BAC Information

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BAC

Clone NameB6Ng01-097P19
Chromosome15 (Build37)
Map Location 10,113,764 - 10,170,556
singlet/doubletdoublet
Overlap genePrlr
Upstream geneLmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
Downstream geneAgxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097P19.bB6Ng01-097P19.g
ACCDH908209DH908210
length1,1161,130
definitionDH908209|Mus musculus domesticus DNA, BAC clone: B6Ng01-097P19, 5' end.DH908210|Mus musculus domesticus DNA, BAC clone: B6Ng01-097P19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,169,451 - 10,170,556)(10,113,764 - 10,114,896)
sequence
gaattcactattcattactggttgtttgcatggtttctgacttctggtga
ccagagttcagccccttttgtattgccttccttccatcactttcggatga
gcacaaagaggccgccctttggaggactgtgcattttcaggtttgtgctg
ataaagatatcaaccaggccaagctttctgatgaccatccaattggccct
gacatttcagaatgagtgtacttcactctgagatggccattttcagtggg
agatggaagcttttttggagaaaattgaccttttctcagcttgaagctac
tcttaaaccctgagggtctggatcgaaagaggaagaatattatggagtca
agatgaggatagagacagtgacagtaaccactaacctcaggatgacgtca
ctgaggagaaaccaggaggaaacaaaccctggtataaaaaaatctcaggg
aagttataactactcacgaagaaatgtgagcagcaggactctactccttt
tgattttatttgtattttggggcccaggacatggatttttcagtggactt
tttctgtactggttaattaattaattaattaattaattaaaataaacaga
aggtggatggggctggggaggggtaaccaagaagggggatatcatttgag
aggtaaatgaatggaataattaataaaagttaataataaaaattgaaaaa
aataaaataaaccacatttgctaaaaaattaggaaggacatcataacctg
actgatactccattgaaatgtgcagagtacaacagccaacacttctgggc
acctgggatacgcactcaggcagaatataagctgatgccttggtttaatt
ttctgttgtagcaagaaagcatccaagaagcagcagcttatgggaggaaa
gagtttatttgtcttacatttccaggttaccggtctgtcactgaggagaa
actgaagcagactctcaaggcagctcatcacataatgtctaacagtcaca
agcaggcatgaacaaataggccatgcggcctgcttgcttgaggtcttctc
gttttctcttgcctttggacagctcactgttccctgattgaagtgaattg
gtgctacttcacagtg
gaattctccatattgtattaggttcccaaagtgagtatgcctagcctcct
gttagtgacagaagtctttgtttctaacagtgtcatttttttgcatgaat
gaatttgtgttagcaacacatcagtaggtaaagattacaaacctccttaa
gctagcagcactgggatactatggttatcagctgccagaaggcagcctga
caatatcccatgaggctccagtcattactcaagtgatacttggtcatgcc
tacttatactcttgctgttggaattgaggactctggctgtattcttacgt
gactccagtgcctcacaaacttgatgatctctcttgttgtttcttgaaag
gatattaaccccttcatatacaaggaagagaaagaaatggaagaaagaga
aatgggagagggagagaaataaagagcccatattcctataactgtacttt
tcgtttttattttatttattcttacatttttagattggtttatttcactt
tgtgtttatgagtgctgaatgtgtatacatgcaccacatgcctgcctggt
ttgaagaaggtttaggattccctggaattttaagttgccacatggatact
aggaactgaatctatgtcctctgcaagagcagcaaatgaccttatccact
gagccatctcctcaaccccgattttatttttaaattttttattcagtaca
ttatatatgattatggcattttcaaataaactatgaatagtttcctcccc
ccacatacctcccaactcctcccccaccttctaccctttggaacattccc
cccaatctgtgatctagattcacttcctgtgtgtcctattgctctcctcc
aactcatcctcagtacctctttgtgtcctctcttggtcttcttccttgtc
tcttaggctttatgctatttatacctatatataagcctaagatggacaga
caggcagattgatacattacaagtaggatcaacgtgcgaatgagaattgt
tgtggattattttttcccctattgaatttgggttcatcttgtttcataat
actccttccagatcaccttatttctcacaaattcatgattccgtttttcc
ttcagctgataaataccaattttttatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_10169451_10170556
seq2: B6Ng01-097P19.b_49_1164 (reverse)

seq1  CACTGTG-AGTAGCACC-ATTCACT--CATCAGGGGACAGTGAGCTGTCC  46
      ||||||| ||||||||| |||||||   ||||||| ||||||||||||||
seq2  CACTGTGAAGTAGCACCAATTCACTTCAATCAGGGAACAGTGAGCTGTCC  50

seq1  -AAGGCAAGAGAAAACGAGAAGACCTCAAGCAAGCAGGCCGCATGG-CTA  94
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAGGCAAGAGAAAACGAGAAGACCTCAAGCAAGCAGGCCGCATGGCCTA  100

seq1  TTTGTTCATGCCTGCTTGTGACTG-TAGACATTATGTGATGAGCTGCCTT  143
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTGTTCATGCCTGCTTGTGACTGTTAGACATTATGTGATGAGCTGCCTT  150

seq1  GAGAGTCTGCTTCAGTTTCTCCTCAGTGACAGA-CGGTAACCTGGAATTG  192
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  GAGAGTCTGCTTCAGTTTCTCCTCAGTGACAGACCGGTAACCTGGAAATG  200

seq1  TAAGAC-AATAAACTCTTTCCTCCCATAAGCTGCTGCTTCTTGGATGCTT  241
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAATAAACTCTTTCCTCCCATAAGCTGCTGCTTCTTGGATGCTT  250

seq1  TCTTGCTACAACAG-AAATTAAACCAAGGCATCAGCTTATATTCTGCCTG  290
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTTGCTACAACAGAAAATTAAACCAAGGCATCAGCTTATATTCTGCCTG  300

seq1  AGTGCGTATCCCAGGTGCCCAGAAGTGTTGGCTGTTGTACTCTGCACATT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGTATCCCAGGTGCCCAGAAGTGTTGGCTGTTGTACTCTGCACATT  350

seq1  TCAATGGAGTATCAGTCAGGTTATGATGTCCTTCCTAATTTTTTAGCAAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGAGTATCAGTCAGGTTATGATGTCCTTCCTAATTTTTTAGCAAA  400

seq1  TGTGGTTTATTTTATTTTTTTCAATTTTTATTATTAACTTTTATTAATTA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTATTTTATTTTTTTCAATTTTTATTATTAACTTTTATTAATTA  450

seq1  TTCCATTCATTTACCTCTCAAATGATATCCCCCTTCTTGGTTACCCCTCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCATTTACCTCTCAAATGATATCCCCCTTCTTGGTTACCCCTCC  500

seq1  CCAGCCCCATCCACCTTCTGTTTATTTTAATTAATTAATTAATTAATTAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCATCCACCTTCTGTTTATTTTAATTAATTAATTAATTAATTAA  550

seq1  TTAACCAGTACAGAAAAAGTCCACTGAAAAATCCATGTCCTGGGCCCCAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAGTACAGAAAAAGTCCACTGAAAAATCCATGTCCTGGGCCCCAA  600

seq1  AATACAAATAAAATCAAAAGGAGTAGAGTCCTGCTGCTCACATTTCTTCG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAATAAAATCAAAAGGAGTAGAGTCCTGCTGCTCACATTTCTTCG  650

seq1  TGAGTAGTTATAACTTCCCTGAGATTTTTTTATACCAGGGTTTGTTTCCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGTTATAACTTCCCTGAGATTTTTTTATACCAGGGTTTGTTTCCT  700

seq1  CCTGGTTTCTCCTCAGTGACGTCATCCTGAGGTTAGTGGTTACTGTCACT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTCTCCTCAGTGACGTCATCCTGAGGTTAGTGGTTACTGTCACT  750

seq1  GTCTCTATCCTCATCTTGACTCCATAATATTCTTCCTCTTTCGATCCAGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTATCCTCATCTTGACTCCATAATATTCTTCCTCTTTCGATCCAGA  800

seq1  CCCTCAGGGTTTAAGAGTAGCTTCAAGCTGAGAAAAGGTCAATTTTCTCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGGGTTTAAGAGTAGCTTCAAGCTGAGAAAAGGTCAATTTTCTCC  850

seq1  AAAAAAGCTTCCATCTCCCACTGAAAATGGCCATCTCAGAGTGAAGTACA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCTTCCATCTCCCACTGAAAATGGCCATCTCAGAGTGAAGTACA  900

seq1  CTCATTCTGAAATGTCAGGGCCAATTGGATGGTCATCAGAAAGCTTGGCC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTGAAATGTCAGGGCCAATTGGATGGTCATCAGAAAGCTTGGCC  950

seq1  TGGTTGATATCTTTATCAGCACAAACCTGAAAATGCACAGTCCTCCAAAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGATATCTTTATCAGCACAAACCTGAAAATGCACAGTCCTCCAAAG  1000

seq1  GGCGGCCTCTTTGTGCTCATCCGAAAGTGATGGAAGGAAGGCAATACAAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCCTCTTTGTGCTCATCCGAAAGTGATGGAAGGAAGGCAATACAAA  1050

seq1  AGGGGCTGAACTCTGGTCACCAGAAGTCAGAAACCATGCAAACAACCAGT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGAACTCTGGTCACCAGAAGTCAGAAACCATGCAAACAACCAGT  1100

seq1  AATGAATAGTGAATTC  1106
      ||||||||||||||||
seq2  AATGAATAGTGAATTC  1116

seq1: chr15_10113764_10114896
seq2: B6Ng01-097P19.g_69_1198

seq1  GAATTCTCCATATTGTATTAGGTTCCCAAAGTGAGTATGCCTAGCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATATTGTATTAGGTTCCCAAAGTGAGTATGCCTAGCCTCCT  50

seq1  GTTAGTGACAGAAGTCTTTGTTTCTAACAGTGTCATTTTTTTGCATGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGACAGAAGTCTTTGTTTCTAACAGTGTCATTTTTTTGCATGAAT  100

seq1  GAATTTGTGTTAGCAACACATCAGTAGGTAAAGATTACAAACCTCCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTGTTAGCAACACATCAGTAGGTAAAGATTACAAACCTCCTTAA  150

seq1  GCTAGCAGCACTGGGATACTATGGTTATCAGCTGCCAGAAGGCAGCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAGCACTGGGATACTATGGTTATCAGCTGCCAGAAGGCAGCCTGA  200

seq1  CAATATCCCATGAGGCTCCAGTCATTACTCAAGTGATACTTGGTCATGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCCCATGAGGCTCCAGTCATTACTCAAGTGATACTTGGTCATGCC  250

seq1  TACTTATACTCTTGCTGTTGGAATTGAGGACTCTGGCTGTATTCTTACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATACTCTTGCTGTTGGAATTGAGGACTCTGGCTGTATTCTTACGT  300

seq1  GACTCCAGTGCCTCACAAACTTGATGATCTCTCTTGTTGTTTCTTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGTGCCTCACAAACTTGATGATCTCTCTTGTTGTTTCTTGAAAG  350

seq1  GATATTAACCCCTTCATATACAAGGAAGAGAAAGAAATGGAAGAAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAACCCCTTCATATACAAGGAAGAGAAAGAAATGGAAGAAAGAGA  400

seq1  AATGGGAGAGGGAGAGAAATAAAGAGCCCATATTCCTATAACTGTACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGAGGGAGAGAAATAAAGAGCCCATATTCCTATAACTGTACTTT  450

seq1  TCGTTTTTATTTTATTTATTCTTACATTTTTAGATTGGTTTATTTCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTTTATTTTATTTATTCTTACATTTTTAGATTGGTTTATTTCACTT  500

seq1  TGTGTTTATGAGTGCTGAATGTGTATACATGCACCACATGCCTGCCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTATGAGTGCTGAATGTGTATACATGCACCACATGCCTGCCTGGT  550

seq1  TTGAAGAAGGTTTAGGATTCCCTGGAATTTTAAGTTGCCACATGGATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAGGTTTAGGATTCCCTGGAATTTTAAGTTGCCACATGGATACT  600

seq1  AGGAACTGAATCTATGTCCTCTGCAAGAGCAGCAAATGACCTTATCCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGAATCTATGTCCTCTGCAAGAGCAGCAAATGACCTTATCCACT  650

seq1  GAGCCATCTCCTCAACCCCGATTTTATTTTTAAATTTTTTATTCAGTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCCTCAACCCCGATTTTATTTTTAAATTTTTTATTCAGTACA  700

seq1  TTATATATGATTATGGCATTTTCAAATAAACTATGAATAGTTTCCTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATGATTATGGCATTTTCAAATAAACTATGAATAGTTTCCTCCCC  750

seq1  CCACATACCTCCCAACTCCTCCCCCACCTTCTACCCTTTGGAACATTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACCTCCCAACTCCTCCCCCACCTTCTACCCTTTGGAACATTCCC  800

seq1  CCCAATCTGTGATCTAGATTCACTTCCTGTGTGTCCTATTGCTCTCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCTGTGATCTAGATTCACTTCCTGTGTGTCCTATTGCTCTCCTCC  850

seq1  AACTCATCCTCAGTACCTCTTTGTGTCCTCTCTTGGTCTTCTTCCTTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATCCTCAGTACCTCTTTGTGTCCTCTCTTGGTCTTCTTCCTTGTC  900

seq1  TCTTAGGCTTTATGCTATTTATACCTATATATAAAGCCTAAGATGGACAG  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTTAGGCTTTATGCTATTTATACCTATATAT-AAGCCTAAGATGGACAG  949

seq1  ACAGGCAGATGAATACATTACAAAGTAGGATCAACGTGCGAATGAGAAT-  999
      ||||||||||  ||||||||| ||||||||||||||||||||||||||| 
seq2  ACAGGCAGATTGATACATTAC-AAGTAGGATCAACGTGCGAATGAGAATT  998

seq1  -GTGTGGATTATTTTTTCCCCTATTGAATTT-GGTTCATCTTGTTTCAT-  1046
        ||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  GTTGTGGATTATTTTTTCCCCTATTGAATTTGGGTTCATCTTGTTTCATA  1048

seq1  ATACTCTTTTCCAGATCCAACCTATTTCTCACAAATTTCATGATTTCCGT  1096
      ||||||  |||||||| || | ||||||||||||| ||||||| ||||||
seq2  ATACTC-CTTCCAGAT-CACCTTATTTCTCACAAA-TTCATGA-TTCCGT  1094

seq1  TTTCTTTTCAGCTGAATAAAATACCAA-TGTTTATGTG  1133
      |||   |||||||||   ||||||||| | ||||||||
seq2  TTTTCCTTCAGCTGA--TAAATACCAATTTTTTATGTG  1130