BAC Information

Click to search

BAC

Clone NameB6Ng01-098D06
Chromosome15 (Build37)
Map Location 38,377,930 - 38,512,389
singlet/doubletdoublet
Overlap geneAzin1, Siah1-ps2
Upstream geneNcald, LOC100041313, LOC667534, Rrm2b, LOC100041478, Edd1, Odf1, LOC382986, LOC667563, Klf10
Downstream geneAtp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215, Rims2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098D06.bB6Ng01-098D06.g
ACCDH908359DH908360
length966824
definitionDH908359|Mus musculus domesticus DNA, BAC clone: B6Ng01-098D06, 5' end.DH908360|Mus musculus domesticus DNA, BAC clone: B6Ng01-098D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,511,417 - 38,512,389)(38,377,930 - 38,378,753)
sequence
gaattccacagtcaccttgacaaatggactgtgtgtccccttgattagga
agggacagaaacacaacttaaattagtttacaaacaaaggggagatagtt
gactgtaggcttaagggcagtctcctggagtcaagggtaaatctgtcagc
agagtctttggtggtcaggagaggagaatcctgagactttagttcctagt
catgggttcagcaacccccacgaccttcccacttcatgccaccctcctgc
tgatgtcatcacctgggagagttccttccttggtgctgtgagagatgact
gttgagccccctgtgctccagactaagcaactcctcatgcagactgaaag
acctcttcccttatggctgagttccctctcctaccctctttttgggtaga
aagttcccaggggaaaactgctcggcccagcctgggttgtgtgcccaaag
gaacacactaggcttgtgtttgtgtgttagggataaacccaggactccct
gccttcctaaagacccactctaccacagttatacctccaggcttcagact
gtaagagagctttttccagaaggaagctactgggtgttttcgtttgtttg
ttttttattattgttgttgtttgagaaaaggtctcatatcgagcaggttg
gcctcaaacccactatgtagctgagtttgaacttctgatcctactaactc
tgtctctcatgctgagatgacggatgagatggctcagtcaggaacgtgct
tggtgcacagcatgaggaagaaacccattacccatgtgtcttagtcaggt
ttctattcctgcacaaacatcatgaccaagaagcagttggggaagaaagg
gtttattcggcttacattccatactgctgttcatcaccaagaagtcagga
ctggactcaagcagttcagaaagcagagcctgatgcagagcatggaggga
tggtctttacttgctt
gaattccagactagtcagtgttatacagtgagactctgactccaaaaaaa
aaaaaagtatttacttttatgtatgtgagtagtttgactgcatgtatata
cacacaccacgtgcttgcagtgccaaggaggccagaagagagtctggact
ctcctggacctggagtcctaggcttgtgaggagctctatggggactgaga
accaaatctggatcctgcgcaagagcagcaactgctcttaactgccgagc
cttctctccatctccttctgggagcaggtttttaacgatctgctgtctct
cttcagcaaattctgagagaccccctgcctcctccccagacagataaggg
gaagcagaggccagagctgcgactcggccaccattttccctggggcaggg
cacacggcctctcaagcatagtcagaggcagcagcaggctgctgagctag
cctagagaggacagtcttgctctcctgtcctcgaagttccctcccctata
gctgagatgattggctcatatgtatctctcagcttgcagaatctcctctg
tgggaaagtggttgtgtggggggcagtgctgagcacctttggagacttat
gcttctgaggagggtctggggcagtgaagccagcagcactcagaaacaag
cagccctacaaattaagtcaatgcaaatgcactaattcattgccaggcct
tggtgaacgcaaggccagacaggatcctcagacaggatcctcagacagga
tcgcctggaatcggggtataaagaagtcacattcccatgagtctggagac
agtttgagatggtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_38511417_38512389
seq2: B6Ng01-098D06.b_48_1013 (reverse)

seq1  AAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTTC  50
      |||| |||||||| ||||||||||||  |||||||||||   ||||||||
seq2  AAGCAAGTAAAGACCATCCCTCCATG--CTCTGCATCAGGCTCTGCTTTC  48

seq1  TGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAACAGCAGTAT  100
      ||| ||||||||| |||||||||||||| |||||||||||||||||||||
seq2  TGAACTGCTTGAG-TCCAGTCCTGACTT-CTTGGTGATGAACAGCAGTAT  96

seq1  GGAATTGTAAGCCGAATAAACCCTTTCTTCCCCAACTGCTTCTTGGTCAT  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAA-TGTAAGCCGAATAAACCCTTTCTTCCCCAACTGCTTCTTGGTCAT  145

seq1  GATGTTTGTGCAGGAATAGAAACCCTGACTAAGACACATGGGTAATGGGT  200
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  GATGTTTGTGCAGGAATAGAAA-CCTGACTAAGACACATGGGTAATGGG-  193

seq1  TTTCTTCCTCATGCTGTGCACCAAGCACGTTCCTGACTGAGCCATCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTCATGCTGTGCACCAAGCACGTTCCTGACTGAGCCATCTCAT  243

seq1  CCGTCATCTCAGCATGAGAGACAGAGTTAGTAGGATCAGAAGTTCAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCATCTCAGCATGAGAGACAGAGTTAGTAGGATCAGAAGTTCAAACT  293

seq1  CAGCTACATAGTGGGTTTGAGGCCAACCTGCTCGATATGAGACCTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACATAGTGGGTTTGAGGCCAACCTGCTCGATATGAGACCTTTTCT  343

seq1  CAAACAACAACAATAATAAAAAACAAACAAACGAAAACACCCAGTAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACAACAATAATAAAAAACAAACAAACGAAAACACCCAGTAGCTT  393

seq1  CCTTCTGGAAAAAGCTCTCTTACAGTCTGAAGCCTGGAGGTATAACTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGAAAAAGCTCTCTTACAGTCTGAAGCCTGGAGGTATAACTGTG  443

seq1  GTAGAGTGGGTCTTTAGGAAGGCAGGGAGTCCTGGGTTTATCCCTAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTGGGTCTTTAGGAAGGCAGGGAGTCCTGGGTTTATCCCTAACAC  493

seq1  ACAAACACAAGCCTAGTGTGTTCCTTTGGGCACACAACCCAGGCTGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACAAGCCTAGTGTGTTCCTTTGGGCACACAACCCAGGCTGGGCC  543

seq1  GAGCAGTTTTCCCCTGGGAACTTTCTACCCAAAAAGAGGGTAGGAGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTTTTCCCCTGGGAACTTTCTACCCAAAAAGAGGGTAGGAGAGGG  593

seq1  AACTCAGCCATAAGGGAAGAGGTCTTTCAGTCTGCATGAGGAGTTGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGCCATAAGGGAAGAGGTCTTTCAGTCTGCATGAGGAGTTGCTTA  643

seq1  GTCTGGAGCACAGGGGGCTCAACAGTCATCTCTCACAGCACCAAGGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGCACAGGGGGCTCAACAGTCATCTCTCACAGCACCAAGGAAGG  693

seq1  AACTCTCCCAGGTGATGACATCAGCAGGAGGGTGGCATGAAGTGGGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCCAGGTGATGACATCAGCAGGAGGGTGGCATGAAGTGGGAAGG  743

seq1  TCGTGGGGGTTGCTGAACCCATGACTAGGAACTAAAGTCTCAGGATTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGGGGTTGCTGAACCCATGACTAGGAACTAAAGTCTCAGGATTCTC  793

seq1  CTCTCCTGACCACCAAAGACTCTGCTGACAGATTTACCCTTGACTCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGACCACCAAAGACTCTGCTGACAGATTTACCCTTGACTCCAGG  843

seq1  AGACTGCCCTTAAGCCTACAGTCAACTATCTCCCCTTTGTTTGTAAACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCCCTTAAGCCTACAGTCAACTATCTCCCCTTTGTTTGTAAACTA  893

seq1  ATTTAAGTTGTGTTTCTGTCCCTTCCTAATCAAGGGGACACACAGTCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGTTGTGTTTCTGTCCCTTCCTAATCAAGGGGACACACAGTCCAT  943

seq1  TTGTCAAGGTGACTGTGGAATTC  973
      |||||||||||||||||||||||
seq2  TTGTCAAGGTGACTGTGGAATTC  966

seq1: chr15_38377930_38378753
seq2: B6Ng01-098D06.g_69_892

seq1  GAATTCCAGACTAGTCAGTGTTATACAGTGAGACTCTGACTCCAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACTAGTCAGTGTTATACAGTGAGACTCTGACTCCAAAAAAA  50

seq1  AAAAAAGTATTTACTTTTATGTATGTGAGTAGTTTGACTGCATGTATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTATTTACTTTTATGTATGTGAGTAGTTTGACTGCATGTATATA  100

seq1  CACACACCACGTGCTTGCAGTGCCAAGGAGGCCAGAAGAGAGTCTGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCACGTGCTTGCAGTGCCAAGGAGGCCAGAAGAGAGTCTGGACT  150

seq1  CTCCTGGACCTGGAGTCCTAGGCTTGTGAGGAGCTCTATGGGGACTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGACCTGGAGTCCTAGGCTTGTGAGGAGCTCTATGGGGACTGAGA  200

seq1  ACCAAATCTGGATCCTGCGCAAGAGCAGCAACTGCTCTTAACTGCCGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATCTGGATCCTGCGCAAGAGCAGCAACTGCTCTTAACTGCCGAGC  250

seq1  CTTCTCTCCATCTCCTTCTGGGAGCAGGTTTTTAACGATCTGCTGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCCATCTCCTTCTGGGAGCAGGTTTTTAACGATCTGCTGTCTCT  300

seq1  CTTCAGCAAATTCTGAGAGACCCCCTGCCTCCTCCCCAGACAGATAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCAAATTCTGAGAGACCCCCTGCCTCCTCCCCAGACAGATAAGGG  350

seq1  GAAGCAGAGGCCAGAGCTGCGACTCGGCCACCATTTTCCCTGGGGCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAGGCCAGAGCTGCGACTCGGCCACCATTTTCCCTGGGGCAGGG  400

seq1  CACACGGCCTCTCAAGCATAGTCAGAGGCAGCAGCAGGCTGCTGAGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGCCTCTCAAGCATAGTCAGAGGCAGCAGCAGGCTGCTGAGCTAG  450

seq1  CCTAGAGAGGACAGTCTTGCTCTCCTGTCCTCGAAGTTCCCTCCCCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGAGGACAGTCTTGCTCTCCTGTCCTCGAAGTTCCCTCCCCTATA  500

seq1  GCTGAGATGATTGGCTCATATGTATCTCTCAGCTTGCAGAATCTCCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGATGATTGGCTCATATGTATCTCTCAGCTTGCAGAATCTCCTCTG  550

seq1  TGGGAAAGTGGTTGTGTGGGGGGCAGTGCTGAGCACCTTTGGAGACTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGTGGTTGTGTGGGGGGCAGTGCTGAGCACCTTTGGAGACTTAT  600

seq1  GCTTCTGAGGAGGGTCTGGGGCAGTGAAGCCAGCAGCACTCAGAAACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGAGGAGGGTCTGGGGCAGTGAAGCCAGCAGCACTCAGAAACAAG  650

seq1  CAGCCCTACAAATTAAGTCAATGCAAATGCACTAATTCATTGCCAGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTACAAATTAAGTCAATGCAAATGCACTAATTCATTGCCAGGCCT  700

seq1  TGGTGAACGCAAGGCCAGACAGGATCCTCAGACAGGATCCTCAGACAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAACGCAAGGCCAGACAGGATCCTCAGACAGGATCCTCAGACAGGA  750

seq1  TCGCCTGGAATCGGGGTATAAAGAAGTCACATTCCCATGAGTCTGGAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTGGAATCGGGGTATAAAGAAGTCACATTCCCATGAGTCTGGAGAC  800

seq1  AGTTTGAGATGGTGTGTGTGTGTG  824
      ||||||||||||||||||||||||
seq2  AGTTTGAGATGGTGTGTGTGTGTG  824