BAC Information

Click to search

BAC

Clone NameB6Ng01-099J10
Chromosome15 (Build37)
Map Location 34,349,970 - 34,351,146
singlet/doubletsinglet
Overlap geneMatn2
Upstream genePgcp, Tspyl5, LOC675463, Mtdh, Laptm4b
Downstream geneRpl30, BC030476, Hrsp12, Pop1, Npal2, Kcns2, Stk3, Osr2, Vps13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099J10.bB6Ng01-099J10.g
ACCDH909342DH909343
length1,1651,133
definitionDH909342|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J10, 5' end.DH909343|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattatcaaaaaatttttaatctggttcctccatttattagcaag
tggtcttggcgagctgtaataagccttcctcgactttaatttctcttgct
agtaaatgagaataatattggatcccttaactagcctacaggatatattt
ctgaggacttcccttgtctaaaaaatgttgcaatgatgcttaacaaaaac
aaagttgatgggttcttcctgttgtaacccctgccaagccccttttccac
tttggtgcacacccactgttgaaatcctgttcactgtctaaaaggcttag
ttagctttcagttaactgtatggttctcataaactcttactgttccccga
tggagctgaagagataactcaacagttaagaacactggctgctctttcag
gggtcctgagttcaattcccagaaaccacatggtgactcacaaccatctg
taatgaggtctgatgccctcttctgacatgcaggttacatgcagcagaga
gcactcgaaaataaaacaaacaaacaaataaaatgcagcagagcactcat
gcactaaattaattaattaattaattaattaattaattatttaaaatgtc
actgccacccagccctataaaataatatgctacattcaggagctcagtgt
ggtgatctcagagttatctctgactcttgtcctaaccatgtgacggtgga
ctcttcatttcaagtgttggaaaggacagaagttgacacaaaattgtcct
tcagatgaactttactaggagagatcttcatgatcatgagcagctgcgat
caggccgtgacatgggagaccagtagcaggcacagccacaccagagtaaa
gaagctagtgagaaagagtcctggattctaaagaacgaaggccatcctga
tccggcgttgtcagtggaggtggccagatccataccatgtgatctgcctg
gcactgactgtggtctagcttgctcacagctgcagagggaagagagaact
cccaggagacaggcttcagagtgcgctgatttctggaaaggggagaagac
agctagaaagatctgtgctctaacatcaatctacggcaaatctttaggcc
ctacacttcgaacatagcatctgaccacatgatccactgtgttctggccg
ccaggatacactgca
gaattcttatcaggcatcagtcatgtaagtggtacacagacatacatgca
tgcaaaatacctagacacagaaaattagaattaacaaaattagaaagcac
catgaggcaagtgagagagagtggaagtgtgtgggtagttctgtcttcac
tgtacttcagatatggggcaggggagtcaatagttcaaggccacactcag
cttcagcttgagccagcctgaactatgtaagaccctagtcaaaaaaaaaa
aattgtttaagaaaaggagaaaagaaaaggagagaaaaaaaggggaagaa
gagaagggaaggggaaataggagggcttccaataagtagatatctttgcc
tatacccggtaatataatttctttatacacatgcaaacagagagagagac
agagacagaaaaagagacagagagaattttctgaaagtattttttctcat
ataataatcctaattatggtttcccctccatctcctcctcccagttcttc
ccctcccctcctcccttctagatccaccctctttctgtctctcattagaa
aacaaacagacttctaaagattaataatgaaatagcacagaagttagcac
attgtgattaggaaaaataaacagagggaaaagagctcgagagtaagcac
aagaaagtgagacccactcattggcacactcaggagccccacaaaatact
aaaccagaagccataatatacatggacagggcctggtgcagccatcatag
gccctatgcacgtttcctcagtctctgtgagttcatatatgtgttgaccc
tgttgatttacaggggccttgctttcttggtgtcctccatctccccaacc
ccatgtcttacactctctggctccctctttcacagtgttctctgaagccc
cgaggagaagggatttgataagacatctccgtttagggctgagtatccaa
agtcttctccgtctctggcatattatcagttgagggtctctgtatttgtc
ccatcggtacggaaggagcttctctgatgacgactggtaatcactgacct
atggaaaagggaagaatgccttaggagtcatttcttggctaactctattt
tagaacagagcatttgaattttccctaggctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_34349970_34351146
seq2: B6Ng01-099J10.b_44_1208

seq1  GAATTCATTATCAAAAAATTTTTAATCTGGTTCCTCCATTTATTAGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCAAAAAATTTTTAATCTGGTTCCTCCATTTATTAGCAAG  50

seq1  TGGTCTTGGCGAGCTGTAATAAGCCTTCCTCGACTTTAATTTCTCTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTGGCGAGCTGTAATAAGCCTTCCTCGACTTTAATTTCTCTTGCT  100

seq1  AGTAAATGAGAATAATATTGGATCCCTTAACTAGCCTACAGGATATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGAGAATAATATTGGATCCCTTAACTAGCCTACAGGATATATTT  150

seq1  CTGAGGACTTCCCTTGTCTAAAAAATGTTGCAATGATGCTTAACAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGACTTCCCTTGTCTAAAAAATGTTGCAATGATGCTTAACAAAAAC  200

seq1  AAAGTTGATGGGTTCTTCCTGTTGTAACCCCTGCCAAGCCCCTTTTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGATGGGTTCTTCCTGTTGTAACCCCTGCCAAGCCCCTTTTCCAC  250

seq1  TTTGGTGCACACCCACTGTTGAAATCCTGTTCACTGTCTAAAAGGCTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGCACACCCACTGTTGAAATCCTGTTCACTGTCTAAAAGGCTTAG  300

seq1  TTAGCTTTCAGTTAACTGTATGGTTCTCATAAACTCTTACTGTTCCCCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTCAGTTAACTGTATGGTTCTCATAAACTCTTACTGTTCCCCGA  350

seq1  TGGAGCTGAAGAGATAACTCAACAGTTAAGAACACTGGCTGCTCTTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGAAGAGATAACTCAACAGTTAAGAACACTGGCTGCTCTTTCAG  400

seq1  GGGTCCTGAGTTCAATTCCCAGAAACCACATGGTGACTCACAACCATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTGAGTTCAATTCCCAGAAACCACATGGTGACTCACAACCATCTG  450

seq1  TAATGAGGTCTGATGCCCTCTTCTGACATGCAGGTTACATGCAGCAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGTCTGATGCCCTCTTCTGACATGCAGGTTACATGCAGCAGAGA  500

seq1  GCACTCGAAAATAAAACAAACAAACAAATAAAATGCAGCAGAGCACTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCGAAAATAAAACAAACAAACAAATAAAATGCAGCAGAGCACTCAT  550

seq1  GCACTAAATTAATTAATTAATTAATTAATTAATTAATTATTTAAAATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAAATTAATTAATTAATTAATTAATTAATTAATTATTTAAAATGTC  600

seq1  ACTGCCACCCAGCCCTATAAAATAATATGCTACATTCAGGAGCTCAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCACCCAGCCCTATAAAATAATATGCTACATTCAGGAGCTCAGTGT  650

seq1  GGTGATCTCAGAGTTATCTCTGACTCTTGTCCTAACCATGTGACGGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATCTCAGAGTTATCTCTGACTCTTGTCCTAACCATGTGACGGTGGA  700

seq1  CTCTTCATTTCAAGTGTTGGAAAGGACAGAAGTTGACACAAAATTGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATTTCAAGTGTTGGAAAGGACAGAAGTTGACACAAAATTGTCCT  750

seq1  TCAGATGAACTTTACTAGGAGAGATCTTCATGATCATGAGCAGCTGCGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGAACTTTACTAGGAGAGATCTTCATGATCATGAGCAGCTGCGAT  800

seq1  CAGGCCGTGACATGGGAGACCAGTAGCAGGCACAGCCACACCAGAGTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCGTGACATGGGAGACCAGTAGCAGGCACAGCCACACCAGAGTAAA  850

seq1  GAAGCTAGTGAGAAAGAGTCCTGGATTCTAAAGAACGAAGGCCATCCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGTGAGAAAGAGTCCTGGATTCTAAAGAACGAAGGCCATCCTGA  900

seq1  TCCGGCGTTGTCAGTGGAGGTGGCCAGATCCATACCATGTGATCTGCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCGTTGTCAGTGGAGGTGGCCAGATCCATACCATGTGATCTGCCTG  950

seq1  GCACTGACTGTGGTCTAGGCTTGCTCACAGCTGCAAGAGGGAAGAGAGAA  1000
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  GCACTGACTGTGGTCTA-GCTTGCTCACAGCTGC-AGAGGGAAGAGAGAA  998

seq1  CTCCCAGGAAGACAGGCTTCAGGGAGGTGCGGCCTGATTTCTGGAAGGGG  1050
      |||||||| |||||||||||||    |||||  ||||||||||||| |||
seq2  CTCCCAGG-AGACAGGCTTCAG---AGTGCG--CTGATTTCTGGAAAGGG  1042

seq1  GAGAAAGACAGCTAG-AAGATCTGTGCTCTAACATCAATCTACCGGCAAA  1099
      ||| ||||||||||| |||||||||||||||||||||||||| |||||||
seq2  GAG-AAGACAGCTAGAAAGATCTGTGCTCTAACATCAATCTA-CGGCAAA  1090

seq1  TCTTATAGGCTCTACCATCGGAACATAGGCAGTCTGACCACATGATCCAC  1149
      |||| ||||| ||||  |  ||||||| ||| ||||||||||||||||||
seq2  TCTT-TAGGCCCTACACTTCGAACATA-GCA-TCTGACCACATGATCCAC  1137

seq1  TGTGTTCTGGGCCAGCAGGAT-CACTGCA  1177
      |||||||| ||||  |||||| |||||||
seq2  TGTGTTCT-GGCCGCCAGGATACACTGCA  1165