BAC Information

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BAC

Clone NameB6Ng01-099G02
Chromosome15 (Build37)
Map Location 18,873,860 - 18,949,851
singlet/doubletdoublet
Overlap geneCdh10
Upstream geneLOC666835, LOC666839
Downstream geneEG666857, EG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099G02.bB6Ng01-099G02.g
ACCDH909189DH909190
length1,1491,138
definitionDH909189|Mus musculus domesticus DNA, BAC clone: B6Ng01-099G02, 5' end.DH909190|Mus musculus domesticus DNA, BAC clone: B6Ng01-099G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,948,705 - 18,949,851)(18,873,860 - 18,875,010)
sequence
gaattcattattctttcagtttatttcagtatttttaaaagtaatgtctt
gatggttcagagcatattttctcattgttatctatgtggtcatctctgtg
tcccaattttgttttgaatttataaaatcaagagactctctaaagtaaat
gactagcctataaatctttgaaggtgttccttaaatgtcaatatctgagt
ggattgtggtgatgttagtaagtgaaatttgtacagagtagtatataaaa
tagaatgtataaagtattatggtctgaagaaaataactactaattaattg
tggaggttacttcaaagctaaaccctgtcctatggaaagggggcttttgc
tgaagtctgtagatcttggcttcatttcaccctcccatttcttcctgatc
ttacctcacactttccctaagcaactgtccgactattcagccttttcaag
acttttgagtaagttcccaaatcagtgacacaggctccaagccaccaaag
ctgtcagtgaaatggtaaccatttagcagttattttagtggcgttcccac
tgatgtgatcattgcacagagtgtaaacgtttctgtaatattattttata
gaaagcaatttaacttgtgtagaaaacaatttaacttgtgtgtgtcctat
aaagtcattgtaccttattttgtttcacaaaaaacaagtctctattatat
attatcctttctccctttttagcaggtttgaagactgaactgaaggcatt
tcaaatgttaggcaaggactctaccactgggctacactttcagtcatttt
ctacttttcattttacgatttttcccctttttgagacaaagttgccagag
ttacgttcaacttactctgtagactttgctctttgtgatcttccttgccc
tcagtagctgggcttacagatttgttgaattgtacagttctttaaagtaa
ttatcccaaattgtttctagtatatgaaagaattaagattcacgaagctt
ctcctgtcagtgtgagtggtttcagtgttggagagacaggagtccatgag
catgccatgttatatgcattcttattaccttccagtaataataacatatt
tttccatcgtcttgacaaatcctattgaccatccataccaataaccagt
gaattcagttaacatgacagtgtagggcttctttgttttgtgctgatgta
acacagaaacttatcacacaatcacacatacacacacaaacaaacacaaa
tctcacatttctaaaaagtgagaaacccaacggcaaggtgttggcacccg
acaaaagccattttgatgccctgtccctcggtagaggctccagaggatgt
gagatcaagagagaactgaagatagccttttattcacacactgttcccag
gatgaggagtatgcttctgtgataagtgacaagcaaattctcagcacaag
ctcattgctggagatactcaaacactagcagtactaatagataagatgaa
atcaaagctctggactacacatgtggccacttaaaacctgtcccaatgac
ttaattccagtgaaaaatcaatgatgtcttgaatgcccattgtgttcaaa
tcataatagggcacaaatctatgcgatgtttattacattatatacatgca
gccaaacacagatgcagatagcgaatatccttaaattgcaaaataaagat
atatacatgcttaaattgaagagactgtataatgtcatgcgtatgacagt
gggccagattatttctgtattgattcacaaagaggtatggaattgaattt
gattattattatcaaatacttctttaggttaccagaatgcattattgcta
aaagaaaaatctcagacttacattatcagcaatgacatagttacatattg
ataaaagagatcgtataaaacttctttaaaaccgagtacactatgcctgc
agaccacgaggaccatagggaaagacacatatgaacatccacagaagaag
tctgacagttttcaaaatgaagtagtgaatagtatttgcatgtcttttct
agggatacaaagtccagtgcttgaaacatagtagtaactttcactccttt
gcattctaaaaggatctctctggatagtagacagactaaccctaagggat
atgaatagaaactagagataagcaagactaggtgacagaactctgcaagg
tgtggaagaggggagacctctgaaagcattagattatttcattgtaaaaa
aaaaatggcctgattaggaataattgaactaaggcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_18948705_18949851
seq2: B6Ng01-099G02.b_50_1198 (reverse)

seq1  ACTGTTTATTTGTATGGATGGTCAATAGACATTTGTC-AGACGAATGGAA  49
      |||| ||||| |||||||||||||||||  ||||||| ||||| ||||||
seq2  ACTGGTTATTGGTATGGATGGTCAATAG-GATTTGTCAAGACG-ATGGAA  48

seq1  AAATTATGTTATTATTTTACTTGAAAGTTATTAAGAATGCATATAACATG  99
      ||| ||||||||||  |||| || ||| || |||||||||||||||||||
seq2  AAA-TATGTTATTA--TTAC-TGGAAGGTAATAAGAATGCATATAACATG  94

seq1  GCAATGCTTCATGGACTCCTGTCTCTTCCGACACTG-AACCACTCACACT  148
      || |||| ||||||||||||||||| ||| |||||| |||||||||||||
seq2  GC-ATGC-TCATGGACTCCTGTCTC-TCCAACACTGAAACCACTCACACT  141

seq1  GACAGGAGAAAGCTTCGTGAATCT--ATTC-TTCATATACTAGAAACAAT  195
      |||||||| |||||||||||||||  |||| |||||||||||||||||||
seq2  GACAGGAG-AAGCTTCGTGAATCTTAATTCTTTCATATACTAGAAACAAT  190

seq1  TTGGGAT-ATTACTTTAA--GACTGTACAATTCAACAAATCTGTAAGCCC  242
      ||||||| ||||||||||   |||||||||||||||||||||||||||||
seq2  TTGGGATAATTACTTTAAAGAACTGTACAATTCAACAAATCTGTAAGCCC  240

seq1  AGCTACTGAGG--CAGGAAGATCAC-AAGAGCAAAGTCTACAGAGTAAGT  289
      |||||||||||   ||||||||||| ||||||||||||||||||||||||
seq2  AGCTACTGAGGGCAAGGAAGATCACAAAGAGCAAAGTCTACAGAGTAAGT  290

seq1  TGAACGTTACTCTGGCAACTTTGTCTC-AAAAGGGGAAAAATCGTAAAAT  338
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  TGAACGTAACTCTGGCAACTTTGTCTCAAAAAGGGGAAAAATCGTAAAAT  340

seq1  GAAAAGTAGAAAATGACTGAAAGTGTAGCCCAGTGGTAGAGTCCTTGCCT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAGAAAATGACTGAAAGTGTAGCCCAGTGGTAGAGTCCTTGCCT  390

seq1  AACATTTGAAATGCCTTCAGTTCAGTCTTCAAACCTGCTAAAAAGGGAGA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGAAATGCCTTCAGTTCAGTCTTCAAACCTGCTAAAAAGGGAGA  440

seq1  AAGGATAATATATAATAGAGACTTGTTTTTTGTGAAACAAAATAAGGTAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAATATATAATAGAGACTTGTTTTTTGTGAAACAAAATAAGGTAC  490

seq1  AATGACTTTATAGGACACACACAAGTTAAATTGTTTTCTACACAAGTTAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTTATAGGACACACACAAGTTAAATTGTTTTCTACACAAGTTAA  540

seq1  ATTGCTTTCTATAAAATAATATTACAGAAACGTTTACACTCTGTGCAATG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTCTATAAAATAATATTACAGAAACGTTTACACTCTGTGCAATG  590

seq1  ATCACATCAGTGGGAACGCCACTAAAATAACTGCTAAATGGTTACCATTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATCAGTGGGAACGCCACTAAAATAACTGCTAAATGGTTACCATTT  640

seq1  CACTGACAGCTTTGGTGGCTTGGAGCCTGTGTCACTGATTTGGGAACTTA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACAGCTTTGGTGGCTTGGAGCCTGTGTCACTGATTTGGGAACTTA  690

seq1  CTCAAAAGTCTTGAAAAGGCTGAATAGTCGGACAGTTGCTTAGGGAAAGT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGTCTTGAAAAGGCTGAATAGTCGGACAGTTGCTTAGGGAAAGT  740

seq1  GTGAGGTAAGATCAGGAAGAAATGGGAGGGTGAAATGAAGCCAAGATCTA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTAAGATCAGGAAGAAATGGGAGGGTGAAATGAAGCCAAGATCTA  790

seq1  CAGACTTCAGCAAAAGCCCCCTTTCCATAGGACAGGGTTTAGCTTTGAAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCAGCAAAAGCCCCCTTTCCATAGGACAGGGTTTAGCTTTGAAG  840

seq1  TAACCTCCACAATTAATTAGTAGTTATTTTCTTCAGACCATAATACTTTA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCCACAATTAATTAGTAGTTATTTTCTTCAGACCATAATACTTTA  890

seq1  TACATTCTATTTTATATACTACTCTGTACAAATTTCACTTACTAACATCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTATTTTATATACTACTCTGTACAAATTTCACTTACTAACATCA  940

seq1  CCACAATCCACTCAGATATTGACATTTAAGGAACACCTTCAAAGATTTAT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATCCACTCAGATATTGACATTTAAGGAACACCTTCAAAGATTTAT  990

seq1  AGGCTAGTCATTTACTTTAGAGAGTCTCTTGATTTTATAAATTCAAAACA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGTCATTTACTTTAGAGAGTCTCTTGATTTTATAAATTCAAAACA  1040

seq1  AAATTGGGACACAGAGATGACCACATAGATAACAATGAGAAAATATGCTC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGGACACAGAGATGACCACATAGATAACAATGAGAAAATATGCTC  1090

seq1  TGAACCATCAAGACATTACTTTTAAAAATACTGAAATAAACTGAAAGAAT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCATCAAGACATTACTTTTAAAAATACTGAAATAAACTGAAAGAAT  1140

seq1  AATGAATTC  1147
      |||||||||
seq2  AATGAATTC  1149

seq1: chr15_18873860_18875010
seq2: B6Ng01-099G02.g_70_1207

seq1  GAATTCAGTTAACATGACAGTGTAGGGCTTCTTTGTTTTGTGCTGATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAACATGACAGTGTAGGGCTTCTTTGTTTTGTGCTGATGTA  50

seq1  ACACAGAAACTTATCACACAATCACACATACACACACAAACAAACACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAACTTATCACACAATCACACATACACACACAAACAAACACAAA  100

seq1  TCTCACATTTCTAAAAAGTGAGAAACCCAACGGCAAGGTGTTGGCACCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATTTCTAAAAAGTGAGAAACCCAACGGCAAGGTGTTGGCACCCG  150

seq1  ACAAAAGCCATTTTGATGCCCTGTCCCTCGGTAGAGGCTCCAGAGGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCCATTTTGATGCCCTGTCCCTCGGTAGAGGCTCCAGAGGATGT  200

seq1  GAGATCAAGAGAGAACTGAAGATAGCCTTTTATTCACACACTGTTCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAAGAGAGAACTGAAGATAGCCTTTTATTCACACACTGTTCCCAG  250

seq1  GATGAGGAGTATGCTTCTGTGATAAGTGACAAGCAAATTCTCAGCACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGAGTATGCTTCTGTGATAAGTGACAAGCAAATTCTCAGCACAAG  300

seq1  CTCATTGCTGGAGATACTCAAACACTAGCAGTACTAATAGATAAGATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGCTGGAGATACTCAAACACTAGCAGTACTAATAGATAAGATGAA  350

seq1  ATCAAAGCTCTGGACTACACATGTGGCCACTTAAAACCTGTCCCAATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCTCTGGACTACACATGTGGCCACTTAAAACCTGTCCCAATGAC  400

seq1  TTAATTCCAGTGAAAAATCAATGATGTCTTGAATGCCCATTGTGTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCAGTGAAAAATCAATGATGTCTTGAATGCCCATTGTGTTCAAA  450

seq1  TCATAATAGGGCACAAATCTATGCGATGTTTATTACATTATATACATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATAGGGCACAAATCTATGCGATGTTTATTACATTATATACATGCA  500

seq1  GCCAAACACAGATGCAGATAGCGAATATCCTTAAATTGCAAAATAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACACAGATGCAGATAGCGAATATCCTTAAATTGCAAAATAAAGAT  550

seq1  ATATACATGCTTAAATTGAAGAGACTGTATAATGTCATGCGTATGACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATGCTTAAATTGAAGAGACTGTATAATGTCATGCGTATGACAGT  600

seq1  GGGCCAGATTATTTCTGTATTGATTCACAAAGAGGTATGGAATTGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGATTATTTCTGTATTGATTCACAAAGAGGTATGGAATTGAATTT  650

seq1  GATTATTATTATCAAATACTTCTTTAGGTTACCAGAATGCATTATTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTATTATCAAATACTTCTTTAGGTTACCAGAATGCATTATTGCTA  700

seq1  AAAGAAAAATCTCAGACTTACATTATCAGCAATGACATAGTTACATATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAATCTCAGACTTACATTATCAGCAATGACATAGTTACATATTG  750

seq1  ATAAAAGAGATCGTATAAAACTTCTTTAAAACCGAGTACACTATGCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAGATCGTATAAAACTTCTTTAAAACCGAGTACACTATGCCTGC  800

seq1  AGACCACGAGGACCATAGGGAAAGACACATATGAACATCCACAGAAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACGAGGACCATAGGGAAAGACACATATGAACATCCACAGAAGAAG  850

seq1  TCTGACAGTTTTCAAAAATGAAGTAGTGAATAGTATTTGCATGTCTTTTC  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGTTTTC-AAAATGAAGTAGTGAATAGTATTTGCATGTCTTTTC  899

seq1  TAGGGATACAAAGTCCAGTGCTTGAAACATAGTAGTAACTTTCACTCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATACAAAGTCCAGTGCTTGAAACATAGTAGTAACTTTCACTCCTT  949

seq1  TGCATTCTAAAAGGATCTCTCTGGATAGTAGACAGACTAACCCTAAAGGG  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCATTCTAAAAGGATCTCTCTGGATAGTAGACAGACTAACCCT-AAGGG  998

seq1  ATATGAATAGAAACTAAGAGATAAGCAAGGAACATAGGTGACAG-ACTCT  1049
      ||||||||||||||| |||||||||||||  || |||||||||| |||||
seq2  ATATGAATAGAAACT-AGAGATAAGCAAG--AC-TAGGTGACAGAACTCT  1044

seq1  GGCAAGGTGTTGGAAGAGGTGGAGA-CTCTGAAAAGCCATTAGGAATTTA  1098
       |||||||| ||||||||| ||||| ||||||||   ||||||    |||
seq2  -GCAAGGTG-TGGAAGAGG-GGAGACCTCTGAAA--GCATTAG---ATTA  1086

seq1  TTTCAATGTAAAAAAAAAAATGGCTTGATTACAGAATAAATG-ACTAAGG  1147
      ||||| ||| |||||||||||||| ||||||  |||||| || |||||||
seq2  TTTCATTGT-AAAAAAAAAATGGCCTGATTA-GGAATAATTGAACTAAGG  1134

seq1  CAAA  1151
      ||||
seq2  CAAA  1138