  TCTGAAGAAAGAAATTA---AAGATCTCAGAAGTTGGAAAGATCTCCCAT  145
      | |||||||||||||||   ||||||||| |||  |||||||||||||||
seq2  TTTGAAGAAAGAAATTAAGGAAGATCTCATAAGACGGAAAGATCTCCCAT  148

seq1  GCTCATGGATTGGTAGGATC-AACATTG-AAAAATGGCTATCCTG-CAAA  192
      ||||||||||||  |||||| || || | ||||||||||||| || ||||
seq2  GCTCATGGATTGACAGGATCAAATATAGTAAAAATGGCTATCTTGTCAAA  198

seq1  AGCAATCTACAGATTCAATGCAATCCCCATCAAAATTTCAACTCAGTTCT  242
      ||||||||||||||||||||||||||||||||||||  ||||||| | ||
seq2  AGCAATCTACAGATTCAATGCAATCCCCATCAAAATACCAACTCAATCCT  248

seq1  TCAACGAATTAGAAAGGGCAATCTGCAAATTCATCTGGAATAACAAAAAA  292
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCAACGAATTAGAAAGGGCAATTTGCAAATTCATCTGGAATAACAAAAAA  298

seq1  CCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAAT  348

seq1  CACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTG  392
      |||||| |||||| ||||||| |||| |||||||||||||| |||| || 
seq2  CACCATTCCTGACTTAAAGCTGTACTGCAGAGCAATTGTGACAAAATCTT  398

seq1  CATGGTACTGGTATAGTGACAGACAAGTAGACCAACGGAACAGAATTGAA  442
      |||||||| |||||||||||| ||| ||||||||| |||| | |||| ||
seq2  CATGGTACAGGTATAGTGACACACAGGTAGACCAATGGAATA-AATTTAA  447

seq1  GACCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTTGACAAGAG  492
       ||||||| |||||||||||||||||| ||||| | |||||||||||| |
seq2  TACCCAGAAATGAACCCACACACCTATAGTCACATAATCTTTGACAAGGG  497

seq1  AGCAAAAACCCTCCAGTGG-AAAAAGACAGCATTTTCAACAAATGGTGCT  541
      | |  ||||| |||||||| ||||||||||||||||||||||||||||||
seq2  ATC-TAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCT  546

seq1  GGCACAACT  550
      |||||||||
seq2  GGCACAACT  555