BAC Information

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BAC

Clone NameB6Ng01-097I18
Chromosome15 (Build37)Y (Build37)
Map Location 44,870,459 - 44,871,1351,120,579 - 1,121,024
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTrhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950
Downstream geneKcnv1, LOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097I18.bB6Ng01-097I18.g
ACCDH907895DH907896
length678896
definitionDH907895|Mus musculus domesticus DNA, BAC clone: B6Ng01-097I18, 5' end.DH907896|Mus musculus domesticus DNA, BAC clone: B6Ng01-097I18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,870,459 - 44,871,135)(1,120,579 - 1,121,024)
sequence
gaattcttcatcaactgacacaaggtaactctgaaaaataatctatgtaa
actttcaaagtccaaactgaactatttgatgtattggtccttgtagtaat
ttttaaagactttttttttttttcagaataaaaccaaagcaactttattc
accatgggaatgaatcgtgtctagctggttagggacacagtcagactcgg
gagcagactgtggccctgacggaagggagccgcctccttttaaagcataa
ccacaataagcacagtcgggggatataaagaaggaatttttaaattgagg
gttaatccttgaacctgtcacaggttgtggggtctgtgatagcaagatgt
cgctataggatcaagagtgttttaagaggcaggggttttatctcaactct
tacggggctgatgcagaccaagtagcctgtcgatttttctcttaaactga
ggagaatgtagagcaaagggcatgcagtaaaatgagggcagtggacttga
agttactctagacccttcagttctcaatacccaggaggcagaggcaagca
gacaactgtgagttcaaggctaaactgttctacataacaggatccacacc
aatcaggaccgtgggggcttggagagagacaggacatgctcaacctcttc
cttccttccttccttccttccttacctt
gaattctcctttctgacttgaattttctgggctgaaatttgtttaggatg
taacttttgttctttttaaaatattttttattaggtattttcctcattta
catttccaatgctatcccaaaattcccccataccctcccccccccactcc
cctacccacccactcccactttttggccctggcattcccctgtactgggg
catataaagtttgcaagtccaatgggcctctctttgcagtgatggccgac
taggccatcttttgatacatatgcagctaaagacaagagctcccgggtac
tggttagttcatattgttgttccacctatagggttgcagttccctttagc
tccttgggtactttctctagctcctccataaggggccatgtgacccatcc
aatagctgactgtgatcatccacttctgtgtttgctaggccccggcatag
tctcacaagagacagctctatctgggtcctttcagcaaaattttgctagt
gtatgcaatggtataacttatgttctaaatattaaatatatctaaataac
gatattgcctgtgaatcttttctggaacaacaactactccccaaaaattt
aaagctcattgattcagagcaatggcttgtagtaaaatgccttcagaggt
atcagctaataaaaataccctccatatatggataatatacactgaaggat
ttcaaatttctttgtattgaagcagcaacacatttttttatataatgaag
ggctattagccattctctgtggccaaagtttccaatgatatcgcttcatg
gactccttaaaattacaagctgactaaaagcaaaccctgtattattatca
agatgttaaggaataaaaaacatactcaaacccataataaatctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_44870459_44871135
seq2: B6Ng01-097I18.b_43_720 (reverse)

seq1  AAGG-AAGGAAGGAAGGAAGGAAGGAAGGAAGAGGTTGAGCATGTCCTGT  49
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAGGAAGGAAGGAAGGAAGGAAGGAAGAGGTTGAGCATGTCCTGT  50

seq1  CTCTCTCCAAGCCCCCACGGTCCTGATTGGTGTGGATCCTGTTATGTAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCAAGCCCCCACGGTCCTGATTGGTGTGGATCCTGTTATGTAGA  100

seq1  ACAGTTTAGCCTTGAACTCACAGTTGTCTGCTTGCCTCTGCCTCCTGGGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTAGCCTTGAACTCACAGTTGTCTGCTTGCCTCTGCCTCCTGGGT  150

seq1  ATTGAGAACTGAAGGGTCTAGAGTAACTTCAAGTCCACTGCCCTCATTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAACTGAAGGGTCTAGAGTAACTTCAAGTCCACTGCCCTCATTTT  200

seq1  ACTGCATGCCCTTTGCTCTACATTCTCCTCAGTTTAAGAGAAAAATCGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATGCCCTTTGCTCTACATTCTCCTCAGTTTAAGAGAAAAATCGAC  250

seq1  AGGCTACTTGGTCTGCATCAGCCCCGTAAGAGTTGAGATAAAACCCCTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACTTGGTCTGCATCAGCCCCGTAAGAGTTGAGATAAAACCCCTGC  300

seq1  CTCTTAAAACACTCTTGATCCTATAGCGACATCTTGCTATCACAGACCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAAACACTCTTGATCCTATAGCGACATCTTGCTATCACAGACCCC  350

seq1  ACAACCTGTGACAGGTTCAAGGATTAACCCTCAATTTAAAAATTCCTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTGTGACAGGTTCAAGGATTAACCCTCAATTTAAAAATTCCTTCT  400

seq1  TTATATCCCCCGACTGTGCTTATTGTGGTTATGCTTTAAAAGGAGGCGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCCCCCGACTGTGCTTATTGTGGTTATGCTTTAAAAGGAGGCGGC  450

seq1  TCCCTTCCGTCAGGGCCACAGTCTGCTCCCGAGTCTGACTGTGTCCCTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCGTCAGGGCCACAGTCTGCTCCCGAGTCTGACTGTGTCCCTAA  500

seq1  CCAGCTAGACACGATTCATTCCCATGGTGAATAAAGTTGCTTTGGTTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAGACACGATTCATTCCCATGGTGAATAAAGTTGCTTTGGTTTTA  550

seq1  TTCTGAAAAAAAAAAAAAGTCTTTAAAAATTACTACAAGGACCAATACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAAAAAAAAAAAGTCTTTAAAAATTACTACAAGGACCAATACAT  600

seq1  CAAATAGTTCAGTTTGGACTTTGAAAGTTTACATAGATTATTTTTCAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTTCAGTTTGGACTTTGAAAGTTTACATAGATTATTTTTCAGAG  650

seq1  TTACCTTGTGTCAGTTGATGAAGAATTC  677
      ||||||||||||||||||||||||||||
seq2  TTACCTTGTGTCAGTTGATGAAGAATTC  678

seq1: chrY_1120579_1121024
seq2: B6Ng01-097I18.g_134_571

seq1  TTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATT  50
      |||||||  |        ||||||||||||||||||  ||||||||||||
seq2  TTTTTAAAAT--------ATTTTTTATTAGGTATTTTCCTCATTTACATT  42

seq1  TCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTG  100
      ||||||||||| |||||| ||||||||| || ||| ||||||||||||| 
seq2  TCCAATGCTATCCCAAAATTCCCCCATACCCTCCCCCCCCCACTCCCCTA  92

seq1  CCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATA  150
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  CCCACCCACTCCCACTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATA  142

seq1  TAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGG  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCGACTAGG  192

seq1  CCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGT  250
      ||||||||||||| ||||||||||| || |||||||||| ||||||||||
seq2  CCATCTTTTGATACATATGCAGCTAAAGACAAGAGCTCCCGGGTACTGGT  242

seq1  TAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCT  300
      ||| |||||  ||||||||||||||||||||| || ||||||||||||||
seq2  TAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCT  292

seq1  TGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTA  350
      ||| |||||||||||||||||||||  || ||| | ||| ||||||| ||
seq2  TGGGTACTTTCTCTAGCTCCTCCATAAGGGGCCATGTGACCCATCCAATA  342

seq1  GCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTC  400
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  GCTGACTGTGATCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTC  392

seq1  ACAAGAGACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGT  446
      |||||||||||||  |||||  ||||||||  ||||| ||||||||
seq2  ACAAGAGACAGCTCTATCTGGGTCCTTTCAGCAAAATTTTGCTAGT  438