BAC Information

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BAC

Clone NameB6Ng01-099A09
Chromosome15 (Build37)X (Build37)
Map Location 16,630,946 - 16,631,933134,342,951 - 134,343,466
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183, LOC100040119
Downstream geneCdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099A09.bB6Ng01-099A09.g
ACCDH908935DH908936
length1,1281,147
definitionDH908935|Mus musculus domesticus DNA, BAC clone: B6Ng01-099A09, 5' end.DH908936|Mus musculus domesticus DNA, BAC clone: B6Ng01-099A09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,630,946 - 16,631,933)(134,342,951 - 134,343,466)
sequence
gaattccaatgacccacaataaaagatggttcccaatgtctggggctgag
gattttgtcagaaaatttatggctctcaggtataatattatcactctaag
tgaaaatctttgcaggagaggatactggtgaatatgcagctttggttgca
gtagaaaccacccaactgaatgggacatggaaaaagagcagaggtttggt
actgtacagcagagtcagagtcctcaaagggagacaaggatgcctctggt
gaagatgctagcttcagtgcacacacaaacacagtgaaaaatgacaggac
aatctcataaccaaaaaggacagtaacagctatgaaatggatccaaccta
cacctctgaaatgagctgtatttgctctgaagagaagagtcttggaggta
gaaaggccaaaatttttgggactcaggatataacaaatgaatcaatctca
catgaagtacattgaactataagctttgatttacactgttgtgttttggc
tttgcatttatttgattacttccatgatttgattatctccttttgaaata
aaagcatatgcaacttattttagctcttacaaaagggatttcagtattta
gtgagaccttggatatcttaaagagactaaaatcttaaagacagtaagaa
attttctgtatttcttactgtattggttagtttaatgtcaaattgacagg
actagattcaactgaggggagggaaccaaaaccaaggcaatgcctctata
agatcaggctgtaggctggcatgtaaatatgagggaggatcgaattcatt
gtgggtggtttttctcctgtgtgggacccgtggaagtgaatcttgtggag
gaagaagcaggagatgtaagctaaataaattctttcctaaccaagtgact
tctggttatgttgtttcatcacagcaagataactccagccacaatagtta
tactctattttatattgtcatattgatatttaaatgagattttagtgatg
aacagaaagaaatttatcatttaatagtaatgttgttggtgtgtgaagca
gacctgagttaaataggcttcgctatgtttttttttttgttatttgtttg
ttttggtcaactggacataagcctagaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctgtcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccagtctggaaatcagtctggtggttcctca
gaaaattggacatagtcctaccggaagatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcaccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagattgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggacttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagacgatgctggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctctat
ggaggagctagagaagtagccaaggagctaaagggatctgcaatcctata
gtggacacattatgactaccagtactctcggagcttctgactctagctgc
atatgtatcaaagatggctagtcagcatcactttaagagaaggtccattg
acatgtcaacttttatatgctcagtcaggggactcttagagctcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16630946_16631933
seq2: B6Ng01-099A09.b_188_1173

seq1  TGGTTGCAGTAGAAACCACCCAACTGAATGGGACATGGAAAAAGAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCAGTAGAAACCACCCAACTGAATGGGACATGGAAAAAGAGCAGA  50

seq1  GGTTTGGTACTGTACAGCAGAGTCAGAGTCCTCAAAGGGAGACAAGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGTACTGTACAGCAGAGTCAGAGTCCTCAAAGGGAGACAAGGATG  100

seq1  CCTCTGGTGAAGATGCTAGCTTCAGTGCACACACAAACACAGTGAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGTGAAGATGCTAGCTTCAGTGCACACACAAACACAGTGAAAAAT  150

seq1  GACAGGACAATCTCATAACCAAAAAGGACAGTAACAGCTATGAAATGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGACAATCTCATAACCAAAAAGGACAGTAACAGCTATGAAATGGAT  200

seq1  CCAACCTACACCTCTGAAATGAGCTGTATTTGCTCTGAAGAGAAGAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTACACCTCTGAAATGAGCTGTATTTGCTCTGAAGAGAAGAGTCT  250

seq1  TGGAGGTAGAAAGGCCAAAATTTTTGGGACTCAGGATATAACAAATGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTAGAAAGGCCAAAATTTTTGGGACTCAGGATATAACAAATGAAT  300

seq1  CAATCTCACATGAAGTACATTGAACTATAAGCTTTGATTTACACTGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCACATGAAGTACATTGAACTATAAGCTTTGATTTACACTGTTGT  350

seq1  GTTTTGGCTTTGCATTTATTTGATTACTTCCATGATTTGATTATCTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGCTTTGCATTTATTTGATTACTTCCATGATTTGATTATCTCCTT  400

seq1  TTGAAATAAAAGCATATGCAACTTATTTTAGCTCTTACAAAAGGGATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAAAAGCATATGCAACTTATTTTAGCTCTTACAAAAGGGATTTC  450

seq1  AGTATTTAGTGAGACCTTGGATATCTTAAAGAGACTAAAATCTTAAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAGTGAGACCTTGGATATCTTAAAGAGACTAAAATCTTAAAGAC  500

seq1  AGTAAGAAATTTTCTGTATTTCTTACTGTATTGGTTAGTTTAATGTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAAATTTTCTGTATTTCTTACTGTATTGGTTAGTTTAATGTCAAA  550

seq1  TTGACAGGACTAGATTCAACTGAGGGGAGGGAACCAAAACCAAGGCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGGACTAGATTCAACTGAGGGGAGGGAACCAAAACCAAGGCAATG  600

seq1  CCTCTATAAGATCAGGCTGTAGGCTGGCATGTAAATATGAGGGAGGATCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATAAGATCAGGCTGTAGGCTGGCATGTAAATATGAGGGAGGATCG  650

seq1  AATTCATTGTGGGTGGTTTTTCTCCTGTGTGGGACCCGTGGAAGTGAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTGTGGGTGGTTTTTCTCCTGTGTGGGACCCGTGGAAGTGAATC  700

seq1  TTGTGGAGGAAGAAGCAGGAGATGTAAGCTAAATAAATTCTTTCCTAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAGGAAGAAGCAGGAGATGTAAGCTAAATAAATTCTTTCCTAACC  750

seq1  AAGTGACTTCTGGTTATGTTGTTTCATCACAGCAAAGATAACTCCAGCCA  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGTGACTTCTGGTTATGTTGTTTCATCACAGC-AAGATAACTCCAGCCA  799

seq1  CAATAGTTATACTCTATTTTATATTGTCATATTGATATTTAAATGAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTTATACTCTATTTTATATTGTCATATTGATATTTAAATGAGATT  849

seq1  TTAGTGATGAACAAGAAAGAAAATTTATCATTTAATAGTAATG-TGTTGG  899
      |||||||||||| |||||| ||||||||||||||||||||||| ||||||
seq2  TTAGTGATGAAC-AGAAAG-AAATTTATCATTTAATAGTAATGTTGTTGG  897

seq1  TGTGTGAAGCAGACCTGAGTTAAATA-GCCTCGCTATTGTTTTTTTTTTT  948
      |||||||||||||||||||||||||| || |||||| |||||||||||||
seq2  TGTGTGAAGCAGACCTGAGTTAAATAGGCTTCGCTA-TGTTTTTTTTTTT  946

seq1  GTTTATTTGTTTGTTTTTGTCAACTTGACAT-AGTCTAGAA  988
      | ||||||||||||||| ||||||| ||||| || ||||||
seq2  G-TTATTTGTTTGTTTTGGTCAACTGGACATAAGCCTAGAA  986

seq1: chrX_134342951_134343466
seq2: B6Ng01-099A09.g_837_1215 (reverse)

seq1  TTTGAGCTCTAAGAGTCCCATGTCTACACTTTTTTAAAATTGGGTATTTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCATTTACATTTCCAATGCTATCCCAAAAGTCCTCCACACGCTCCCCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CACCCCCCCACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGA  150
                            | |  || ||   | ||||||| |||||
seq2  ----------------------TTTGAGCTCTAAGAGTCCCCTG-ACTGA  27

seq1  GGCATAT-AAAGTTTGCACGACTAATGGGCCTCTCT-TTCCAGTGATGGC  198
       |||||| ||||||  || | | ||||| ||| ||| ||  |||||| ||
seq2  -GCATATAAAAGTTGACATGTC-AATGGACCT-TCTCTTAAAGTGAT-GC  73

seq1  CGACTAGGCCATTTTCTGATTCATATGCAGCTAGAGACACGAGCTCCAGG  248
       ||||| ||||| || |||| ||||||||||||||| ||  ||||||  |
seq2  TGACTA-GCCATCTT-TGATACATATGCAGCTAGAGTCAGAAGCTCC--G  119

seq1  GGATTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGATCC  298
       || |||||| ||| ||||| |||   |||| ||||||| ||||||||||
seq2  AGAGTACTGG-TAG-TCATAATGT--GTCCA-CTATAGGATTGCAGATCC  164

seq1  CTTTAGCTCCTTGGTTACTTTCTCTAGCTCCTCCTTTGGGGGCCCTGTGA  348
      |||||||||||||| ||| ||||||||||||||| |   | |||||||||
seq2  CTTTAGCTCCTTGGCTAC-TTCTCTAGCTCCTCCAT--AGAGCCCTGTGA  211

seq1  TCCATCCAATAGCTGACTGTGAGGATCCACTTCTATGTTTGCTAGGCCCC  398
      |||||||| |||||||||||||| |||||||||| |||||||||||||||
seq2  TCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCC  261

seq1  GGCATAGTCTCACAAGAGACAGCTCTATCTGGGTCCTTTCAGCAAAATCT  448
       |||| ||||||||||||||||||  ||||||||||||||   |||||||
seq2  AGCATCGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAATCT  311

seq1  TGCTAGTGTATGCAATGGTGTCAGTGTTTAGAAGCTGATTATGGGATGGA  498
      ||||||| |||||||||||||||| |||| || |||||||||||| ||||
seq2  TGCTAGTATATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGA  361

seq1  TCCCTGGATATGGCAGTC  516
      ||||||||||||||||||
seq2  TCCCTGGATATGGCAGTC  379