BAC Information

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BAC

Clone NameB6Ng01-097M17
Chromosome15 (Build37)
Map Location 7,086,959 - 7,205,066
singlet/doubletdoublet
Overlap geneLifr, Egflam
Upstream geneDab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr
Downstream geneGdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097M17.bB6Ng01-097M17.g
ACCDH908068DH908069
length1,138557
definitionDH908068|Mus musculus domesticus DNA, BAC clone: B6Ng01-097M17, 5' end.DH908069|Mus musculus domesticus DNA, BAC clone: B6Ng01-097M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,086,959 - 7,088,078)(7,204,504 - 7,205,066)
sequence
gaattctgtgtgcaacatcaatagctctgttgcttttagcagccaccccc
ccagcccccccagaattcccaatatctaaaaagcatgtggtacagtgtag
gggccggggaggaagttgcatttccgttcccagtggttgtgtgaacttga
gtaagttccgcgtctgtttcggtccctgttgtgtgggtgcttagcggcag
agaaggctggctaaacataccctgcctgagctgctgggatgacggacact
gggcgccctgaacagtagaggagttctagattgctagatcaatttcgtgg
gtcttgaaaatttcagggcatcctgacacagcattgctcctggccattgg
gaagtgatttgaggttttaaaagaaaaaccatccatgtatttgtgcgtga
gtatgtacaagccgaggtcggaggccaactcccaggagaggcctttctcc
ttccaccattacggttctagggattgaactcaggtcggtgggcttgctga
caccggctttcgcccacttagatgcaaatactctttgttgctagtgcttg
tttttttttgtttgtttgttttttgttttttttgtttcttttttttttgt
ttgtttgttttaaagacatttttgcttccttctgttgttgtcttgagtag
tccagccgtacattcctcaaggttaggtctgtctgactcagtcagtgatg
ggtgtgtctgtgttaccagtactgcataggccacggtgccccaggtacag
gtgaccttgcccgtgcaacaacacacaggaacaaccacggcactgcgaag
ccaggaggtcactgaggttaaggtagcaagctgcagatccctggcctcct
gtcctgttctttcagaagaaaagcacgttgatgttactttccagtgaaca
caaacactgcccttccacttgtttcgacccgctgggtgagcagcagcttc
ggtgacggtcactgtgttgacatttaccagatgacttttattgaagttgg
gtgtacactttcttaggttttctgggcttgaaaactgcttatgcacttct
ggtgaaaggcacacttctctgctacctgcgagtgtagactctcggccgtt
tggaaattttatcctttttctataaattgccctggccc
ttatcagtatcattgaatgcacggcctacattcgttgagaaacaacattg
gtggaagcttcatgggtgtgagatggaggagacaattcagaagagtgcgg
tggcttccatctcaggcctcgtggagtcacacagggcctggttttatctg
tgtttatttccttctcggtgagcatcaagtgctgcataattaggatcatt
gtccaagactggaagcttggaatgtgctgaggggctgcggtgcagtgcca
ggagctccggactgataactgccgttttctggaaccttccatgggctctc
caagcctcagtttattccttagtaaagtagatcttgatgtctggatagaa
ggaggtgggggaagatggtcaggaaggagagaggaggtaatgccatgcat
gtacgacaatgccatatttcataaaacaacttgaaatctggtttattaaa
gaagaatggaagttaggacaaagaaggcatgaggtgacaagatatgtgtc
cctattctttgtgatggtcccggtgaggctggaagtggtcattatggacc
tgggtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_7086959_7088078
seq2: B6Ng01-097M17.b_47_1184

seq1  GAATTCTGTGTGCAACATCAATAGCTCTGTTGCTTTTAGCAGCCACCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTGCAACATCAATAGCTCTGTTGCTTTTAGCAGCCACCCCC  50

seq1  CCAGCCCCCCCAGAATTCCCAATATCTAAAAAGCATGTGGTACAGTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCCCCAGAATTCCCAATATCTAAAAAGCATGTGGTACAGTGTAG  100

seq1  GGGCCGGGGAGGAAGTTGCATTTCCGTTCCCAGTGGTTGTGTGAACTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGGGGAGGAAGTTGCATTTCCGTTCCCAGTGGTTGTGTGAACTTGA  150

seq1  GTAAGTTCCGCGTCTGTTTCGGTCCCTGTTGTGTGGGTGCTTAGCGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTCCGCGTCTGTTTCGGTCCCTGTTGTGTGGGTGCTTAGCGGCAG  200

seq1  AGAAGGCTGGCTAAACATACCCTGCCTGAGCTGCTGGGATGACGGACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTGGCTAAACATACCCTGCCTGAGCTGCTGGGATGACGGACACT  250

seq1  GGGCGCCCTGAACAGTAGAGGAGTTCTAGATTGCTAGATCAATTTCGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGCCCTGAACAGTAGAGGAGTTCTAGATTGCTAGATCAATTTCGTGG  300

seq1  GTCTTGAAAATTTCAGGGCATCCTGACACAGCATTGCTCCTGGCCATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAAAATTTCAGGGCATCCTGACACAGCATTGCTCCTGGCCATTGG  350

seq1  GAAGTGATTTGAGGTTTTAAAAGAAAAACCATCCATGTATTTGTGCGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGATTTGAGGTTTTAAAAGAAAAACCATCCATGTATTTGTGCGTGA  400

seq1  GTATGTACAAGCCGAGGTCGGAGGCCAACTCCCAGGAGAGGCCTTTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACAAGCCGAGGTCGGAGGCCAACTCCCAGGAGAGGCCTTTCTCC  450

seq1  TTCCACCATTACGGTTCTAGGGATTGAACTCAGGTCGGTGGGCTTGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCATTACGGTTCTAGGGATTGAACTCAGGTCGGTGGGCTTGCTGA  500

seq1  CACCGGCTTTCGCCCACTTAGATGCAAATACTCTTTGTTGCTAGTGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGCTTTCGCCCACTTAGATGCAAATACTCTTTGTTGCTAGTGCTTG  550

seq1  TTTTTTTTTGTTTGTTTGTTTTTTGTTTTTTTTGTTTCTTTTTTTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGTTTGTTTGTTTTTTGTTTTTTTTGTTTCTTTTTTTTTTGT  600

seq1  TTGTTTGTTTTAAAGACATTTTTGCTTCCTTCTGTTGTTGTCTTGAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTAAAGACATTTTTGCTTCCTTCTGTTGTTGTCTTGAGTAG  650

seq1  TCCAGCCGTACATTCCTCAAGGTTAGGTCTGTCTGACTCAGTCAGTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCGTACATTCCTCAAGGTTAGGTCTGTCTGACTCAGTCAGTGATG  700

seq1  GGTGTGTCTGTGTTACCAGTACTGCATAGGCCACGGTGCCCCAGGTACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTCTGTGTTACCAGTACTGCATAGGCCACGGTGCCCCAGGTACAG  750

seq1  GTGACCTTGCCCGTGCAACAACACACAGGAACAACCACGGCACTGCGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTTGCCCGTGCAACAACACACAGGAACAACCACGGCACTGCGAAG  800

seq1  CCAGGAGGTCACTGAGG-TAAGGTAGCAAGCTGCAGAT-CCTGGCCTCCT  848
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  CCAGGAGGTCACTGAGGTTAAGGTAGCAAGCTGCAGATCCCTGGCCTCCT  850

seq1  GTCCTGTCCTTTCAGAAG-AAAGCACG-TGATGTTACTTTCCAGTGAACA  896
      ||||||| |||||||||| |||||||| ||||||||||||||||||||||
seq2  GTCCTGTTCTTTCAGAAGAAAAGCACGTTGATGTTACTTTCCAGTGAACA  900

seq1  CAAACACTG-CCGTCCACTTG-TTCGACCCGCTGGGTGAGCAGCAGC-TC  943
      ||||||||| || |||||||| ||||||||||||||||||||||||| ||
seq2  CAAACACTGCCCTTCCACTTGTTTCGACCCGCTGGGTGAGCAGCAGCTTC  950

seq1  GGTGAC-GTCACCGTGTTGACATTTA-CAGATGACTTTTATTGAAGTTGG  991
      |||||| ||||| ||||||||||||| |||||||||||||||||||||||
seq2  GGTGACGGTCACTGTGTTGACATTTACCAGATGACTTTTATTGAAGTTGG  1000

seq1  GTG-ACACTTTTCTTAGG-CTTCTGGGC-TGGAAACTGCTATTGCACCTT  1038
      ||| |||| |||||||||  |||||||| || ||||||||  |||| |||
seq2  GTGTACAC-TTTCTTAGGTTTTCTGGGCTTGAAAACTGCTTATGCA-CTT  1048

seq1  CT-GTGAAGGGCACACT--CCTGCCA-CTGCGAG-GGAGAC-CTCATGCC  1082
      || ||||| ||||||||   |||| | ||||||| | |||| |||  |||
seq2  CTGGTGAAAGGCACACTTCTCTGCTACCTGCGAGTGTAGACTCTC-GGCC  1097

seq1  GTTTTGAAATTTTATC--TTTTCGTAAAATTG-CCAGGCCC  1120
      |||| |||||||||||  |||||   |||||| || |||||
seq2  GTTTGGAAATTTTATCCTTTTTCTATAAATTGCCCTGGCCC  1138

seq1: chr15_7204504_7205066
seq2: B6Ng01-097M17.g_68_630 (reverse)

seq1  ATACCCAGGTCCATAATGACCACTTCCAGCCTCCCCGGGACCTTCACAAA  50
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  ATACCCAGGTCCATAATGACCACTTCCAGCCTCACCGGGACCATCACAAA  50

seq1  GAAAAGGGACACATCTCTTGTCACCTCATGCCTTCTTTGTCCTAACTTCC  100
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATAGGGACACATATCTTGTCACCTCATGCCTTCTTTGTCCTAACTTCC  100

seq1  ATTCTTCTTTAATTAACCAGATTTCAAGTTGTTTTATGAAATATGGCATT  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTTTAATAAACCAGATTTCAAGTTGTTTTATGAAATATGGCATT  150

seq1  GTCGTACATGCATGGCATTACCTCCTCTCTCCTTCCTGACCATCTTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTACATGCATGGCATTACCTCCTCTCTCCTTCCTGACCATCTTCCCC  200

seq1  CACCTCCTTCTATCCAGACATCAAGATCTACTTTACTAAGGAATAAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTTCTATCCAGACATCAAGATCTACTTTACTAAGGAATAAACTG  250

seq1  AGGCTTGGAGAGCCCATGGAAGGTTCCAGAAAACGGCAGTTATCAGTCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGAGAGCCCATGGAAGGTTCCAGAAAACGGCAGTTATCAGTCCG  300

seq1  GAGCTCCTGGCACTGCACCGCAGCCCCTCAGCACATTCCAAGCTTCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCTGGCACTGCACCGCAGCCCCTCAGCACATTCCAAGCTTCCAGT  350

seq1  CTTGGACAATGATCCTAATTATGCAGCACTTGATGCTCACCGAGAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACAATGATCCTAATTATGCAGCACTTGATGCTCACCGAGAAGGAA  400

seq1  ATAAACACAGATAAAACCAGGCCCTGTGTGACTCCACGAGGCCTGAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACAGATAAAACCAGGCCCTGTGTGACTCCACGAGGCCTGAGATG  450

seq1  GAAGCCACCGCACTCTTCTGAATTGTCTCCTCCATCTCACACCCATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACCGCACTCTTCTGAATTGTCTCCTCCATCTCACACCCATGAAG  500

seq1  CTTCCACCAATGTTGTTTCTCAACGAATGTAGGCCGTGCATTCAATGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCAATGTTGTTTCTCAACGAATGTAGGCCGTGCATTCAATGATA  550

seq1  CTGATAAGAATTC  563
      |||||||||||||
seq2  CTGATAAGAATTC  563