BAC Information

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BAC

Clone NameB6Ng01-098N21
Chromosome15 (Build37)
Map Location 16,667,600 - 16,818,084
singlet/doubletdoublet
Overlap geneCdh9
Upstream geneEG239341, LOC100040087, LOC624183, LOC100040119
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098N21.bB6Ng01-098N21.g
ACCDH908823DH908824
length1,0921,086
definitionDH908823|Mus musculus domesticus DNA, BAC clone: B6Ng01-098N21, 5' end.DH908824|Mus musculus domesticus DNA, BAC clone: B6Ng01-098N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,667,600 - 16,668,693)(16,817,525 - 16,818,084)
sequence
gaattcattacatgccgggaactaatgtgatcctgtcaatatggcccacc
accaattttagaaacgcatttgctctctccaccaccctgctttcactgtc
tgactggaaaaggacctgggagggagataaatgggaggtaaagccacaga
atttgagaagagattgcagaacgagggtagcatgtctttagataagaaca
aacataacacatacaggaggaatgcctcacacataaagccacaacctgtg
gactcaaaaacgtaaagcaaagcataaaaatcaagaaatagaaaaaaatt
taagctacccttataaactcagtgctcttaagggaggtagattgggagaa
attaattttcaacatgctctcatattggcttttggcctccagagaaacat
aatttattacttttattctccatgttaagaatcaactgcatcattcatca
tattccagtgtttagtatagaatgacaatctctctgaacattggcctgcg
tggtggaagtgacacttgtgatatagccaccttctcaggatcctgtatta
agagttcatttttccttccttttagttgagttatgatgaacatggttttt
tatgttactttatactacttcatattattttatactatgcatatatttat
ttgctcatttggaattactcctcactaaacttctgctgacttaacagaga
acagttagtaaagtagtaatatcctaaggtgatcatgacagtagatgcca
gtgttccaaatactgtcaattttcagcattcctttcagctaatgatggtg
acaaaaatctctcctctgttcaccctctatgtgtgatatatgtgtgtgta
ctctacacaaaagcacacaaacataaacaccttacattttaactgtgtag
tttagaacaatataatatatcatgacatgccttccagattacattaaatt
cattcaaaacaaattttgttcagtgtgcgttttctttctgcattataaac
atttcttcatccacttcagctttgcagaagtttttgtagctcagtttact
ctgggaaattgttactgttgtgaaatttgtacaatattagtt
gaattctttcctaggttttctaactccagtgttgcctcactttgggtttt
ctttattgtgtctacttccctttttaggtcttggatgattttattcagtt
ccatcacctgtttggtcctgttttcctgcaattctttaagggatttgtgt
gcttcctctttaagatcttctacctgtttagtactgttctcctgtatttc
tttaagtgagttattaaaattcttcttgatgtcttctaccatcatcatga
gatatgcctttaagtcagggactatcttttcgggtgtgttggggtgctca
ggactgggtggagtgtgagtgctgtgttctgatgatggtgagtggtcttg
gtttctgttagtaagattcttacgttttcctttcaccatctggtaatctt
tggagttagttgctgtagttgtctctggttagagattgttcctcaggtga
ttatgttagcctctatcagcagaccttcgagactagctctctcctaagtt
tcagtgttcagagtactctctgcaggcaagctctcctcttgcagtgaagg
tgcccagatatctggtgttcgaacttgcctcttggcagaagctgtgttcc
actcaccgtaggtcttaagatcccatggagggtcctgtgtgtaccttgtg
gatgtccgcagactgtgcccaaggtatcccggtgcctgcgtggaccggaa
gggacttgtgactctgatcaggccaggttttctgcttctctaattaatat
taattttcttcattataatttttaatttctctcttaagtgtttttcttag
aatatacatttttttttttacaacaagtcgttactttttgggaaaaggag
atcaacaagaggggagatagactgagagttatgagagtaaatatgggatc
agattattatttataatgtataaacttacataattttcctttttccttta
aacttactactctgcaccaaaaatattgaattaaaggtctgccatcagaa
aatataaattgctacacacttggaattgcagggtcaaatttcataaaaaa
gaaagatatctctggtaatatcgggattcttagtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16667600_16668693
seq2: B6Ng01-098N21.b_47_1138

seq1  GAATTCATTACATGCCGGGAACTAATGTGATCCTGTCAATATGGCCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACATGCCGGGAACTAATGTGATCCTGTCAATATGGCCCACC  50

seq1  ACCAATTTTAGAAACGCATTTGCTCTCTCCACCACCCTGCTTTCACTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTTTAGAAACGCATTTGCTCTCTCCACCACCCTGCTTTCACTGTC  100

seq1  TGACTGGAAAAGGACCTGGGAGGGAGATAAATGGGAGGTAAAGCCACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGAAAAGGACCTGGGAGGGAGATAAATGGGAGGTAAAGCCACAGA  150

seq1  ATTTGAGAAGAGATTGCAGAACGAGGGTAGCATGTCTTTAGATAAGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGAAGAGATTGCAGAACGAGGGTAGCATGTCTTTAGATAAGAACA  200

seq1  AACATAACACATACAGGAGGAATGCCTCACACATAAAGCCACAACCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAACACATACAGGAGGAATGCCTCACACATAAAGCCACAACCTGTG  250

seq1  GACTCAAAAACGTAAAGCAAAGCATAAAAATCAAGAAATAGAAAAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAAAACGTAAAGCAAAGCATAAAAATCAAGAAATAGAAAAAAATT  300

seq1  TAAGCTACCCTTATAAACTCAGTGCTCTTAAGGGAGGTAGATTGGGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTACCCTTATAAACTCAGTGCTCTTAAGGGAGGTAGATTGGGAGAA  350

seq1  ATTAATTTTCAACATGCTCTCATATTGGCTTTTGGCCTCCAGAGAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTTCAACATGCTCTCATATTGGCTTTTGGCCTCCAGAGAAACAT  400

seq1  AATTTATTACTTTTATTCTCCATGTTAAGAATCAACTGCATCATTCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTACTTTTATTCTCCATGTTAAGAATCAACTGCATCATTCATCA  450

seq1  TATTCCAGTGTTTAGTATAGAATGACAATCTCTCTGAACATTGGCCTGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGTGTTTAGTATAGAATGACAATCTCTCTGAACATTGGCCTGCG  500

seq1  TGGTGGAAGTGACACTTGTGATATAGCCACCTTCTCAGGATCCTGTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAAGTGACACTTGTGATATAGCCACCTTCTCAGGATCCTGTATTA  550

seq1  AGAGTTCATTTTTCCTTCCTTTTAGTTGAGTTATGATGAACATGGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCATTTTTCCTTCCTTTTAGTTGAGTTATGATGAACATGGTTTTT  600

seq1  TATGTTACTTTATACTACTTCATATTATTTTATACTATGCATATATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTACTTTATACTACTTCATATTATTTTATACTATGCATATATTTAT  650

seq1  TTGCTCATTTGGAATTACTCCTCACTAAACTTCTGCTGACTTAACAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATTTGGAATTACTCCTCACTAAACTTCTGCTGACTTAACAGAGA  700

seq1  ACAGTTAGTAAAGTAGTAATATCCTAAGGTGATCATGACAGTAGATGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAGTAAAGTAGTAATATCCTAAGGTGATCATGACAGTAGATGCCA  750

seq1  GTGTTCCAAATACTGTCAATTTTCAGGCATTCCTTTCAGCTAATGATGGT  800
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGTTCCAAATACTGTCAATTTTCA-GCATTCCTTTCAGCTAATGATGGT  799

seq1  GACAAAAATCTCTCCTCTGTTCACCCTCTATGTGTGATATATGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAATCTCTCCTCTGTTCACCCTCTATGTGTGATATATGTGTGTGT  849

seq1  ACTCTACACAAAAGCACACAAACATAAACACCTTACATTTTAACTGTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACACAAAAGCACACAAACATAAACACCTTACATTTTAACTGTGTA  899

seq1  GTTTAGAACAAATATAATATATCATGACATGCCTTCCAGATTACATTAAA  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAAC-AATATAATATATCATGACATGCCTTCCAGATTACATTAAA  948

seq1  TTCATTCAAAACAAATTTTGTTCAGTGTGCGTTT--CTTCTGCATTATAA  998
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  TTCATTCAAAACAAATTTTGTTCAGTGTGCGTTTTCTTTCTGCATTATAA  998

seq1  ACA-TTCTCCAT-CACTTCAGCTTTGCAGAAAGGTTTTGTAGCTCAGGTT  1046
      ||| |||| ||| |||||||||||||||| ||| ||||||||||||| ||
seq2  ACATTTCTTCATCCACTTCAGCTTTGCAG-AAGTTTTTGTAGCTCAGTTT  1047

seq1  ACTCTGGGAAATTGTTACTGGTGGTGAAAATTGGTACAATAATTAGTT  1094
      ||||||||||||||||||| || ||| ||||| ||||||| |||||||
seq2  ACTCTGGGAAATTGTTACT-GTTGTG-AAATTTGTACAAT-ATTAGTT  1092

seq1: chr15_16817525_16818084
seq2: B6Ng01-098N21.g_592_1153 (reverse)

seq1  TAACTAAGAAT-ACAATATTAACAGAGAAATCTTTCTTTTTTATTTGAAA  49
      |||||||||||  | |||||| |||||| ||||||||||||||  |||||
seq2  TAACTAAGAATCCCGATATTACCAGAGATATCTTTCTTTTTTA--TGAAA  48

seq1  -TTGACCCTGCAATTTCAAGTGTGGTAGCAATTATATA-TTTCTGATGGC  97
       |||||||||||||| ||||||| ||||||||| |||| |||||||||||
seq2  TTTGACCCTGCAATTCCAAGTGT-GTAGCAATT-TATATTTTCTGATGGC  96

seq1  AGACCTTTAATTCAAATATTTTGGTGCAGAGTAGTAAGTTTAAAGGAAAA  147
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  AGACCTTTAATTCAATATTTTTGGTGCAGAGTAGTAAGTTTAAAGGAAAA  146

seq1  GGAAAATTTATGTAAGTTTTATACATTAT-AATAATATTCTGAT-CCATA  195
       | ||| ||||||||| |||||||||||| ||||||| |||||| |||||
seq2  AGGAAAATTATGTAAG-TTTATACATTATAAATAATAATCTGATCCCATA  195

seq1  TTTACTCTCATTACTCTCAGTCTATCTTCCCTCTTGTTGATCTCCTTTT-  244
      ||||||||||| ||||||||||||||| ||||||||||||||||||||| 
seq2  TTTACTCTCATAACTCTCAGTCTATCTCCCCTCTTGTTGATCTCCTTTTC  245

seq1  CCAAAAAGTAACGACTTGTTGT-AAAAAAAAAATGTATATTCTAAGAAAA  293
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCAAAAAGTAACGACTTGTTGTAAAAAAAAAAATGTATATTCTAAGAAAA  295

seq1  ACACTTAAGAGAGAAATTAAAAATTATAATGAAGAAAATTAATATTAATT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAAGAGAGAAATTAAAAATTATAATGAAGAAAATTAATATTAATT  345

seq1  AGAGAAGCAGAAAACCTGGCCTGATCAGAGTCACAAGTCCCTTCCGGTCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCAGAAAACCTGGCCTGATCAGAGTCACAAGTCCCTTCCGGTCC  395

seq1  ACGCAGGCACCGGGATACCTTGGGCACAGTCTGCGGACATCCACAAGGTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGGCACCGGGATACCTTGGGCACAGTCTGCGGACATCCACAAGGTA  445

seq1  CACACAGGACCCTCCATGGGATCTTAAGACCTACGGTGAGTGGAACACAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGACCCTCCATGGGATCTTAAGACCTACGGTGAGTGGAACACAG  495

seq1  CTTCTGCCAAGAGGCAAGTTCGAACACCAGATATCTGGGCACCTTCACTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCAAGAGGCAAGTTCGAACACCAGATATCTGGGCACCTTCACTG  545

seq1  CAAGAGGAGAGCTTGCC  560
      |||||||||||||||||
seq2  CAAGAGGAGAGCTTGCC  562