BAC Information

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BAC

Clone NameB6Ng01-098I09
Chromosome15 (Build37)
Map Location 50,546,691 - 50,709,175
singlet/doubletdoublet
Overlap geneTrps1
Upstream geneLOC665160
Downstream geneLOC100039644, LOC100039662, Eif3s3, LOC100039679, D530033C11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098I09.bB6Ng01-098I09.g
ACCDH908591DH908592
length1,110862
definitionDH908591|Mus musculus domesticus DNA, BAC clone: B6Ng01-098I09, 5' end.DH908592|Mus musculus domesticus DNA, BAC clone: B6Ng01-098I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,546,691 - 50,547,815)(50,708,312 - 50,709,175)
sequence
gaattctttgggaataaaaacaattccctttgattaaatgaacaaatgaa
cagggtcccatatgagaattctttaaaaaaaaaaacaaaaaaaaacctcc
cagaattaaagggagtaataatgaagcaaagggtgggtggaaaactgggc
attttccaaactcttggtaagtcacttgttaagtgtgtggttactgtatc
tgagttagacacagtctctaaggacaattaaaccctaaactaagcaaaat
acaatggtctctgcaaaagattttcaattccaatagcaaaaaccctgacg
agcacgttagaagagttattcttaaagtgcacatcgcactgatgatgatg
gcttttgcctaccagagaagttcatatgcacggggcggacactggaaacc
aaagactcataataaaacagacacaatatattacttatctaaaatatgtt
ggacttcatgtaacacacacatgcacacactaaacccaacaaaactcaga
attcacaacatgaaacagtgtgacaaggttctctttaaaggtgtttacga
ggctccttgatcattattaccgttgacatcacaaacacaggttttgaaga
ttaagaattaaccagaattgcagcagctgggtggaagaagggagtgtttt
ggcggcggctcctgtaaatgggctaaatgagagtaaatgttttccttctt
attgttttatccatatttcctaattgaatatagcaaaaatcaaattgtca
tttctaaaccaaaggccattaatggttgacacttatttatttttaaacca
accactgaaacataaacactatgctttgataaacttctagcttaattctt
ttgaaagctttagaagtagaactcttctctcttgatcatgaagcttacac
actgtgttccaggcccaccctgcacatgactggtcttgatagatcaccta
ttctataagtggatgagtacagaatatcaaccgactgccttcttgactct
accacagccaaggtatattcatttccgaacctctctagtactatattgat
gcaaacttaaccttcaattttctacaacattatttagcatttctcactca
atttactaaa
gaattcccactttaaagaagagagacttccctgtgacatattttaggggt
gtgtgtggagggtgtttaattgtaaagaaaagtctctctgcacctgtatg
tttttcctgactactggtgatgatgacaggcattctcacagtgtagttat
gtacagaaagaaggccctggccatagggaaatcacagtcctgtttatatg
taagagaaaaaaaaatgtttccatttgaaatagatgtacttctccctaaa
gagggacgcacggagttttaaactccctttcactggaagaaggagtaggg
ccagagacaacagggttggaatttccaacgaagtgtatttagaagtagtt
ttgtgtctctactggtggagatgagactgctccaagcagttacctcctct
tttgtctgcagtgatgtcaggcaagaatttagccagaactctccagtggg
gctttctcagcattgaggaattaggatactgtaaggttctccaaatcatg
ttttgggtgttattttgaaatgacaaatttaaatttgaattataataatg
aaatcagaatggtacttttagatttaatttgaagccagtacttacagata
gtgaaaagtttaacaggctttttttttttttttcttcacattttcctatg
taggaaaaaaaaaggggaggtggggggggattcactcattcgactagcac
cagagaaatagtaggttggactttatttccacaatgtatgattgcattat
gatatgtatatggctgaatttcaggggcaaaatgaaagaccttttcaagg
gatttcaataaggaaatcattaataaagggaactgatggtccaatgaatt
aaatcacctgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50546691_50547815
seq2: B6Ng01-098I09.b_41_1150

seq1  GAATTCTTTGGGAATAAAAACAATTCCCTTTGAATAAATGAACAAATGAA  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCTTTGGGAATAAAAACAATTCCCTTTGATTAAATGAACAAATGAA  50

seq1  CAGGGTCCCATATGAGAATTCTTTAAAAAAAAAAACAAAAAAAAACCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCCCATATGAGAATTCTTTAAAAAAAAAAACAAAAAAAAACCTCC  100

seq1  CAGAATTAAAGGGAGTAATAATGAAGCAAAGGGTGGGTGGAAAACTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTAAAGGGAGTAATAATGAAGCAAAGGGTGGGTGGAAAACTGGGC  150

seq1  ATTTTCCAAACTCTTGGTAAGTCACTTGTTAAGTGTGTGGTTACTGTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCAAACTCTTGGTAAGTCACTTGTTAAGTGTGTGGTTACTGTATC  200

seq1  TGAGTTAGACACAGTCTCTAAGGACAATTAAACCCTAAACTAAGCAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAGACACAGTCTCTAAGGACAATTAAACCCTAAACTAAGCAAAAT  250

seq1  ACAATGGTCTCTGCAAAAGATTTTCAATTCCAATAGCAAAAACCCTGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGTCTCTGCAAAAGATTTTCAATTCCAATAGCAAAAACCCTGACG  300

seq1  AGCACGTTAGAAGAGTTATTCTTAAAGTGCACATCGCACTGATGATGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTTAGAAGAGTTATTCTTAAAGTGCACATCGCACTGATGATGATG  350

seq1  GCTTTTGCCTACCAGAGAAGTTCATATGCACGGGGCGGACACTGGAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGCCTACCAGAGAAGTTCATATGCACGGGGCGGACACTGGAAACC  400

seq1  AAAGACTCATAATAAAACAGACACAATATATTACTTATCTAAAATATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTCATAATAAAACAGACACAATATATTACTTATCTAAAATATGTT  450

seq1  GGACTTCATGTAACACACACATGCACACACTAAACCCAACAAAACTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCATGTAACACACACATGCACACACTAAACCCAACAAAACTCAGA  500

seq1  ATTCACAACATGAAACAGTGTGACAAGGTTCTCTTTAAAGGTGTTTACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAACATGAAACAGTGTGACAAGGTTCTCTTTAAAGGTGTTTACGA  550

seq1  GGCTCCTTGATCATTATTACCGTTGACATCACAAACACAGGTTTTGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTTGATCATTATTACCGTTGACATCACAAACACAGGTTTTGAAGA  600

seq1  TTAAGAATTAACCAGAATTGCAGCAGCTGGGTGGAAGAAGGGAGTG-TTT  649
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAAGAATTAACCAGAATTGCAGCAGCTGGGTGGAAGAAGGGAGTGTTTT  650

seq1  GGCGGCGGCTCCTGTAAATGGGCTAAATGAGAGTAAATGTTTTCCTTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCGGCTCCTGTAAATGGGCTAAATGAGAGTAAATGTTTTCCTTCTT  700

seq1  ATTGTTTTATCCATATTTCCTAATTGAATATAGCAAAAATCAAATTGTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTATCCATATTTCCTAATTGAATATAGCAAAAATCAAATTGTCA  750

seq1  TTTCTAAACCAAAGGCCATTAATGGTTGACACTTATTTATTTTAAAACCA  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTCTAAACCAAAGGCCATTAATGGTTGACACTTATTTATTTTTAAACCA  800

seq1  ACCACTGAAACATAAAACACTATGCATTTGATAAACTTCTAGCTTAATTC  849
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  ACCACTGAAACAT-AAACACTATGC-TTTGATAAACTTCTAGCTTAATTC  848

seq1  TTTTGAAAGCCTTTAGAAGTAGAACTC-TCTCTCTTGATCATGAAAGGCT  898
      ||||||||| ||||||||||||||||| |||||||||||||||||  |||
seq2  TTTTGAAAG-CTTTAGAAGTAGAACTCTTCTCTCTTGATCATGAA--GCT  895

seq1  TAACACACTGTGTTCCCAGGCCCACCCTGCACATGACTGGTCTTTGATAG  948
      | |||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  T-ACACACTGTGTT-CCAGGCCCACCCTGCACATGACTGGTC-TTGATAG  942

seq1  ATCAACTATTTCTATGAAGTGGATGAGTACAGAATATCAACCGACTGCC-  997
      |||| ||| |||||| ||||||||||||||||||||||||||||||||| 
seq2  ATCACCTA-TTCTAT-AAGTGGATGAGTACAGAATATCAACCGACTGCCT  990

seq1  TCTTGACTCTAACAACAG-CAAGGTATATTCATTTCCAGAACTCTCTAAG  1046
      |||||||||| || |||| ||||||||||||||||||  | |||||| ||
seq2  TCTTGACTCT-ACCACAGCCAAGGTATATTCATTTCCGAACCTCTCT-AG  1038

seq1  TACTTATTATTTGTATGCATACTATACTCTTTTCAATTTTCTAACAACAT  1096
      |||    ||| |  ||||| |||  ||    ||||||||||| |||||||
seq2  TAC----TATATTGATGCAAACTTAAC---CTTCAATTTTCT-ACAACAT  1080

seq1  TATTTAGCATTTCT-ACTCTATTTACTAAA  1125
      |||||||||||||| |||| ||||||||||
seq2  TATTTAGCATTTCTCACTCAATTTACTAAA  1110

seq1: chr15_50708312_50709175
seq2: B6Ng01-098I09.g_67_928 (reverse)

seq1  CGCAGGTGATTTAATTCATTGGACCATCAGTTCCCTTTATTAAGTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CGCAGGTGATTTAATTCATTGGACCATCAGTTCCCTTTATTAA-TGATTT  49

seq1  CCTTATTGTAAATCCATTGAAAAGGTACATTCATTTTGCCCCTGAAATTC  100
      |||||||| |||||| |||||||||| | |||||||||||||||||||||
seq2  CCTTATTG-AAATCCCTTGAAAAGGT-CTTTCATTTTGCCCCTGAAATTC  97

seq1  AGCCATATAACATATCATATAGCATATCATACATTGTGGAAATAAAGT-C  149
      |||||||| ||||||||||  ||| ||||||||||||||||||||||| |
seq2  AGCCATAT-ACATATCATAATGCA-ATCATACATTGTGGAAATAAAGTCC  145

seq1  AACCTACTATTTCTCTGGTGCTAGTCGAATGAGTGAATCCCCCCCCACCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACTATTTCTCTGGTGCTAGTCGAATGAGTGAATCCCCCCCCACCT  195

seq1  CCCCTTTTTTTTTCCTACATAGGAAAATGTGAAG--AAAAAAAAAAAAAG  247
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  CCCCTTTTTTTTTCCTACATAGGAAAATGTGAAGAAAAAAAAAAAAAAAG  245

seq1  CCTGTTAAACTTTTCACTATCTGTAAGTACTGGCTTCAAATTAAATCTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAAACTTTTCACTATCTGTAAGTACTGGCTTCAAATTAAATCTAA  295

seq1  AAGTACCATTCTGATTTCATTATTATAATTCAAATTTAAATTTGTCATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCATTCTGATTTCATTATTATAATTCAAATTTAAATTTGTCATTT  345

seq1  CAAAATAACACCCAAAACATGATTTGGAGAACCTTACAGTATCCTAATTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAACACCCAAAACATGATTTGGAGAACCTTACAGTATCCTAATTC  395

seq1  CTCAATGCTGAGAAAGCCCCACTGGAGAGTTCTGGCTAAATTCTTGCCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGCTGAGAAAGCCCCACTGGAGAGTTCTGGCTAAATTCTTGCCTG  445

seq1  ACATCACTGCAGACAAAAGAGGAGGTAACTGCTTGGAGCAGTCTCATCTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACTGCAGACAAAAGAGGAGGTAACTGCTTGGAGCAGTCTCATCTC  495

seq1  CACCAGTAGAGACACAAAACTACTTCTAAATACACTTCGTTGGAAATTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTAGAGACACAAAACTACTTCTAAATACACTTCGTTGGAAATTCC  545

seq1  AACCCTGTTGTCTCTGGCCCTACTCCTTCTTCCAGTGAAAGGGAGTTTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTTGTCTCTGGCCCTACTCCTTCTTCCAGTGAAAGGGAGTTTAA  595

seq1  AACTCCGTGCGTCCCTCTTTAGGGAGAAGTACATCTATTTCAAATGGAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCGTGCGTCCCTCTTTAGGGAGAAGTACATCTATTTCAAATGGAAA  645

seq1  CATTTTTTTTTCTCTTACATATAAACAGGACTGTGATTTCCCTATGGCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTTCTCTTACATATAAACAGGACTGTGATTTCCCTATGGCCA  695

seq1  GGGCCTTCTTTCTGTACATAACTACACTGTGAGAATGCCTGTCATCATCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTCTTTCTGTACATAACTACACTGTGAGAATGCCTGTCATCATCA  745

seq1  CCAGTAGTCAGGAAAAACATACAGGTGCAGAGAGACTTTTCTTTACAATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGTCAGGAAAAACATACAGGTGCAGAGAGACTTTTCTTTACAATT  795

seq1  AAACACCCTCCACACACACCCCTAAAATATGTCACAGGGAAGTCTCTCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCCTCCACACACACCCCTAAAATATGTCACAGGGAAGTCTCTCTT  845

seq1  CTTTAAAGTGGGAATTC  864
      |||||||||||||||||
seq2  CTTTAAAGTGGGAATTC  862